Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61081790 . G A CCDS31576.1:NM_001923.4:c.1579Cgg>Tgg_NP_001914.3:p.527R>W Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 ARG A:527 A:527 102.0 0.453 E -98.3 114.6 102.0 0.453 0.0 HOH
 8.829
 N
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 ARG B:527 Y:527 51.0 NA -102.0 133.7 51.0 NA NA
ARG D:527 B:527 133.0 0.591 -103.5 132.8 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 ARG A:527 A:527 84.0 NA E -77.8 107.3 84.0 NA NA
ARG B:527 B:527 83.0 NA E -77.9 106.9 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 ARG A:527 A:527 115.0 0.511 E -99.4 132.6 115.0 0.511 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 ARG A:527 A:527 102.0 0.453 E -99.8 138.8 102.0 0.453 0.0
ARG B:527 B:527 102.0 0.453 E -99.0 137.1 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 ARG A:527 A:527 104.0 0.462 E -98.5 115.0 104.0 0.462 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 ARG B:527 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 ARG A:527 A:527 107.0 0.476 E -83.6 121.5 107.0 0.476 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 ARG B:527 Y:527 97.0 0.431 E -91.9 103.7 97.0 0.431 0.0
ARG E:527 B:527 41.0 NA E -91.7 104.4 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 ARG A:527 NA:NA DO NA DO DO DO NA NA NA
ARG D:527 NA:NA DO NA DO DO DO NA NA NA
ARG G:527 NA:NA DO NA DO DO DO NA NA NA
ARG J:527 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:527 d:527 24.0 NA E -103.2 128.2 24.0 NA NA
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 ARG A:529 A:527 92.0 0.409 E -92.2 109.7 92.0 0.409 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 ARG A:529 A:527 101.0 0.449 E -89.0 109.8 101.0 0.449 0.0 HOH
 7.283
 NH1
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 ARG T:530 d:527 23.0 NA E -102.5 128.6 23.0 NA NA
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 ARG N:530 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 ARG Z:530 d:527 46.0 NA E -106.3 126.9 46.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:530 d:527 44.0 NA E -106.2 127.0 44.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG A:531 A:527 113.0 0.502 E -76.7 129.2 113.0 0.502 0.0
ARG C:531 C:527 113.0 0.502 E -76.9 129.1 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:531 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:550 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:550 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:550 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG L:550 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG C:546 C:527 111.0 0.493 E -76.9 129.1 111.0 0.493 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 ARG A:546 A:527 18.0 NA E -99.7 115.9 18.0 NA NA
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 ARG A:546 A:527 48.0 NA E -117.9 115.1 48.0 NA NA
ARG E:546 E:527 49.0 NA E -117.9 115.1 NA NA NA
ARG I:546 I:527 50.0 NA E -117.9 115.1 NA NA NA
ARG M:546 M:527 49.0 NA E -117.8 115.1 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:545 A:527 95.0 0.422 E -89.3 127.0 95.0 0.422 0.0 HOH
 2.637
 NH1
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:545 A:527 98.0 0.436 E -93.9 120.8 98.0 0.436 0.0 HOH
 2.669
 NH1
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:545 A:527 103.0 0.458 E -89.5 108.3 103.0 0.458 0.0 HOH
 4.993
 N
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:545 A:527 101.0 0.449 E -88.3 126.2 101.0 0.449 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:545 A:527 108.0 0.48 E -94.5 117.6 108.0 0.48 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:545 A:527 98.0 0.436 E -89.5 125.0 98.0 0.436 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 ARG A:545 A:527 124.0 0.551 E -97.0 146.5 124.0 0.551 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 ARG A:526 A:527 119.0 0.529 -104.5 145.0 119.0 0.529 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 76.0 0.338 -151.4 93.4 76.0 0.338 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 89.0 0.396 -104.1 111.4 89.0 0.396 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 101.0 0.449 -141.5 87.5 101.0 0.449 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 115.0 0.511 E -101.5 138.5 115.0 0.511 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 120.0 0.533 E -101.1 130.3 120.0 0.533 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 125.0 0.556 E -89.5 141.1 125.0 0.556 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 123.0 0.547 E -84.8 145.9 123.0 0.547 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 122.0 0.542 E -90.5 129.1 122.0 0.542 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:530 A:527 134.0 0.596 E -115.9 122.6 134.0 0.596 0.0
ARG B:530 B:527 108.0 0.48 -109.3 119.9 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:527 A:527 114.0 0.507 E -104.0 124.4 114.0 0.507 0.0
ARG B:527 B:527 117.0 0.52 E -84.9 123.3 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:527 A:527 103.0 0.458 E -143.5 81.0 103.0 0.458 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 ARG A:527 A:527 114.0 0.507 E -76.9 129.3 114.0 0.507 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:546 A:527 107.0 0.476 E -99.1 127.2 107.0 0.476 0.0
ARG C:546 C:527 106.0 0.471 E -99.6 128.0 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:546 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:546 A:527 97.0 0.431 E -85.0 128.6 97.0 0.431 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:546 A:527 100.0 0.444 E -82.2 123.6 100.0 0.444 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 ARG A:537 A:527 114.0 0.507 E -93.7 120.3 114.0 0.507 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 ARG A:537 A:527 124.0 0.551 56.0 68.9 124.0 0.551 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 ARG A:545 A:527 107.0 0.476 E -75.0 106.6 107.0 0.476 0.0
ARG C:545 C:527 106.0 0.471 E -74.6 106.6 NA NA NA
ARG E:545 E:527 107.0 0.476 E -74.3 106.2 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
 2006-02-28 ARG A:141 A:527 104.0 0.462 E -81.5 120.1 104.0 0.462 0.0
ARG B:141 B:527 110.0 0.489 E -89.4 115.2 NA NA NA
ARG C:141 C:527 96.0 0.427 E -94.2 122.0 NA NA NA
ARG D:141 D:527 106.0 0.471 E -76.4 116.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ARG A:527 A:527 112.0 0.498 E -105.2 122.2