Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61081819 . T A CCDS31576.1:NM_001923.4:c.1550tAc>tTc_NP_001914.3:p.517Y>F Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 TYR A:517 A:517 20.0 0.087 E -128.3 133.5 20.0 0.087 0.0 HOH
 3.827
 CE2
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 TYR B:517 Y:517 30.0 0.13 E -124.3 147.4 30.0 0.13 0.0
TYR D:517 B:517 29.0 0.126 E -122.8 147.8 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 TYR A:517 A:517 13.0 0.057 E -100.4 139.9 13.0 0.057 0.0
TYR B:517 B:517 14.0 0.061 E -144.7 138.9 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 TYR A:517 A:517 27.0 0.117 E -105.5 167.2 27.0 0.117 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 TYR A:517 A:517 26.0 0.113 E -106.8 144.7 26.0 0.113 0.0
TYR B:517 B:517 23.0 0.1 E -100.7 137.7 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 TYR A:517 A:517 30.0 0.13 E -132.3 131.4 30.0 0.13 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 TYR B:517 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 TYR A:517 A:517 25.0 0.109 E -129.6 148.8 25.0 0.109 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 TYR B:517 Y:517 22.0 0.096 E -120.0 153.2 22.0 0.096 0.0
TYR E:517 B:517 19.0 0.083 E -119.0 154.7 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 TYR A:517 NA:NA DO NA DO DO DO NA NA NA
TYR D:517 NA:NA DO NA DO DO DO NA NA NA
TYR G:517 NA:NA DO NA DO DO DO NA NA NA
TYR J:517 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 TYR Z:517 d:517 17.0 0.074 E -117.3 133.8 17.0 0.074 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 TYR A:519 A:517 15.0 0.065 E -124.3 135.0 15.0 0.065 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 TYR A:519 A:517 12.0 0.052 E -127.7 129.2 12.0 0.052 0.0 HOH
 6.687
 CE2
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 TYR T:520 d:517 21.0 0.091 E -117.7 134.0 21.0 0.091 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 TYR N:520 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 TYR Z:520 d:517 41.0 NA E -124.5 132.4 41.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 TYR Z:520 d:517 39.0 NA E -124.4 132.3 39.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 TYR A:521 A:517 22.0 0.096 E -90.7 156.9 22.0 0.096 0.0
TYR C:521 C:517 22.0 0.096 E -90.3 157.1 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 TYR K:521 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 TYR K:540 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 TYR K:540 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 TYR K:540 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 TYR L:540 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 TYR C:536 C:517 22.0 0.096 E -90.5 156.9 22.0 0.096 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 TYR A:536 A:517 12.0 0.052 E -121.4 130.7 12.0 0.052 0.0
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 TYR A:536 A:517 48.0 NA E -124.0 146.7 48.0 NA NA
TYR E:536 E:517 47.0 NA E -124.0 146.7 NA NA NA
TYR I:536 I:517 47.0 NA E -124.0 146.7 NA NA NA
TYR M:536 M:517 48.0 NA E -124.0 146.6 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 TYR A:535 A:517 13.0 0.057 E -136.7 130.4 13.0 0.057 0.0
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 TYR A:535 A:517 13.0 0.057 E -126.6 133.1 13.0 0.057 0.0 HOH
 7.559
 CE1
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 TYR A:535 A:517 10.0 0.043 E -129.0 129.3 10.0 0.043 0.0 HOH
 5.943
 CD2
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 TYR A:535 A:517 19.0 0.083 E -137.2 125.7 19.0 0.083 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 TYR A:535 A:517 21.0 0.091 E -134.5 131.0 21.0 0.091 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 TYR A:535 A:517 19.0 0.083 E -136.6 128.2 19.0 0.083 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 TYR A:535 A:517 26.0 0.113 E -119.2 100.2 26.0 0.113 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 TYR A:516 A:517 35.0 0.152 E -123.0 144.2 35.0 0.152 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 14.0 0.061 E -123.1 129.6 14.0 0.061 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 15.0 0.065 E -132.0 120.6 15.0 0.065 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 31.0 0.135 -99.1 -135.1 31.0 0.135 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 17.0 0.074 -75.3 -152.5 17.0 0.074 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 16.0 0.07 -122.8 -137.9 16.0 0.07 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 23.0 0.1 -69.5 -150.2 23.0 0.1 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 18.0 0.078 -90.6 -148.8 18.0 0.078 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 23.0 0.1 -93.6 -149.9 23.0 0.1 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 TYR A:520 A:517 24.0 0.104 E -145.4 145.5 24.0 0.104 0.0
TYR B:520 B:517 10.0 0.043 -140.9 -172.7 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 TYR A:517 A:517 24.0 0.104 E -128.0 123.3 24.0 0.104 0.0
TYR B:517 B:517 20.0 0.087 E -135.3 122.3 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 TYR A:517 A:517 21.0 0.091 E -119.9 142.5 21.0 0.091 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 TYR A:517 A:517 21.0 0.091 E -90.4 156.9 21.0 0.091 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 TYR A:536 A:517 15.0 0.065 E -130.1 113.8 15.0 0.065 0.0
TYR C:536 C:517 16.0 0.07 E -129.8 114.1 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 TYR A:536 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 TYR A:536 A:517 8.0 0.035 E -130.6 130.3 8.0 0.035 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 TYR A:536 A:517 21.0 0.091 E -133.8 118.6 21.0 0.091 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 TYR A:527 A:517 18.0 0.078 E -127.1 132.9 18.0 0.078 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 TYR A:527 A:517 76.0 0.33 57.7 -36.2 76.0 0.33 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 TYR A:535 A:517 24.0 0.104 E -119.0 134.3 24.0 0.104 0.0
TYR C:535 C:517 24.0 0.104 E -118.1 133.5 NA NA NA
TYR E:535 E:517 23.0 0.1 E -119.3 132.8 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
 2006-02-28 TYR A:131 A:517 24.0 0.104 E -121.6 130.4 24.0 0.104 0.0
TYR B:131 B:517 10.0 0.043 E -127.7 125.2 NA NA NA
TYR C:131 C:517 15.0 0.065 E -132.6 133.1 NA NA NA
TYR D:131 D:517 27.0 0.117 E -111.6 140.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 TYR A:517 A:517 20.0 0.087 E -124.1 129.9