Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61081850 . G A CCDS31576.1:NM_001923.4:c.1519Cag>Tag_NP_001914.3:p.507Q>* Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 GLN A:507 A:507 5.0 0.028 E -131.9 147.8 5.0 0.028 0.0 HOH
6.915
O
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 GLN B:507 Y:507 3.0 0.017 E -128.6 160.1 3.0 0.017 0.0
GLN D:507 B:507 1.0 0.006 E -127.2 159.1 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 GLN A:507 A:507 5.0 0.028 E -129.6 144.4 5.0 0.028 0.0
GLN B:507 B:507 5.0 0.028 E -130.0 144.6 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 GLN A:507 A:507 4.0 0.022 E -162.8 102.3 4.0 0.022 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 GLN A:507 A:507 4.0 0.022 E -114.1 159.3 4.0 0.022 0.0
GLN B:507 B:507 0.0 0.0 E -156.0 162.7 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 GLN A:507 A:507 0.0 0.0 E -124.3 156.3 0.0 0.0 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 GLN B:507 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 GLN A:507 A:507 9.0 0.05 E -106.7 155.5 9.0 0.05 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 GLN B:507 Y:507 1.0 0.006 E -108.3 151.9 1.0 0.006 0.0
GLN E:507 B:507 2.0 0.011 E -108.1 152.1 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 GLN A:507 NA:NA DO NA DO DO DO NA NA NA
GLN D:507 NA:NA DO NA DO DO DO NA NA NA
GLN G:507 NA:NA DO NA DO DO DO NA NA NA
GLN J:507 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 GLN Z:507 d:507 0.0 0.0 E -128.4 178.7 0.0 0.0 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 GLN A:509 A:507 10.0 0.056 E -126.3 146.5 10.0 0.056 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 GLN A:509 A:507 0.0 0.0 E -139.3 146.5 0.0 0.0 0.0 HOH
6.952
N
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 GLN T:510 d:507 0.0 0.0 E -128.5 179.4 0.0 0.0 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 GLN N:510 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 GLN Z:510 d:507 42.0 NA E -121.8 -179.1 42.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 GLN Z:510 d:507 41.0 NA E -121.8 -179.3 41.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 GLN A:511 A:507 1.0 0.006 E -107.3 167.9 1.0 0.006 0.0
GLN C:511 C:507 1.0 0.006 E -107.5 168.1 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 GLN K:511 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 GLN K:530 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 GLN K:530 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 GLN K:530 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 GLN L:530 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 GLN C:526 C:507 1.0 0.006 E -107.2 168.0 1.0 0.006 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 GLN A:526 A:507 6.0 0.033 -78.0 156.0 6.0 0.033 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 GLN A:526 A:507 36.0 NA E -177.7 171.6 36.0 NA NA
GLN E:526 E:507 36.0 NA E -177.8 171.5 NA NA NA
GLN I:526 I:507 36.0 NA E -177.8 171.5 NA NA NA
GLN M:526 M:507 35.0 NA E -177.7 171.5 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 GLN A:525 A:507 1.0 0.006 E -129.5 153.7 1.0 0.006 0.0 HOH
4.566
OE1
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 GLN A:525 A:507 1.0 0.006 E -130.7 145.6 1.0 0.006 0.0 HOH
4.430
OE1
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 GLN A:525 A:507 0.0 0.0 E -119.9 149.3 0.0 0.0 0.0 HOH
5.149
N
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 GLN A:525 A:507 2.0 0.011 E -121.2 153.0 2.0 0.011 0.0 HOH
7.566
OE1
O
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 GLN A:525 A:507 2.0 0.011 E -128.8 149.3 2.0 0.011 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 GLN A:525 A:507 2.0 0.011 E -124.7 154.6 2.0 0.011 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 GLN A:525 A:507 5.0 0.028 E -120.9 144.7 5.0 0.028 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 GLN A:506 A:507 3.0 0.017 E -129.4 156.4 3.0 0.017 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 5.0 0.028 B -138.3 159.6 5.0 0.028 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 3.0 0.017 E -141.9 148.8 3.0 0.017 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 3.0 0.017 -121.9 158.3 3.0 0.017 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 1.0 0.006 E -98.2 165.2 1.0 0.006 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 3.0 0.017 E -89.0 144.5 3.0 0.017 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 0.0 0.0 E -75.6 152.1 0.0 0.0 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 5.0 0.028 E -98.0 169.7 5.0 0.028 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 1.0 0.006 -104.9 155.6 1.0 0.006 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 GLN A:510 A:507 0.0 0.0 -160.3 131.0 0.0 0.0 0.0
GLN B:510 B:507 2.0 0.011 E -105.0 147.2 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 GLN A:507 A:507 0.0 0.0 E -136.4 155.4 0.0 0.0 0.0
GLN B:507 B:507 0.0 0.0 E -98.3 170.6 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 GLN A:507 A:507 2.0 0.011 -169.5 161.9 2.0 0.011 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 GLN A:507 A:507 1.0 0.006 E -107.1 168.0 1.0 0.006 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLN A:526 A:507 0.0 0.0 E -143.4 155.3 0.0 0.0 0.0
GLN C:526 C:507 0.0 0.0 E -143.4 155.4 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLN A:526 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLN A:526 A:507 0.0 0.0 E -146.9 161.0 0.0 0.0 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 GLN A:526 A:507 0.0 0.0 E -143.1 157.0 0.0 0.0 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 GLN A:517 A:507 0.0 0.0 E -131.4 145.1 0.0 0.0 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 GLN A:517 A:507 11.0 0.061 -162.8 157.6 11.0 0.061 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 GLN A:525 A:507 4.0 0.022 E -127.6 148.1 4.0 0.022 0.0
GLN C:525 C:507 4.0 0.022 E -126.6 148.2 NA NA NA
GLN E:525 E:507 4.0 0.022 E -128.6 147.5 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
2006-02-28 GLN A:121 A:507 3.0 0.017 E -127.1 150.2 3.0 0.017 0.0 HOH
7.498
O
O
GLN B:121 B:507 1.0 0.006 E -119.8 158.6 NA NA NA
GLN C:121 C:507 2.0 0.011 E -121.4 148.8 NA NA NA
GLN D:121 D:507 1.0 0.006 E -128.2 153.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 GLN A:507 A:507 4.0 0.022 E -129.4 145.6