Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61081945 . G A CCDS31576.1:NM_001923.4:c.1424tCg>tTg_NP_001914.3:p.475S>L Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 SER A:475 A:475 3.0 0.026 -164.4 173.3 3.0 0.026 0.0 HOH
7.515
CB
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 SER B:475 Y:475 4.0 0.035 -137.4 167.4 4.0 0.035 0.0
SER D:475 B:475 3.0 0.026 -136.1 165.8 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 SER A:475 A:475 17.0 0.148 -116.7 170.0 17.0 0.148 0.0
SER B:475 B:475 15.0 0.13 -116.7 169.6 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 SER A:475 A:475 6.0 0.052 -166.7 175.4 6.0 0.052 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 SER A:475 A:475 0.0 0.0 -157.8 166.8 0.0 0.0 0.0
SER B:475 B:475 1.0 0.009 176.6 158.7 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 SER A:475 A:475 3.0 0.026 -158.3 167.1 3.0 0.026 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 SER B:475 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 SER A:475 A:475 5.0 0.043 -159.4 160.9 5.0 0.043 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 SER B:475 Y:475 6.0 0.052 E -129.4 173.7 6.0 0.052 0.0
SER E:475 B:475 6.0 0.052 -129.9 174.1 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 SER A:475 NA:NA DO NA DO DO DO NA NA NA
SER D:475 NA:NA DO NA DO DO DO NA NA NA
SER G:475 NA:NA DO NA DO DO DO NA NA NA
SER J:475 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 SER Z:475 d:475 16.0 0.139 E -136.6 -173.7 16.0 0.139 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 SER A:477 A:475 4.0 0.035 -155.9 178.9 4.0 0.035 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 SER A:477 A:475 5.0 0.043 E -177.1 142.1 5.0 0.043 0.0 HOH
6.168
N
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 SER T:478 d:475 19.0 0.165 E -136.6 -174.4 19.0 0.165 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 SER N:478 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 SER Z:478 d:475 39.0 NA E -159.1 169.8 39.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 SER Z:478 d:475 41.0 NA E -159.1 169.8 41.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 SER A:479 A:475 3.0 0.026 -171.7 163.8 3.0 0.026 0.0
SER C:479 C:475 3.0 0.026 -171.6 163.6 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 SER K:479 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 SER K:498 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 SER K:498 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 SER K:498 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 SER L:498 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 SER C:494 C:475 4.0 0.035 -171.7 163.7 4.0 0.035 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 SER A:494 A:475 4.0 0.035 E -143.6 167.4 4.0 0.035 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 SER A:494 A:475 42.0 NA -161.4 167.9 42.0 NA NA
SER E:494 E:475 43.0 NA -161.4 167.9 NA NA NA
SER I:494 I:475 42.0 NA -161.4 167.9 NA NA NA
SER M:494 M:475 43.0 NA -161.4 167.8 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 SER A:493 A:475 3.0 0.026 -163.6 176.9 3.0 0.026 0.0
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 SER A:493 A:475 2.0 0.017 -163.0 177.6 2.0 0.017 0.0 HOH
4.744
CA
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 SER A:493 A:475 2.0 0.017 -163.9 177.5 2.0 0.017 0.0 HOH
3.093
OG
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 SER A:493 A:475 3.0 0.026 -145.2 -177.7 3.0 0.026 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 SER A:493 A:475 3.0 0.026 -138.3 -169.8 3.0 0.026 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 SER A:493 A:475 3.0 0.026 -143.4 -175.4 3.0 0.026 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 SER A:493 A:475 1.0 0.009 -159.5 164.8 1.0 0.009 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 SER A:474 A:475 4.0 0.035 -143.0 178.0 4.0 0.035 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 4.0 0.035 -170.6 130.4 4.0 0.035 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 5.0 0.043 -163.3 149.2 5.0 0.043 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 2.0 0.017 S 163.9 142.4 2.0 0.017 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 3.0 0.026 -149.6 157.1 3.0 0.026 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 3.0 0.026 -91.1 140.7 3.0 0.026 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 4.0 0.035 -111.4 144.4 4.0 0.035 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 6.0 0.052 E -112.9 154.5 6.0 0.052 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 3.0 0.026 -127.4 127.6 3.0 0.026 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:478 A:475 9.0 0.078 -82.6 160.9 9.0 0.078 0.0
SER B:478 B:475 10.0 0.087 -76.8 134.1 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 SER A:475 A:475 5.0 0.043 -176.0 174.6 5.0 0.043 0.0
SER B:475 B:475 0.0 0.0 167.4 -177.4 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 SER A:475 A:475 4.0 0.035 175.4 113.9 4.0 0.035 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 SER A:475 A:475 4.0 0.035 -171.7 163.6 4.0 0.035 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:494 A:475 4.0 0.035 -158.4 154.5 4.0 0.035 0.0
SER C:494 C:475 4.0 0.035 -158.5 154.3 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:494 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:494 A:475 4.0 0.035 E -163.1 175.1 4.0 0.035 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:494 A:475 2.0 0.017 E -158.1 175.7 2.0 0.017 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 SER A:485 A:475 0.0 0.0 -163.3 177.8 0.0 0.0 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 SER A:485 A:475 4.0 0.035 -160.0 -166.6 4.0 0.035 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 SER A:493 A:475 4.0 0.035 -153.3 -174.6 4.0 0.035 0.0
SER C:493 C:475 4.0 0.035 -154.7 -174.1 NA NA NA
SER E:493 E:475 4.0 0.035 -153.8 -173.5 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
2006-02-28 SER A:89 A:475 4.0 0.035 -165.4 152.6 4.0 0.035 0.0 HOH
3.626
OG
O
SER B:89 B:475 3.0 0.026 -173.9 174.2 NA NA NA
SER C:89 C:475 4.0 0.035 -167.2 -176.8 NA NA NA
SER D:89 D:475 4.0 0.035 E 169.7 179.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 SER A:475 A:475 3.0 0.026 -164.0 162.2