Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61083782 | . | T | A | CCDS31576.1:NM_001923.4:c.1385aAc>aTc_NP_001914.3:p.462N>I | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ASN | A:462 | A:462 | 44.0 | 0.275 | E | -86.0 | 135.1 | 44.0 | 0.275 | 0.0 | ||||||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ASN | B:462 | Y:462 | 24.0 | 0.15 | E | -76.4 | 142.9 | 24.0 | 0.15 | 0.0 | ||||||
| ASN | D:462 | B:462 | 25.0 | 0.156 | E | -77.6 | 143.7 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ASN | A:462 | A:462 | 38.0 | 0.237 | E | -71.9 | 134.2 | 38.0 | 0.237 | 0.0 | ||||||
| ASN | B:462 | B:462 | 40.0 | 0.25 | E | -72.1 | 134.4 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ASN | A:462 | A:462 | 39.0 | 0.244 | E | -74.3 | 151.8 | 39.0 | 0.244 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ASN | A:462 | A:462 | 49.0 | 0.306 | -120.1 | 93.3 | 49.0 | 0.306 | 0.0 | |||||||
| ASN | B:462 | B:462 | 51.0 | 0.319 | -119.9 | 90.9 | NA | NA | NA | ||||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ASN | A:462 | A:462 | 48.0 | 0.3 | E | -75.1 | 133.8 | 48.0 | 0.3 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ASN | B:462 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ASN | A:462 | A:462 | 45.0 | 0.281 | E | -86.7 | 130.1 | 45.0 | 0.281 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ASN | B:462 | Y:462 | 37.0 | 0.231 | -66.9 | 142.2 | 37.0 | 0.231 | 0.0 | |||||||
| ASN | E:462 | B:462 | 29.0 | 0.181 | -66.4 | 142.2 | NA | NA | NA | ||||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ASN | A:462 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| ASN | D:462 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ASN | G:462 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| ASN | J:462 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | Z:462 | d:462 | 57.0 | 0.356 | E | -82.1 | 142.8 | 57.0 | 0.356 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ASN | A:464 | A:462 | 45.0 | 0.281 | E | -71.2 | 135.7 | 45.0 | 0.281 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ASN | A:464 | A:462 | 62.0 | 0.388 | E | -75.8 | 118.9 | 62.0 | 0.388 | 0.0 | ||||||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | T:465 | d:462 | 59.0 | 0.369 | E | -82.1 | 142.5 | 59.0 | 0.369 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | N:465 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | Z:465 | d:462 | 61.0 | NA | E | -87.5 | 136.0 | 61.0 | NA | NA | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | Z:465 | d:462 | 63.0 | NA | E | -87.6 | 136.0 | 63.0 | NA | NA | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASN | A:466 | A:462 | 35.0 | 0.219 | E | -89.4 | 108.1 | 35.0 | 0.219 | 0.0 | ||||||
| ASN | C:466 | C:462 | 35.0 | 0.219 | E | -89.2 | 108.0 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:466 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:485 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:485 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:485 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | L:485 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASN | C:481 | C:462 | 35.0 | 0.219 | E | -89.6 | 108.1 | 35.0 | 0.219 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ASN | A:481 | A:462 | 61.0 | 0.381 | E | -81.3 | 146.4 | 61.0 | 0.381 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | A:481 | A:462 | 70.0 | NA | E | -90.5 | 143.6 | 70.0 | NA | NA | ||||||
| ASN | E:481 | E:462 | 68.0 | NA | E | -90.5 | 143.5 | NA | NA | NA | |||||||||||||
| ASN | I:481 | I:462 | 69.0 | NA | E | -90.5 | 143.6 | NA | NA | NA | |||||||||||||
| ASN | M:481 | M:462 | 70.0 | NA | E | -90.5 | 143.5 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:480 | A:462 | 35.0 | 0.219 | E | -78.0 | 134.3 | 35.0 | 0.219 | 0.0 |
HOH |
4.981 |
CB |
O |
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| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:480 | A:462 | 39.0 | 0.244 | E | -83.2 | 139.8 | 39.0 | 0.244 | 0.0 |
HOH |
2.946 |
N |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:480 | A:462 | 49.0 | 0.306 | E | -92.2 | 127.9 | 49.0 | 0.306 | 0.0 |
HOH |
2.950 |
N |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:480 | A:462 | 32.0 | 0.2 | E | -74.3 | 127.8 | 32.0 | 0.2 | 0.0 | ||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:480 | A:462 | 34.0 | 0.212 | E | -71.1 | 129.8 | 34.0 | 0.212 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:480 | A:462 | 34.0 | 0.212 | E | -74.7 | 127.2 | 34.0 | 0.212 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ASN | A:480 | A:462 | 36.0 | 0.225 | E | -122.2 | 116.7 | 36.0 | 0.225 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ASN | A:461 | A:462 | 38.0 | 0.237 | E | -79.2 | 142.3 | 38.0 | 0.237 | 0.0 |
HOH |
4.437 |
N |
O |
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| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 30.0 | 0.188 | -134.2 | 143.1 | 30.0 | 0.188 | 0.0 | |||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 27.0 | 0.169 | -118.6 | 132.3 | 27.0 | 0.169 | 0.0 | |||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 64.0 | 0.4 | -68.4 | 76.9 | 64.0 | 0.4 | 0.0 | |||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 38.0 | 0.237 | -115.6 | 72.9 | 38.0 | 0.237 | 0.0 | |||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 35.0 | 0.219 | -114.7 | 69.3 | 35.0 | 0.219 | 0.0 | |||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 45.0 | 0.281 | -152.3 | 65.8 | 45.0 | 0.281 | 0.0 | |||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 42.0 | 0.263 | -91.3 | 80.3 | 42.0 | 0.263 | 0.0 | |||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 40.0 | 0.25 | -165.2 | 60.1 | 40.0 | 0.25 | 0.0 | |||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:465 | A:462 | 51.0 | 0.319 | -95.3 | 83.4 | 51.0 | 0.319 | 0.0 | |||||||
| ASN | B:465 | B:462 | 49.0 | 0.306 | E | -68.5 | 104.0 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:462 | A:462 | 39.0 | 0.244 | E | -80.6 | 136.2 | 39.0 | 0.244 | 0.0 | ||||||
| ASN | B:462 | B:462 | 35.0 | 0.219 | E | -68.8 | 119.4 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:462 | A:462 | 37.0 | 0.231 | B | -122.2 | 164.8 | 37.0 | 0.231 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ASN | A:462 | A:462 | 34.0 | 0.212 | E | -89.3 | 108.1 | 34.0 | 0.212 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:481 | A:462 | 29.0 | 0.181 | -85.7 | 153.6 | 29.0 | 0.181 | 0.0 | |||||||
| ASN | C:481 | C:462 | 31.0 | 0.194 | -86.2 | 153.0 | NA | NA | NA | ||||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:481 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:481 | A:462 | 41.0 | 0.256 | E | -81.8 | 124.4 | 41.0 | 0.256 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:481 | A:462 | 55.0 | 0.344 | E | -86.1 | 135.6 | 55.0 | 0.344 | 0.0 | ||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ASN | A:472 | A:462 | 49.0 | 0.306 | E | -82.3 | 140.1 | 49.0 | 0.306 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ASN | A:472 | A:462 | 65.0 | 0.406 | E | -67.4 | 150.7 | 65.0 | 0.406 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:480 | A:462 | 36.0 | 0.225 | E | -60.8 | 149.8 | 36.0 | 0.225 | 0.0 | ||||||
| ASN | C:480 | C:462 | 37.0 | 0.231 | E | -61.5 | 150.0 | NA | NA | NA | |||||||||||||
| ASN | E:480 | E:462 | 39.0 | 0.244 | E | -60.7 | 148.5 | NA | NA | NA | |||||||||||||
| 2b5n | 1 | 13435359 | 99.38 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:76 | A:462 | 34.0 | 0.212 | E | -82.1 | 117.0 | 34.0 | 0.212 | 0.0 | ||||||
| ASN | B:76 | B:462 | 31.0 | 0.194 | E | -78.9 | 138.5 | NA | NA | NA | |||||||||||||
| ASN | C:76 | C:462 | 26.0 | 0.163 | E | -77.0 | 137.7 | NA | NA | NA | |||||||||||||
| ASN | D:76 | D:462 | 33.0 | 0.206 | E | -61.9 | 124.8 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ASN | A:462 | A:462 | 41.0 | 0.256 | E | -71.0 | 129.1 | |