Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61084001 . C A CCDS31576.1:NM_001923.4:c.1264Gat>Tat_NP_001914.3:p.422D>Y Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 ASP A:422 A:422 26.0 0.173 -66.1 137.7 26.0 0.173 0.0 HOH
7.680
N
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 ASP B:422 Y:422 23.0 0.153 B -56.9 148.4 23.0 0.153 0.0
ASP D:422 B:422 23.0 0.153 B -57.4 148.7 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 ASP A:422 A:422 10.0 0.067 B -67.7 147.0 10.0 0.067 0.0
ASP B:422 B:422 10.0 0.067 B -68.0 143.4 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 ASP A:422 A:422 22.0 0.147 -59.7 136.5 22.0 0.147 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 ASP A:422 A:422 17.0 0.113 B -49.0 132.7 17.0 0.113 0.0
ASP B:422 B:422 22.0 0.147 B -49.2 129.5 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 ASP A:422 A:422 22.0 0.147 -63.2 139.2 22.0 0.147 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 ASP B:422 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 ASP A:422 A:422 26.0 0.173 B -71.3 158.3 26.0 0.173 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 ASP B:422 Y:422 28.0 0.187 -60.3 145.9 28.0 0.187 0.0
ASP E:422 B:422 27.0 0.18 -60.1 144.8 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 ASP A:422 NA:NA DO NA DO DO DO NA NA NA
ASP D:422 NA:NA DO NA DO DO DO NA NA NA
ASP G:422 NA:NA DO NA DO DO DO NA NA NA
ASP J:422 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 ASP Z:422 d:422 38.0 0.253 -85.3 87.5 38.0 0.253 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 ASP A:424 A:422 32.0 0.213 -68.1 144.4 32.0 0.213 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 ASP A:424 A:422 32.0 0.213 -59.3 110.9 32.0 0.213 0.0
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 ASP T:425 d:422 34.0 0.227 -84.8 87.3 34.0 0.227 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 ASP N:425 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 ASP Z:425 d:422 30.0 NA -93.3 89.7 30.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 ASP Z:425 d:422 29.0 NA -93.2 89.5 29.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 ASP A:426 A:422 18.0 0.12 -64.3 168.6 18.0 0.12 0.0
ASP C:426 C:422 17.0 0.113 -64.3 168.6 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 ASP K:426 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 ASP K:445 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 ASP K:445 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 ASP K:445 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 ASP L:445 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 ASP C:441 C:422 18.0 0.12 -64.3 168.8 18.0 0.12 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 ASP A:441 A:422 27.0 0.18 -77.9 115.6 27.0 0.18 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 ASP A:441 A:422 22.0 NA -74.6 140.5 22.0 NA NA
ASP E:441 E:422 21.0 NA -74.6 140.4 NA NA NA
ASP I:441 I:422 21.0 NA -74.7 140.4 NA NA NA
ASP M:441 M:422 22.0 NA -74.6 140.4 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ASP A:440 A:422 21.0 0.14 -70.8 159.1 21.0 0.14 0.0 HOH
9.194
OD2
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ASP A:440 A:422 24.0 0.16 -64.8 156.7 24.0 0.16 0.0 HOH
5.497
OD1
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ASP A:440 A:422 31.0 0.207 -61.7 155.2 31.0 0.207 0.0 HOH
4.121
N
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ASP A:440 A:422 26.0 0.173 -70.1 129.1 26.0 0.173 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ASP A:440 A:422 25.0 0.167 B -67.1 135.3 25.0 0.167 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ASP A:440 A:422 28.0 0.187 -69.7 123.5 28.0 0.187 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 ASP A:440 A:422 26.0 0.173 -97.3 139.1 26.0 0.173 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 ASP A:421 A:422 23.0 0.153 B -56.0 149.7 23.0 0.153 0.0 HOH
6.772
OD1
O
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 52.0 0.226 -32.3 131.4 52.0 0.226 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 53.0 0.23 -91.8 163.2 53.0 0.23 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 28.0 0.122 -133.4 150.2 28.0 0.122 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 41.0 0.178 -113.3 147.0 41.0 0.178 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 35.0 0.152 -116.8 113.0 35.0 0.152 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 40.0 0.174 -105.1 137.0 40.0 0.174 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 39.0 0.17 -118.4 163.7 39.0 0.17 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 33.0 0.143 -118.4 119.4 33.0 0.143 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 TYR A:425 A:422 52.0 0.226 -37.0 100.3 52.0 0.226 0.0
TYR B:425 B:422 42.0 0.183 -49.7 158.2 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 TYR A:422 A:422 62.0 0.27 -83.0 147.6 62.0 0.27 0.0
TYR B:422 B:422 65.0 0.283 -47.6 158.2 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 TYR A:422 A:422 53.0 0.23 -153.2 149.3 53.0 0.23 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 TYR A:422 A:422 48.0 0.209 -64.4 168.6 48.0 0.209 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASP A:441 A:422 26.0 0.173 B -90.7 164.0 26.0 0.173 0.0
ASP C:441 C:422 25.0 0.167 B -90.8 163.0 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASP A:441 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASP A:441 A:422 18.0 0.12 -76.2 126.9 18.0 0.12 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASP A:441 A:422 18.0 0.12 B -116.3 155.3 18.0 0.12 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 ASP A:432 A:422 21.0 0.14 -66.5 117.7 21.0 0.14 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 ASP A:432 A:422 48.0 0.32 -129.6 127.3 48.0 0.32 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 TYR A:440 A:422 56.0 0.243 B -69.3 151.2 56.0 0.243 0.0
TYR C:440 C:422 60.0 0.261 B -68.6 150.5 NA NA NA
TYR E:440 E:422 61.0 0.265 B -68.8 149.5 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
2006-02-28 TYR A:36 A:422 71.0 0.309 -71.3 140.2 71.0 0.309 0.0
TYR B:36 B:422 76.0 0.33 -108.5 107.6 NA NA NA
TYR C:36 C:422 77.0 0.335 -72.0 135.1 NA NA NA
TYR D:36 D:422 64.0 0.278 B -81.7 133.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ASP A:422 A:422 19.0 0.127 -69.3 129.4