Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61084025 . G A CCDS31576.1:NM_001923.4:c.1240Cgg>Tgg_NP_001914.3:p.414R>W Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 ARG A:414 A:414 73.0 0.324 -102.8 109.8 73.0 0.324 0.0 HOH
 7.767
 CD
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 ARG B:414 Y:414 90.0 0.4 -138.4 97.3 90.0 0.4 0.0
ARG D:414 B:414 88.0 0.391 -138.6 95.9 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 ARG A:414 A:414 83.0 0.369 -117.2 102.5 83.0 0.369 0.0
ARG B:414 B:414 79.0 0.351 -118.1 102.3 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 ARG A:414 A:414 88.0 0.391 -105.5 100.5 88.0 0.391 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 ARG A:414 A:414 69.0 0.307 -123.4 112.2 69.0 0.307 0.0
ARG B:414 B:414 89.0 0.396 -118.2 122.2 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 ARG A:414 A:414 78.0 0.347 -101.3 117.7 78.0 0.347 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 ARG B:414 NA:NA DO NA DO DO DO NA NA NA
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 ARG A:414 A:414 87.0 0.387 -107.4 96.0 87.0 0.387 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 ARG B:414 Y:414 57.0 0.253 -107.1 101.0 57.0 0.253 0.0
ARG E:414 B:414 71.0 0.316 -107.1 100.8 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 ARG A:414 NA:NA DO NA DO DO DO NA NA NA
ARG D:414 NA:NA DO NA DO DO DO NA NA NA
ARG G:414 NA:NA DO NA DO DO DO NA NA NA
ARG J:414 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:414 d:414 12.0 NA -107.0 94.5 12.0 NA NA
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 ARG A:416 A:414 88.0 0.391 -93.7 112.2 88.0 0.391 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 ARG A:416 A:414 72.0 0.32 -84.9 141.8 72.0 0.32 0.0
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 ARG T:417 d:414 12.0 NA -106.8 95.2 12.0 NA NA
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 ARG N:417 NA:NA DO NA DO DO DO NA NA NA
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 ARG Z:417 d:414 42.0 NA -88.0 92.2 42.0 NA NA
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 ARG Z:417 d:414 42.0 NA -87.9 92.2 42.0 NA NA
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG A:418 A:414 72.0 0.32 -157.6 84.9 72.0 0.32 0.0
ARG C:418 C:414 71.0 0.316 -157.9 84.8 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:418 NA:NA DO NA DO DO DO NA NA NA
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:437 NA:NA DO NA DO DO DO NA NA NA
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:437 NA:NA DO NA DO DO DO NA NA NA
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 ARG K:437 NA:NA DO NA DO DO DO NA NA NA
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 ARG L:437 NA:NA DO NA DO DO DO NA NA NA
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 ARG C:433 C:414 73.0 0.324 -157.8 84.4 73.0 0.324 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 ARG A:433 A:414 13.0 NA -96.9 113.6 13.0 NA NA
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 ARG A:433 A:414 41.0 NA -95.7 97.7 41.0 NA NA
ARG E:433 E:414 40.0 NA -95.7 97.7 NA NA NA
ARG I:433 I:414 40.0 NA -95.7 97.7 NA NA NA
ARG M:433 M:414 40.0 NA -95.7 97.8 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:432 A:414 99.0 0.44 -106.8 96.4 99.0 0.44 0.0 HOH
 4.681
 NH1
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:432 A:414 88.0 0.391 -106.8 84.5 88.0 0.391 0.0 HOH
 5.189
 N
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 ARG A:432 A:414 54.0 0.24 -112.0 108.0 54.0 0.24 0.0 HOH
 2.634
 NH2
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:432 A:414 72.0 0.32 -117.7 94.9 72.0 0.32 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:432 A:414 69.0 0.307 -121.3 95.4 69.0 0.307 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 ARG A:432 A:414 73.0 0.324 -117.8 94.0 73.0 0.324 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 ARG A:432 A:414 68.0 0.302 -117.0 114.2 68.0 0.302 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 ARG A:413 A:414 83.0 0.369 -139.4 96.0 83.0 0.369 0.0 HOH
 7.168
 N
 O
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 54.0 0.24 -85.6 138.1 54.0 0.24 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 41.0 0.182 -133.2 109.7 41.0 0.182 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 43.0 0.191 -116.6 -127.4 43.0 0.191 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 54.0 0.24 -74.7 111.9 54.0 0.24 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 47.0 0.209 -75.3 145.0 47.0 0.209 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 47.0 0.209 -64.2 115.9 47.0 0.209 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 43.0 0.191 -90.7 149.9 43.0 0.191 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 60.0 0.267 -99.3 111.7 60.0 0.267 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 ARG A:417 A:414 38.0 0.169 -138.9 144.2 38.0 0.169 0.0
ARG B:417 B:414 56.0 0.249 -116.5 131.4 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:414 A:414 71.0 0.316 -103.1 109.0 71.0 0.316 0.0
ARG B:414 B:414 63.0 0.28 -94.5 114.6 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 ARG A:414 A:414 46.0 0.204 -102.5 90.7 46.0 0.204 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 ARG A:414 A:414 69.0 0.307 -157.6 84.9 69.0 0.307 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:433 A:414 76.0 0.338 -104.4 125.3 76.0 0.338 0.0
ARG C:433 C:414 75.0 0.333 -103.9 125.1 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:433 NA:NA DO NA DO DO DO NA NA NA
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:433 A:414 67.0 0.298 -112.0 117.2 67.0 0.298 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 ARG A:433 A:414 56.0 0.249 -110.5 125.0 56.0 0.249 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 ARG A:424 A:414 70.0 0.311 -107.2 86.9 70.0 0.311 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 ARG A:424 A:414 16.0 0.071 -140.3 130.1 16.0 0.071 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 ARG A:432 A:414 70.0 0.311 -106.1 100.0 70.0 0.311 0.0
ARG C:432 C:414 73.0 0.324 -109.0 102.0 NA NA NA
ARG E:432 E:414 72.0 0.32 -107.4 100.5 NA NA NA
2b5n 1 13435359 99.38 0.0 X-RAY
 2006-02-28 ARG A:28 A:414 60.0 0.267 -120.8 109.7 60.0 0.267 0.0
ARG B:28 B:414 69.0 0.307 -113.4 80.7 NA NA NA
ARG C:28 C:414 66.0 0.293 -104.8 91.2 NA NA NA
ARG D:28 D:414 74.0 0.329 -108.5 100.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ARG A:414 A:414 94.0 0.418 -97.8 100.3