Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61089871 . C A CCDS31576.1:NM_001923.4:c.1019aGt>aTt_NP_001914.3:p.340S>I Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 SER A:340 NA:NA DO NA DO DO DO NA NA NA
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 SER B:340 Y:340 75.0 0.652 -84.1 135.3 75.0 0.652 0.0
SER D:340 NA:NA DO NA DO DO DO NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 SER A:340 A:340 63.0 0.548 -72.9 148.8 63.0 0.548 0.0
SER B:340 B:340 63.0 0.548 -73.4 148.5 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 SER A:340 A:340 52.0 NA -70.1 153.4 52.0 NA NA
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 SER A:340 A:340 46.0 0.4 -61.7 97.5 38.0 0.33 0.07 C:Q9BW61:0.07
SER B:340 B:340 68.0 0.591 -46.8 122.7 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 SER A:340 A:340 57.0 0.496 -76.8 169.8 57.0 0.496 0.0
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 SER B:340 B:340 46.0 0.4 -79.1 -164.1 46.0 0.4 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 SER A:340 A:340 64.0 0.557 -124.1 164.7 64.0 0.557 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 SER B:340 Y:340 95.0 0.826 -65.9 127.5 95.0 0.826 0.0
SER E:340 B:340 74.0 0.643 -66.3 127.4 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 SER A:340 NA:NA DO NA DO DO DO NA NA NA
SER D:340 NA:NA DO NA DO DO DO NA NA NA
SER G:340 NA:NA DO NA DO DO DO NA NA NA
SER J:340 NA:NA DO NA DO DO DO NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 SER Z:340 d:340 38.0 0.33 -68.4 169.4 38.0 0.33 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 SER A:342 A:340 68.0 0.591 -59.0 146.6 68.0 0.591 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 SER A:342 A:340 52.0 0.452 -84.4 160.1 52.0 0.452 0.0 HOH
 6.064
 O
 O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 SER T:343 d:340 41.0 0.357 -70.4 165.7 41.0 0.357 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 SER N:343 d:340 43.0 0.374 -72.2 163.7 43.0 0.374 0.0
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 SER Z:343 d:340 44.0 0.383 -71.1 164.8 44.0 0.383 0.0
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 SER Z:343 d:340 44.0 0.383 -71.2 164.9 44.0 0.383 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 SER A:344 A:340 52.0 0.452 -76.4 145.8 52.0 0.452 0.0
SER C:344 C:340 51.0 0.443 -76.1 145.5 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 SER K:344 K:340 46.0 0.4 -82.5 165.1 46.0 0.4 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 SER K:363 K:340 54.0 0.47 -79.6 165.0 54.0 0.47 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 SER K:363 K:340 37.0 0.322 -85.4 166.8 37.0 0.322 0.0
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 SER K:363 K:340 51.0 0.443 -83.2 167.2 51.0 0.443 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 SER L:363 K:340 57.0 0.496 -83.5 167.2 57.0 0.496 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 SER C:359 C:340 52.0 0.452 -76.3 145.7 52.0 0.452 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 SER A:359 NA:NA DO NA DO DO DO NA NA NA
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 SER A:359 A:340 68.0 NA -70.3 154.7 68.0 NA NA
SER E:359 E:340 67.0 NA -70.3 154.8 NA NA NA
SER I:359 I:340 67.0 NA -70.3 154.7 NA NA NA
SER M:359 M:340 68.0 NA -70.3 154.7 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 SER A:358 A:340 54.0 0.47 -83.7 134.3 54.0 0.47 0.0 PG4
 7.226
 N
 C4
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 SER A:358 A:340 52.0 0.452 -76.2 145.8 52.0 0.452 0.0 PG4
HOH
 7.319
2.651
 N
OG
 C4
O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 SER A:358 A:340 50.0 0.435 -79.3 151.1 50.0 0.435 0.0 PG4
HOH
 7.070
4.580
 N
CA
 C5
O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 SER A:358 A:340 42.0 0.365 -71.2 144.8 42.0 0.365 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 SER A:358 A:340 46.0 0.4 -76.7 137.2 46.0 0.4 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 SER A:358 A:340 44.0 0.383 -70.9 143.1 44.0 0.383 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 SER A:358 NA:NA DO NA DO DO DO NA NA NA
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 SER A:339 NA:NA DO NA DO DO DO NA NA NA
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 49.0 0.426 -78.9 108.7 49.0 0.426 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 53.0 0.461 -77.0 130.0 53.0 0.461 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 53.0 0.461 -71.3 159.1 53.0 0.461 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 54.0 0.47 -72.8 156.7 54.0 0.47 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 41.0 0.357 E -95.7 103.8 41.0 0.357 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 47.0 0.409 E -113.8 110.4 47.0 0.409 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 45.0 0.391 -97.3 126.4 45.0 0.391 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 56.0 0.487 -63.3 158.8 56.0 0.487 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 SER A:343 A:340 53.0 0.461 -74.4 161.1 53.0 0.461 0.0
SER B:343 B:340 52.0 0.452 -77.4 145.7 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 SER A:340 A:340 48.0 0.417 -78.4 103.8 48.0 0.417 0.0
SER B:340 B:340 42.0 0.365 -47.5 102.0 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 SER A:340 A:340 57.0 0.496 -76.4 156.8 57.0 0.496 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 SER A:340 A:340 52.0 0.452 -37.7 115.9 52.0 0.452 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 SER A:359 A:340 66.0 0.574 -74.9 172.5 66.0 0.574 0.0
SER C:359 C:340 67.0 0.583 -80.5 135.5 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 SER A:359 A:340 44.0 0.383 -70.2 162.3 44.0 0.383 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 SER A:359 A:340 52.0 0.452 -93.1 138.0 52.0 0.452 0.0 MES
 7.647
 N
 C7
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 SER A:359 A:340 56.0 0.487 -86.8 139.6 56.0 0.487 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 SER A:350 A:340 53.0 0.461 -76.3 145.7 53.0 0.461 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 SER A:350 A:340 64.0 0.557 -58.6 155.2 64.0 0.557 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 SER A:358 A:340 32.0 0.278 -78.2 136.5 32.0 0.278 0.0
SER C:358 C:340 32.0 0.278 -78.2 136.8 NA NA NA
SER E:358 E:340 32.0 0.278 -78.6 136.7 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 SER B:340 B:340 55.0 0.478 -92.2 144.9 55.0 0.478 0.0 HOH
 3.014
 OG
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 SER B:340 B:340 53.0 0.461 -82.6 148.0 53.0 0.461 0.0 HOH
 5.187
 OG
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 SER A:344 A:340 51.0 0.443 -76.5 143.8 51.0 0.443 0.0
SER D:344 D:340 35.0 0.304 -80.2 144.5 NA NA NA
SER G:344 G:340 53.0 0.461 -90.0 143.5 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 SER A:360 A:340 70.0 0.609 50.7 53.3 70.0 0.609 0.0
SER D:360 NA:NA DO NA DO DO DO NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 SER A:360 A:340 58.0 0.504 -76.9 178.0 58.0 0.504 0.0
SER D:360 D:340 39.0 0.339 72.9 -170.1 NA NA NA
SER G:360 G:340 67.0 0.583 -69.1 138.8 NA NA NA
SER J:360 J:340 40.0 0.348 73.1 -170.2 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 SER A:360 A:340 64.0 0.557 -71.7 158.2 64.0 0.557 0.0
SER D:360 D:340 57.0 0.496 -72.6 158.0 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 SER A:368 A:340 54.0 0.47 -71.1 153.4 54.0 0.47 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 SER A:368 A:340 64.0 0.557 -73.6 145.8 64.0 0.557 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 SER A:368 A:340 58.0 0.504 -73.1 166.0 58.0 0.504 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 SER A:368 A:340 69.0 0.6 64.6 99.4 69.0 0.6 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 SER A:368 A:340 51.0 0.443 -70.5 155.8 51.0 0.443 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 SER A:368 A:340 64.0 0.557 -67.1 148.4 64.0 0.557 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 SER A:368 A:340 57.0 0.496 -63.6 148.7 57.0 0.496 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 SER A:368 A:340 60.0 0.522 -65.7 146.8 60.0 0.522 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 SER A:340 A:340 54.0 0.47 -75.7 150.1