Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61090546 . C A CCDS31576.1:NM_001923.4:c.942ttG>ttT_NP_001914.3:p.314L>F Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 LEU A:314 A:314 5.0 0.029 E -140.0 131.6 5.0 0.029 0.0 HOH
4.616
CD2
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 LEU B:314 Y:314 8.0 0.047 E -128.4 143.9 8.0 0.047 0.0
LEU D:314 B:314 8.0 0.047 E -127.9 144.9 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 LEU A:314 A:314 3.0 0.018 E -95.8 153.1 3.0 0.018 0.0
LEU B:314 B:314 3.0 0.018 E -96.2 153.3 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 LEU A:314 A:314 4.0 0.024 E -134.2 152.9 4.0 0.024 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 LEU A:314 A:314 7.0 0.041 E -153.4 142.1 7.0 0.041 0.0
LEU B:314 B:314 7.0 0.041 E -152.6 137.6 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 LEU A:314 A:314 3.0 0.018 E -123.2 149.3 3.0 0.018 0.0 EPE
EPE
5.278
5.079
O
N
C3
O1S
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 LEU B:314 B:314 3.0 0.018 -105.5 158.0 3.0 0.018 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 LEU A:314 A:314 6.0 0.035 E -133.3 143.6 6.0 0.035 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 LEU B:314 Y:314 6.0 0.035 E -134.2 149.5 6.0 0.035 0.0
LEU E:314 B:314 4.0 0.024 E -134.8 149.9 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 LEU A:314 A:314 3.0 0.018 E -137.5 164.7 3.0 0.018 0.0
LEU D:314 D:314 2.0 0.012 E -130.6 164.2 NA NA NA
LEU G:314 G:314 3.0 0.018 E -130.0 164.7 NA NA NA
LEU J:314 J:314 2.0 0.012 E -124.5 159.6 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 LEU Z:314 d:314 4.0 0.024 E -144.4 147.8 4.0 0.024 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 LEU A:316 A:314 8.0 0.047 E -127.6 132.3 8.0 0.047 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 LEU A:316 A:314 9.0 0.053 E -124.7 150.5 9.0 0.053 0.0 HOH
4.591
CD2
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 LEU T:317 d:314 4.0 0.024 E -145.5 148.0 4.0 0.024 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 LEU N:317 d:314 4.0 0.024 E -144.3 143.1 4.0 0.024 0.0
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 LEU Z:317 d:314 3.0 0.018 E -137.7 140.8 3.0 0.018 0.0
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 LEU Z:317 d:314 3.0 0.018 E -137.6 140.8 3.0 0.018 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 LEU A:318 A:314 2.0 0.012 E -125.3 141.8 2.0 0.012 0.0
LEU C:318 C:314 2.0 0.012 E -125.4 141.8 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 LEU K:318 K:314 4.0 0.024 E -131.6 147.5 4.0 0.024 0.0
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 LEU K:337 K:314 8.0 0.047 E -128.8 144.9 8.0 0.047 0.0
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 LEU K:337 K:314 5.0 0.029 E -136.5 145.2 5.0 0.029 0.0
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 LEU K:337 K:314 6.0 0.035 E -132.4 141.6 6.0 0.035 0.0
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 LEU L:337 K:314 5.0 0.029 E -131.4 141.3 5.0 0.029 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 LEU C:333 C:314 3.0 0.018 E -125.3 142.1 3.0 0.018 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 LEU A:333 A:314 5.0 0.029 E -145.9 146.2 5.0 0.029 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 LEU A:333 A:314 30.0 NA E -121.9 129.4 30.0 NA NA
LEU E:333 E:314 29.0 NA E -121.9 129.4 NA NA NA
LEU I:333 I:314 29.0 NA E -121.9 129.5 NA NA NA
LEU M:333 M:314 30.0 NA E -121.8 129.5 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 LEU A:332 A:314 2.0 0.012 E -119.7 141.5 2.0 0.012 0.0 HOH
4.677
CD2
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 LEU A:332 A:314 3.0 0.018 E -125.4 142.1 3.0 0.018 0.0 HOH
4.692
CD2
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 LEU A:332 A:314 4.0 0.024 E -129.5 137.4 4.0 0.024 0.0 HOH
2.728
N
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 LEU A:332 A:314 4.0 0.024 E -126.4 146.8 4.0 0.024 0.0 HOH
4.792
CD2
O
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 LEU A:332 A:314 5.0 0.029 E -126.8 142.0 5.0 0.029 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 LEU A:332 A:314 4.0 0.024 E -123.7 148.3 4.0 0.024 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 LEU A:332 A:314 10.0 0.059 E -143.8 142.7 10.0 0.059 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 LEU A:313 A:314 5.0 0.029 E -126.9 140.4 5.0 0.029 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 8.0 0.047 E -137.2 111.0 8.0 0.047 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 9.0 0.053 E -132.0 125.0 9.0 0.053 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 7.0 0.041 E -159.2 135.8 7.0 0.041 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 6.0 0.035 E -128.5 140.1 6.0 0.035 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 7.0 0.041 E -135.4 137.2 7.0 0.041 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 8.0 0.047 E -123.4 140.1 8.0 0.047 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 5.0 0.029 E -153.9 121.9 5.0 0.029 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 10.0 0.059 E -130.3 134.5 10.0 0.059 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 LEU A:317 A:314 7.0 0.041 E -146.2 137.5 7.0 0.041 0.0
LEU B:317 B:314 7.0 0.041 E -147.3 142.1 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 LEU A:314 A:314 8.0 0.047 E -143.3 120.1 8.0 0.047 0.0
LEU B:314 B:314 3.0 0.018 E -169.3 138.1 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 LEU A:314 A:314 6.0 0.035 E -147.5 136.9 6.0 0.035 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 LEU A:314 A:314 6.0 0.035 E -148.0 126.2 6.0 0.035 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 LEU A:333 A:314 3.0 0.018 -110.2 174.5 3.0 0.018 0.0
LEU C:333 C:314 2.0 0.012 E -109.9 163.4 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 LEU A:333 A:314 3.0 0.018 E -108.4 145.7 3.0 0.018 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 LEU A:333 A:314 3.0 0.018 E -129.6 143.2 3.0 0.018 0.0 MES
5.022
O
C5
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 LEU A:333 A:314 4.0 0.024 E -118.4 144.5 4.0 0.024 0.0 HOH
6.792
O
O
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 LEU A:324 A:314 3.0 0.018 E -125.9 141.3 3.0 0.018 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 LEU A:324 A:314 10.0 0.059 E -126.5 141.2 10.0 0.059 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 LEU A:332 A:314 4.0 0.024 E -149.2 149.9 4.0 0.024 0.0
LEU C:332 C:314 4.0 0.024 E -147.5 150.1 NA NA NA
LEU E:332 E:314 4.0 0.024 E -148.5 150.3 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
2019-12-18 LEU B:314 B:314 5.0 0.029 E -107.7 140.2 5.0 0.029 0.0 HOH
2.847
O
O
6ue5 2 Q16531 100.0 0.0 X-RAY
2019-12-18 LEU B:314 B:314 5.0 0.029 E -110.2 140.6 5.0 0.029 0.0 HOH
4.359
O
O
6td3 1 Q16531 100.0 0.0 X-RAY
2020-06-17 LEU A:318 A:314 5.0 0.029 E -100.5 149.9 5.0 0.029 0.0
LEU D:318 D:314 5.0 0.029 E -96.5 156.2 NA NA NA
LEU G:318 G:314 4.0 0.024 E -101.6 156.2 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
2016-02-24 LEU A:334 A:314 4.0 0.024 E -118.5 146.8 4.0 0.024 0.0 HOH
9.512
N
O
LEU D:334 D:314 6.0 0.035 E -118.4 146.2 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
2018-11-07 LEU A:334 A:314 4.0 0.024 E -134.3 150.0 4.0 0.024 0.0 HOH
9.713
H
O
LEU D:334 D:314 4.0 0.024 E -126.8 154.0 NA NA NA
LEU G:334 G:314 4.0 0.024 E -115.5 157.0 NA NA NA
LEU J:334 J:314 4.0 0.024 E -123.9 152.2 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
2018-11-07 LEU A:334 A:314 2.0 0.012 E -146.2 165.3 2.0 0.012 0.0
LEU D:334 D:314 3.0 0.018 E -137.9 164.4 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
2018-05-30 LEU A:342 A:314 4.0 0.024 E -124.2 147.6 4.0 0.024 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
2018-06-06 LEU A:342 A:314 4.0 0.024 E -124.5 150.9 4.0 0.024 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
2018-05-30 LEU A:342 A:314 3.0 0.018 E -134.6 150.8 3.0 0.018 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
2018-05-30 LEU A:342 A:314 3.0 0.018 E -96.6 154.5 3.0 0.018 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
2018-05-30 LEU A:342 A:314 5.0 0.029 E -128.0 148.6 5.0 0.029 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
2019-11-13 LEU A:342 A:314 4.0 0.024 E -127.5 143.8 4.0 0.024 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
2019-11-13 LEU A:342 A:314 4.0 0.024 E -132.7 144.1 4.0 0.024 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
2019-11-13 LEU A:342 A:314 4.0 0.024 E -130.1 147.4 4.0 0.024 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 LEU A:314 A:314 4.0 0.024 E -127.9 146.7