Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61090546 | . | C | A | CCDS31576.1:NM_001923.4:c.942ttG>ttT_NP_001914.3:p.314L>F | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | LEU | A:314 | A:314 | 5.0 | 0.029 | E | -140.0 | 131.6 | 5.0 | 0.029 | 0.0 |
HOH |
4.616 |
CD2 |
O |
||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | LEU | B:314 | Y:314 | 8.0 | 0.047 | E | -128.4 | 143.9 | 8.0 | 0.047 | 0.0 | ||||||
LEU | D:314 | B:314 | 8.0 | 0.047 | E | -127.9 | 144.9 | NA | NA | NA | |||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | LEU | A:314 | A:314 | 3.0 | 0.018 | E | -95.8 | 153.1 | 3.0 | 0.018 | 0.0 | ||||||
LEU | B:314 | B:314 | 3.0 | 0.018 | E | -96.2 | 153.3 | NA | NA | NA | |||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | LEU | A:314 | A:314 | 4.0 | 0.024 | E | -134.2 | 152.9 | 4.0 | 0.024 | 0.0 | ||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | LEU | A:314 | A:314 | 7.0 | 0.041 | E | -153.4 | 142.1 | 7.0 | 0.041 | 0.0 | ||||||
LEU | B:314 | B:314 | 7.0 | 0.041 | E | -152.6 | 137.6 | NA | NA | NA | |||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | LEU | A:314 | A:314 | 3.0 | 0.018 | E | -123.2 | 149.3 | 3.0 | 0.018 | 0.0 |
EPE EPE |
5.278 5.079 |
O N |
C3 O1S |
||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | LEU | B:314 | B:314 | 3.0 | 0.018 | -105.5 | 158.0 | 3.0 | 0.018 | 0.0 | |||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | LEU | A:314 | A:314 | 6.0 | 0.035 | E | -133.3 | 143.6 | 6.0 | 0.035 | 0.0 | ||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | LEU | B:314 | Y:314 | 6.0 | 0.035 | E | -134.2 | 149.5 | 6.0 | 0.035 | 0.0 | ||||||
LEU | E:314 | B:314 | 4.0 | 0.024 | E | -134.8 | 149.9 | NA | NA | NA | |||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | LEU | A:314 | A:314 | 3.0 | 0.018 | E | -137.5 | 164.7 | 3.0 | 0.018 | 0.0 | ||||||
LEU | D:314 | D:314 | 2.0 | 0.012 | E | -130.6 | 164.2 | NA | NA | NA | |||||||||||||
LEU | G:314 | G:314 | 3.0 | 0.018 | E | -130.0 | 164.7 | NA | NA | NA | |||||||||||||
LEU | J:314 | J:314 | 2.0 | 0.012 | E | -124.5 | 159.6 | NA | NA | NA | |||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | LEU | Z:314 | d:314 | 4.0 | 0.024 | E | -144.4 | 147.8 | 4.0 | 0.024 | 0.0 | ||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | LEU | A:316 | A:314 | 8.0 | 0.047 | E | -127.6 | 132.3 | 8.0 | 0.047 | 0.0 | ||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | LEU | A:316 | A:314 | 9.0 | 0.053 | E | -124.7 | 150.5 | 9.0 | 0.053 | 0.0 |
HOH |
4.591 |
CD2 |
O |
||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | LEU | T:317 | d:314 | 4.0 | 0.024 | E | -145.5 | 148.0 | 4.0 | 0.024 | 0.0 | ||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | LEU | N:317 | d:314 | 4.0 | 0.024 | E | -144.3 | 143.1 | 4.0 | 0.024 | 0.0 | ||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | LEU | Z:317 | d:314 | 3.0 | 0.018 | E | -137.7 | 140.8 | 3.0 | 0.018 | 0.0 | ||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | LEU | Z:317 | d:314 | 3.0 | 0.018 | E | -137.6 | 140.8 | 3.0 | 0.018 | 0.0 | ||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | LEU | A:318 | A:314 | 2.0 | 0.012 | E | -125.3 | 141.8 | 2.0 | 0.012 | 0.0 | ||||||
LEU | C:318 | C:314 | 2.0 | 0.012 | E | -125.4 | 141.8 | NA | NA | NA | |||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | LEU | K:318 | K:314 | 4.0 | 0.024 | E | -131.6 | 147.5 | 4.0 | 0.024 | 0.0 | ||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | LEU | K:337 | K:314 | 8.0 | 0.047 | E | -128.8 | 144.9 | 8.0 | 0.047 | 0.0 | ||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | LEU | K:337 | K:314 | 5.0 | 0.029 | E | -136.5 | 145.2 | 5.0 | 0.029 | 0.0 | ||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | LEU | K:337 | K:314 | 6.0 | 0.035 | E | -132.4 | 141.6 | 6.0 | 0.035 | 0.0 | ||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | LEU | L:337 | K:314 | 5.0 | 0.029 | E | -131.4 | 141.3 | 5.0 | 0.029 | 0.0 | ||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | LEU | C:333 | C:314 | 3.0 | 0.018 | E | -125.3 | 142.1 | 3.0 | 0.018 | 0.0 | ||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | LEU | A:333 | A:314 | 5.0 | 0.029 | E | -145.9 | 146.2 | 5.0 | 0.029 | 0.0 | ||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | LEU | A:333 | A:314 | 30.0 | NA | E | -121.9 | 129.4 | 30.0 | NA | NA | ||||||
LEU | E:333 | E:314 | 29.0 | NA | E | -121.9 | 129.4 | NA | NA | NA | |||||||||||||
LEU | I:333 | I:314 | 29.0 | NA | E | -121.9 | 129.5 | NA | NA | NA | |||||||||||||
LEU | M:333 | M:314 | 30.0 | NA | E | -121.8 | 129.5 | NA | NA | NA | |||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | LEU | A:332 | A:314 | 2.0 | 0.012 | E | -119.7 | 141.5 | 2.0 | 0.012 | 0.0 |
HOH |
4.677 |
CD2 |
O |
||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | LEU | A:332 | A:314 | 3.0 | 0.018 | E | -125.4 | 142.1 | 3.0 | 0.018 | 0.0 |
HOH |
4.692 |
CD2 |
O |
||
3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | LEU | A:332 | A:314 | 4.0 | 0.024 | E | -129.5 | 137.4 | 4.0 | 0.024 | 0.0 |
HOH |
2.728 |
N |
O |
||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | LEU | A:332 | A:314 | 4.0 | 0.024 | E | -126.4 | 146.8 | 4.0 | 0.024 | 0.0 |
HOH |
4.792 |
CD2 |
O |
||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | LEU | A:332 | A:314 | 5.0 | 0.029 | E | -126.8 | 142.0 | 5.0 | 0.029 | 0.0 | ||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | LEU | A:332 | A:314 | 4.0 | 0.024 | E | -123.7 | 148.3 | 4.0 | 0.024 | 0.0 | ||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | LEU | A:332 | A:314 | 10.0 | 0.059 | E | -143.8 | 142.7 | 10.0 | 0.059 | 0.0 | ||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | LEU | A:313 | A:314 | 5.0 | 0.029 | E | -126.9 | 140.4 | 5.0 | 0.029 | 0.0 | ||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 8.0 | 0.047 | E | -137.2 | 111.0 | 8.0 | 0.047 | 0.0 | ||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 9.0 | 0.053 | E | -132.0 | 125.0 | 9.0 | 0.053 | 0.0 | ||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 7.0 | 0.041 | E | -159.2 | 135.8 | 7.0 | 0.041 | 0.0 | ||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 6.0 | 0.035 | E | -128.5 | 140.1 | 6.0 | 0.035 | 0.0 | ||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 7.0 | 0.041 | E | -135.4 | 137.2 | 7.0 | 0.041 | 0.0 | ||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 8.0 | 0.047 | E | -123.4 | 140.1 | 8.0 | 0.047 | 0.0 | ||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 5.0 | 0.029 | E | -153.9 | 121.9 | 5.0 | 0.029 | 0.0 | ||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 10.0 | 0.059 | E | -130.3 | 134.5 | 10.0 | 0.059 | 0.0 | ||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | LEU | A:317 | A:314 | 7.0 | 0.041 | E | -146.2 | 137.5 | 7.0 | 0.041 | 0.0 | ||||||
LEU | B:317 | B:314 | 7.0 | 0.041 | E | -147.3 | 142.1 | NA | NA | NA | |||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | LEU | A:314 | A:314 | 8.0 | 0.047 | E | -143.3 | 120.1 | 8.0 | 0.047 | 0.0 | ||||||
LEU | B:314 | B:314 | 3.0 | 0.018 | E | -169.3 | 138.1 | NA | NA | NA | |||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | LEU | A:314 | A:314 | 6.0 | 0.035 | E | -147.5 | 136.9 | 6.0 | 0.035 | 0.0 | ||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | LEU | A:314 | A:314 | 6.0 | 0.035 | E | -148.0 | 126.2 | 6.0 | 0.035 | 0.0 | ||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | LEU | A:333 | A:314 | 3.0 | 0.018 | -110.2 | 174.5 | 3.0 | 0.018 | 0.0 | |||||||
LEU | C:333 | C:314 | 2.0 | 0.012 | E | -109.9 | 163.4 | NA | NA | NA | |||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | LEU | A:333 | A:314 | 3.0 | 0.018 | E | -108.4 | 145.7 | 3.0 | 0.018 | 0.0 | ||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | LEU | A:333 | A:314 | 3.0 | 0.018 | E | -129.6 | 143.2 | 3.0 | 0.018 | 0.0 |
MES |
5.022 |
O |
C5 |
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4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | LEU | A:333 | A:314 | 4.0 | 0.024 | E | -118.4 | 144.5 | 4.0 | 0.024 | 0.0 |
HOH |
6.792 |
O |
O |
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4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | LEU | A:324 | A:314 | 3.0 | 0.018 | E | -125.9 | 141.3 | 3.0 | 0.018 | 0.0 | ||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | LEU | A:324 | A:314 | 10.0 | 0.059 | E | -126.5 | 141.2 | 10.0 | 0.059 | 0.0 | ||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | LEU | A:332 | A:314 | 4.0 | 0.024 | E | -149.2 | 149.9 | 4.0 | 0.024 | 0.0 | ||||||
LEU | C:332 | C:314 | 4.0 | 0.024 | E | -147.5 | 150.1 | NA | NA | NA | |||||||||||||
LEU | E:332 | E:314 | 4.0 | 0.024 | E | -148.5 | 150.3 | NA | NA | NA | |||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | LEU | B:314 | B:314 | 5.0 | 0.029 | E | -107.7 | 140.2 | 5.0 | 0.029 | 0.0 |
HOH |
2.847 |
O |
O |
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6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | LEU | B:314 | B:314 | 5.0 | 0.029 | E | -110.2 | 140.6 | 5.0 | 0.029 | 0.0 |
HOH |
4.359 |
O |
O |
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6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | LEU | A:318 | A:314 | 5.0 | 0.029 | E | -100.5 | 149.9 | 5.0 | 0.029 | 0.0 | ||||||
LEU | D:318 | D:314 | 5.0 | 0.029 | E | -96.5 | 156.2 | NA | NA | NA | |||||||||||||
LEU | G:318 | G:314 | 4.0 | 0.024 | E | -101.6 | 156.2 | NA | NA | NA | |||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | LEU | A:334 | A:314 | 4.0 | 0.024 | E | -118.5 | 146.8 | 4.0 | 0.024 | 0.0 |
HOH |
9.512 |
N |
O |
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LEU | D:334 | D:314 | 6.0 | 0.035 | E | -118.4 | 146.2 | NA | NA | NA | |||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | LEU | A:334 | A:314 | 4.0 | 0.024 | E | -134.3 | 150.0 | 4.0 | 0.024 | 0.0 |
HOH |
9.713 |
H |
O |
||
LEU | D:334 | D:314 | 4.0 | 0.024 | E | -126.8 | 154.0 | NA | NA | NA | |||||||||||||
LEU | G:334 | G:314 | 4.0 | 0.024 | E | -115.5 | 157.0 | NA | NA | NA | |||||||||||||
LEU | J:334 | J:314 | 4.0 | 0.024 | E | -123.9 | 152.2 | NA | NA | NA | |||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | LEU | A:334 | A:314 | 2.0 | 0.012 | E | -146.2 | 165.3 | 2.0 | 0.012 | 0.0 | ||||||
LEU | D:334 | D:314 | 3.0 | 0.018 | E | -137.9 | 164.4 | NA | NA | NA | |||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | LEU | A:342 | A:314 | 4.0 | 0.024 | E | -124.2 | 147.6 | 4.0 | 0.024 | 0.0 | ||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | LEU | A:342 | A:314 | 4.0 | 0.024 | E | -124.5 | 150.9 | 4.0 | 0.024 | 0.0 | ||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | LEU | A:342 | A:314 | 3.0 | 0.018 | E | -134.6 | 150.8 | 3.0 | 0.018 | 0.0 | ||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | LEU | A:342 | A:314 | 3.0 | 0.018 | E | -96.6 | 154.5 | 3.0 | 0.018 | 0.0 | ||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | LEU | A:342 | A:314 | 5.0 | 0.029 | E | -128.0 | 148.6 | 5.0 | 0.029 | 0.0 | ||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | LEU | A:342 | A:314 | 4.0 | 0.024 | E | -127.5 | 143.8 | 4.0 | 0.024 | 0.0 | ||||||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | LEU | A:342 | A:314 | 4.0 | 0.024 | E | -132.7 | 144.1 | 4.0 | 0.024 | 0.0 | ||||||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | LEU | A:342 | A:314 | 4.0 | 0.024 | E | -130.1 | 147.4 | 4.0 | 0.024 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | LEU | A:314 | A:314 | 4.0 | 0.024 | E | -127.9 | 146.7 |