Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61091489 | . | C | A | CCDS31576.1:NM_001923.4:c.883Gtc>Ttc_NP_001914.3:p.295V>F | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | VAL | A:295 | A:295 | 55.0 | 0.355 | -130.8 | 128.5 | 55.0 | 0.355 | 0.0 |
HOH |
4.522 |
CG1 |
O |
|||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | VAL | B:295 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
VAL | D:295 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | VAL | A:295 | A:295 | 50.0 | 0.323 | -101.3 | 111.2 | 50.0 | 0.323 | 0.0 | |||||||
VAL | B:295 | B:295 | 49.0 | 0.316 | -101.4 | 111.0 | NA | NA | NA | ||||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | VAL | A:295 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | VAL | A:295 | A:295 | 64.0 | 0.413 | -110.4 | 139.7 | 64.0 | 0.413 | 0.0 | |||||||
VAL | B:295 | B:295 | 60.0 | 0.387 | E | -111.7 | 140.8 | NA | NA | NA | |||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | VAL | A:295 | A:295 | 28.0 | 0.181 | E | -144.7 | 131.3 | 28.0 | 0.181 | 0.0 | ||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | VAL | B:295 | B:295 | 30.0 | 0.194 | -135.5 | 133.3 | 30.0 | 0.194 | 0.0 | |||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | VAL | A:295 | A:295 | 31.0 | NA | E | -84.2 | -173.6 | 31.0 | NA | NA | ||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | VAL | B:295 | Y:295 | 29.0 | NA | -131.1 | 111.0 | 29.0 | NA | NA | |||||||
VAL | E:295 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | VAL | A:295 | A:295 | 155.0 | 1.0 | 360.0 | -55.3 | 155.0 | 1.0 | 0.0 | |||||||
VAL | D:295 | D:295 | 156.0 | 1.0 | 360.0 | -55.2 | NA | NA | NA | ||||||||||||||
VAL | G:295 | G:295 | 153.0 | 0.987 | 360.0 | -54.9 | NA | NA | NA | ||||||||||||||
VAL | J:295 | J:295 | 157.0 | 1.0 | 360.0 | -54.4 | NA | NA | NA | ||||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | VAL | Z:295 | d:295 | 78.0 | 0.503 | 360.0 | 142.1 | 78.0 | 0.503 | 0.0 | |||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | VAL | A:297 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | VAL | A:297 | A:295 | 142.0 | 0.916 | 360.0 | 142.5 | 142.0 | 0.916 | 0.0 |
HOH |
8.458 |
CB |
O |
|||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | VAL | T:298 | d:295 | 107.0 | 0.69 | 360.0 | 140.3 | 107.0 | 0.69 | 0.0 | |||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | VAL | N:298 | d:295 | 88.0 | 0.568 | 360.0 | 145.8 | 88.0 | 0.568 | 0.0 | |||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | VAL | Z:298 | d:295 | 88.0 | 0.568 | 360.0 | 142.4 | 88.0 | 0.568 | 0.0 | |||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | VAL | Z:298 | d:295 | 88.0 | 0.568 | 360.0 | 142.4 | 88.0 | 0.568 | 0.0 | |||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | VAL | A:299 | A:295 | 106.0 | 0.684 | 360.0 | 120.2 | 106.0 | 0.684 | 0.0 | |||||||
VAL | C:299 | C:295 | 108.0 | 0.697 | 360.0 | 120.4 | NA | NA | NA | ||||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:299 | K:295 | 22.0 | 0.142 | E | -124.3 | 131.5 | 22.0 | 0.142 | 0.0 | ||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:318 | K:295 | 28.0 | 0.181 | E | -122.9 | 133.2 | 28.0 | 0.181 | 0.0 | ||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:318 | K:295 | 34.0 | 0.219 | E | -130.8 | 131.4 | 34.0 | 0.219 | 0.0 | ||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | K:318 | K:295 | 28.0 | 0.181 | E | -123.2 | 134.2 | 28.0 | 0.181 | 0.0 | ||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | VAL | L:318 | K:295 | 39.0 | 0.252 | E | -123.3 | 134.7 | 39.0 | 0.252 | 0.0 | ||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | VAL | C:314 | C:295 | 106.0 | 0.684 | 360.0 | 120.4 | 106.0 | 0.684 | 0.0 | |||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | VAL | A:314 | A:295 | 77.0 | 0.497 | -80.9 | 130.3 | 77.0 | 0.497 | 0.0 | |||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | VAL | A:314 | A:295 | 45.0 | NA | E | -90.6 | 126.3 | 45.0 | NA | NA | ||||||
VAL | E:314 | E:295 | 45.0 | NA | E | -90.6 | 126.3 | NA | NA | NA | |||||||||||||
VAL | I:314 | I:295 | 45.0 | NA | E | -90.6 | 126.3 | NA | NA | NA | |||||||||||||
VAL | M:314 | M:295 | 45.0 | NA | E | -90.6 | 126.3 | NA | NA | NA | |||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:313 | A:295 | 115.0 | 0.742 | 360.0 | 72.1 | 115.0 | 0.742 | 0.0 | |||||||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:313 | A:295 | 108.0 | 0.697 | 360.0 | 120.4 | 108.0 | 0.697 | 0.0 | |||||||
3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:313 | A:295 | 111.0 | 0.716 | 360.0 | 108.8 | 111.0 | 0.716 | 0.0 |
HOH |
4.917 |
O |
O |
|||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | VAL | A:313 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | VAL | A:313 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | VAL | A:313 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | VAL | A:313 | A:295 | 86.0 | 0.555 | -101.3 | 120.2 | 86.0 | 0.555 | 0.0 | |||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | VAL | A:294 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 44.0 | 0.284 | E | -114.7 | 148.6 | 44.0 | 0.284 | 0.0 | ||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 47.0 | 0.303 | E | -108.1 | 131.3 | 47.0 | 0.303 | 0.0 | ||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 61.0 | 0.394 | -59.1 | 132.8 | 61.0 | 0.394 | 0.0 | |||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 59.0 | 0.381 | B | -152.9 | 173.6 | 59.0 | 0.381 | 0.0 | ||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 50.0 | 0.323 | -63.1 | 130.6 | 50.0 | 0.323 | 0.0 | |||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 44.0 | 0.284 | E | -60.8 | 121.1 | 44.0 | 0.284 | 0.0 | ||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 42.0 | 0.271 | E | -129.6 | 114.9 | 42.0 | 0.271 | 0.0 | ||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 45.0 | 0.29 | E | -58.7 | 135.4 | 45.0 | 0.29 | 0.0 | ||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | VAL | A:298 | A:295 | 38.0 | 0.245 | -133.3 | 134.2 | 38.0 | 0.245 | 0.0 | |||||||
VAL | B:298 | B:295 | 36.0 | 0.232 | -119.4 | 176.6 | NA | NA | NA | ||||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | VAL | A:295 | A:295 | 55.0 | 0.355 | E | -146.0 | 128.9 | 55.0 | 0.355 | 0.0 | ||||||
VAL | B:295 | B:295 | 78.0 | 0.503 | E | -110.9 | 136.3 | NA | NA | NA | |||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | VAL | A:295 | A:295 | 52.0 | 0.335 | E | -86.2 | 102.2 | 52.0 | 0.335 | 0.0 | ||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | VAL | A:295 | A:295 | 68.0 | 0.439 | B | -101.4 | 131.4 | 68.0 | 0.439 | 0.0 | ||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:314 | A:295 | 114.0 | 0.735 | 360.0 | -174.3 | 114.0 | 0.735 | 0.0 | |||||||
VAL | C:314 | C:295 | 138.0 | 0.89 | 360.0 | 146.8 | NA | NA | NA | ||||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:314 | A:295 | 78.0 | 0.503 | 360.0 | -8.8 | 78.0 | 0.503 | 0.0 | |||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:314 | A:295 | 182.0 | 1.0 | 360.0 | 116.2 | 182.0 | 1.0 | 0.0 | |||||||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | VAL | A:314 | A:295 | 118.0 | 0.761 | 360.0 | 132.9 | 118.0 | 0.761 | 0.0 | |||||||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | VAL | A:305 | A:295 | 47.0 | NA | -131.3 | 118.8 | 47.0 | NA | NA | |||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | VAL | A:305 | A:295 | 70.0 | 0.452 | 130.6 | 131.2 | 70.0 | 0.452 | 0.0 | |||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | VAL | A:313 | A:295 | 66.0 | 0.426 | -48.4 | 124.6 | 66.0 | 0.426 | 0.0 | |||||||
VAL | C:313 | C:295 | 64.0 | 0.413 | -55.9 | 124.3 | NA | NA | NA | ||||||||||||||
VAL | E:313 | E:295 | 64.0 | 0.413 | -55.8 | 124.4 | NA | NA | NA | ||||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | VAL | B:295 | B:295 | 25.0 | 0.161 | E | -130.4 | 140.3 | 25.0 | 0.161 | 0.0 |
HOH |
4.987 |
O |
O |
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6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | VAL | B:295 | B:295 | 27.0 | 0.174 | E | -130.1 | 151.7 | 27.0 | 0.174 | 0.0 |
HOH |
6.733 |
C |
O |
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6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | VAL | A:299 | A:295 | 30.0 | 0.194 | E | -121.1 | 101.9 | 30.0 | 0.194 | 0.0 | ||||||
VAL | D:299 | D:295 | 32.0 | 0.206 | E | -120.5 | 101.4 | NA | NA | NA | |||||||||||||
VAL | G:299 | G:295 | 29.0 | 0.187 | E | -123.2 | 101.9 | NA | NA | NA | |||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | VAL | A:315 | A:295 | 159.0 | 1.0 | 360.0 | -52.1 | 159.0 | 1.0 | 0.0 | |||||||
VAL | D:315 | D:295 | 25.0 | 0.161 | E | -120.7 | 120.5 | NA | NA | NA | |||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | VAL | A:315 | A:295 | 24.0 | 0.155 | 62.7 | 121.3 | 24.0 | 0.155 | 0.0 | |||||||
VAL | D:315 | D:295 | 26.0 | 0.168 | 63.7 | 121.8 | NA | NA | NA | ||||||||||||||
VAL | G:315 | G:295 | 25.0 | 0.161 | 69.0 | 135.6 | NA | NA | NA | ||||||||||||||
VAL | J:315 | J:295 | 42.0 | 0.271 | 46.5 | 98.2 | NA | NA | NA | ||||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | VAL | A:315 | A:295 | 32.0 | 0.206 | -72.8 | 123.3 | 32.0 | 0.206 | 0.0 | |||||||
VAL | D:315 | D:295 | 29.0 | 0.187 | -76.0 | 93.8 | NA | NA | NA | ||||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | VAL | A:323 | A:295 | 153.0 | 0.987 | 360.0 | -50.4 | 153.0 | 0.987 | 0.0 | |||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | VAL | A:323 | A:295 | 159.0 | 1.0 | 360.0 | -41.7 | 159.0 | 1.0 | 0.0 | |||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | VAL | A:323 | A:295 | 148.0 | 0.955 | 360.0 | -37.7 | 148.0 | 0.955 | 0.0 | |||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | VAL | A:323 | A:295 | 129.0 | 0.832 | 360.0 | -51.8 | 129.0 | 0.832 | 0.0 | |||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | VAL | A:323 | A:295 | 145.0 | 0.935 | 360.0 | -39.9 | 145.0 | 0.935 | 0.0 | |||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | VAL | A:323 | A:295 | 16.0 | 0.103 | E | -120.5 | 127.2 | 16.0 | 0.103 | 0.0 | ||||||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | VAL | A:323 | A:295 | 17.0 | 0.11 | E | -119.7 | 128.5 | 17.0 | 0.11 | 0.0 | ||||||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | VAL | A:323 | A:295 | 17.0 | 0.11 | E | -107.8 | 128.3 | 17.0 | 0.11 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | VAL | A:295 | A:295 | 40.0 | 0.258 | E | -94.9 | 123.7 |