Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61091489 . C A CCDS31576.1:NM_001923.4:c.883Gtc>Ttc_NP_001914.3:p.295V>F Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 VAL A:295 A:295 55.0 0.355 -130.8 128.5 55.0 0.355 0.0 HOH
4.522
CG1
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 VAL B:295 NA:NA DO NA DO DO DO NA NA NA
VAL D:295 NA:NA DO NA DO DO DO NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 VAL A:295 A:295 50.0 0.323 -101.3 111.2 50.0 0.323 0.0
VAL B:295 B:295 49.0 0.316 -101.4 111.0 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 VAL A:295 NA:NA DO NA DO DO DO NA NA NA
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 VAL A:295 A:295 64.0 0.413 -110.4 139.7 64.0 0.413 0.0
VAL B:295 B:295 60.0 0.387 E -111.7 140.8 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 VAL A:295 A:295 28.0 0.181 E -144.7 131.3 28.0 0.181 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 VAL B:295 B:295 30.0 0.194 -135.5 133.3 30.0 0.194 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 VAL A:295 A:295 31.0 NA E -84.2 -173.6 31.0 NA NA
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 VAL B:295 Y:295 29.0 NA -131.1 111.0 29.0 NA NA
VAL E:295 NA:NA DO NA DO DO DO NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 VAL A:295 A:295 155.0 1.0 360.0 -55.3 155.0 1.0 0.0
VAL D:295 D:295 156.0 1.0 360.0 -55.2 NA NA NA
VAL G:295 G:295 153.0 0.987 360.0 -54.9 NA NA NA
VAL J:295 J:295 157.0 1.0 360.0 -54.4 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 VAL Z:295 d:295 78.0 0.503 360.0 142.1 78.0 0.503 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 VAL A:297 NA:NA DO NA DO DO DO NA NA NA
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 VAL A:297 A:295 142.0 0.916 360.0 142.5 142.0 0.916 0.0 HOH
8.458
CB
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 VAL T:298 d:295 107.0 0.69 360.0 140.3 107.0 0.69 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 VAL N:298 d:295 88.0 0.568 360.0 145.8 88.0 0.568 0.0
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 VAL Z:298 d:295 88.0 0.568 360.0 142.4 88.0 0.568 0.0
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 VAL Z:298 d:295 88.0 0.568 360.0 142.4 88.0 0.568 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 VAL A:299 A:295 106.0 0.684 360.0 120.2 106.0 0.684 0.0
VAL C:299 C:295 108.0 0.697 360.0 120.4 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 VAL K:299 K:295 22.0 0.142 E -124.3 131.5 22.0 0.142 0.0
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 VAL K:318 K:295 28.0 0.181 E -122.9 133.2 28.0 0.181 0.0
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 VAL K:318 K:295 34.0 0.219 E -130.8 131.4 34.0 0.219 0.0
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 VAL K:318 K:295 28.0 0.181 E -123.2 134.2 28.0 0.181 0.0
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 VAL L:318 K:295 39.0 0.252 E -123.3 134.7 39.0 0.252 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 VAL C:314 C:295 106.0 0.684 360.0 120.4 106.0 0.684 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 VAL A:314 A:295 77.0 0.497 -80.9 130.3 77.0 0.497 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 VAL A:314 A:295 45.0 NA E -90.6 126.3 45.0 NA NA
VAL E:314 E:295 45.0 NA E -90.6 126.3 NA NA NA
VAL I:314 I:295 45.0 NA E -90.6 126.3 NA NA NA
VAL M:314 M:295 45.0 NA E -90.6 126.3 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 VAL A:313 A:295 115.0 0.742 360.0 72.1 115.0 0.742 0.0
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 VAL A:313 A:295 108.0 0.697 360.0 120.4 108.0 0.697 0.0
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 VAL A:313 A:295 111.0 0.716 360.0 108.8 111.0 0.716 0.0 HOH
4.917
O
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 VAL A:313 NA:NA DO NA DO DO DO NA NA NA
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 VAL A:313 NA:NA DO NA DO DO DO NA NA NA
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 VAL A:313 NA:NA DO NA DO DO DO NA NA NA
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 VAL A:313 A:295 86.0 0.555 -101.3 120.2 86.0 0.555 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 VAL A:294 NA:NA DO NA DO DO DO NA NA NA
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 44.0 0.284 E -114.7 148.6 44.0 0.284 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 47.0 0.303 E -108.1 131.3 47.0 0.303 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 61.0 0.394 -59.1 132.8 61.0 0.394 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 59.0 0.381 B -152.9 173.6 59.0 0.381 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 50.0 0.323 -63.1 130.6 50.0 0.323 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 44.0 0.284 E -60.8 121.1 44.0 0.284 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 42.0 0.271 E -129.6 114.9 42.0 0.271 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 45.0 0.29 E -58.7 135.4 45.0 0.29 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 VAL A:298 A:295 38.0 0.245 -133.3 134.2 38.0 0.245 0.0
VAL B:298 B:295 36.0 0.232 -119.4 176.6 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 VAL A:295 A:295 55.0 0.355 E -146.0 128.9 55.0 0.355 0.0
VAL B:295 B:295 78.0 0.503 E -110.9 136.3 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 VAL A:295 A:295 52.0 0.335 E -86.2 102.2 52.0 0.335 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 VAL A:295 A:295 68.0 0.439 B -101.4 131.4 68.0 0.439 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:314 A:295 114.0 0.735 360.0 -174.3 114.0 0.735 0.0
VAL C:314 C:295 138.0 0.89 360.0 146.8 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:314 A:295 78.0 0.503 360.0 -8.8 78.0 0.503 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:314 A:295 182.0 1.0 360.0 116.2 182.0 1.0 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 VAL A:314 A:295 118.0 0.761 360.0 132.9 118.0 0.761 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 VAL A:305 A:295 47.0 NA -131.3 118.8 47.0 NA NA
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 VAL A:305 A:295 70.0 0.452 130.6 131.2 70.0 0.452 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 VAL A:313 A:295 66.0 0.426 -48.4 124.6 66.0 0.426 0.0
VAL C:313 C:295 64.0 0.413 -55.9 124.3 NA NA NA
VAL E:313 E:295 64.0 0.413 -55.8 124.4 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
2019-12-18 VAL B:295 B:295 25.0 0.161 E -130.4 140.3 25.0 0.161 0.0 HOH
4.987
O
O
6ue5 2 Q16531 100.0 0.0 X-RAY
2019-12-18 VAL B:295 B:295 27.0 0.174 E -130.1 151.7 27.0 0.174 0.0 HOH
6.733
C
O
6td3 1 Q16531 100.0 0.0 X-RAY
2020-06-17 VAL A:299 A:295 30.0 0.194 E -121.1 101.9 30.0 0.194 0.0
VAL D:299 D:295 32.0 0.206 E -120.5 101.4 NA NA NA
VAL G:299 G:295 29.0 0.187 E -123.2 101.9 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
2016-02-24 VAL A:315 A:295 159.0 1.0 360.0 -52.1 159.0 1.0 0.0
VAL D:315 D:295 25.0 0.161 E -120.7 120.5 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
2018-11-07 VAL A:315 A:295 24.0 0.155 62.7 121.3 24.0 0.155 0.0
VAL D:315 D:295 26.0 0.168 63.7 121.8 NA NA NA
VAL G:315 G:295 25.0 0.161 69.0 135.6 NA NA NA
VAL J:315 J:295 42.0 0.271 46.5 98.2 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
2018-11-07 VAL A:315 A:295 32.0 0.206 -72.8 123.3 32.0 0.206 0.0
VAL D:315 D:295 29.0 0.187 -76.0 93.8 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
2018-05-30 VAL A:323 A:295 153.0 0.987 360.0 -50.4 153.0 0.987 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
2018-06-06 VAL A:323 A:295 159.0 1.0 360.0 -41.7 159.0 1.0 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
2018-05-30 VAL A:323 A:295 148.0 0.955 360.0 -37.7 148.0 0.955 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
2018-05-30 VAL A:323 A:295 129.0 0.832 360.0 -51.8 129.0 0.832 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
2018-05-30 VAL A:323 A:295 145.0 0.935 360.0 -39.9 145.0 0.935 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
2019-11-13 VAL A:323 A:295 16.0 0.103 E -120.5 127.2 16.0 0.103 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
2019-11-13 VAL A:323 A:295 17.0 0.11 E -119.7 128.5 17.0 0.11 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
2019-11-13 VAL A:323 A:295 17.0 0.11 E -107.8 128.3 17.0 0.11 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 VAL A:295 A:295 40.0 0.258 E -94.9 123.7