Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61093091 | . | T | A | CCDS31576.1:NM_001923.4:c.754Atc>Ttc_NP_001914.3:p.252I>F | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ILE | A:252 | A:252 | 58.0 | NA | G | -29.6 | -48.5 | 58.0 | NA | NA |
HOH |
4.261 |
O |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ILE | B:252 | Y:252 | 81.0 | 0.463 | G | -66.4 | -14.5 | 81.0 | 0.463 | 0.0 | ||||||
| ILE | D:252 | B:252 | 76.0 | 0.434 | G | -66.5 | -14.4 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ILE | A:252 | A:252 | 58.0 | 0.331 | T | -61.9 | -69.6 | 58.0 | 0.331 | 0.0 | ||||||
| ILE | B:252 | B:252 | 56.0 | 0.32 | G | -56.9 | -57.8 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ILE | A:252 | A:252 | 63.0 | 0.36 | T | -72.0 | -30.8 | 63.0 | 0.36 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ILE | A:252 | A:252 | 84.0 | 0.48 | T | -66.8 | -8.6 | 84.0 | 0.48 | 0.0 | ||||||
| ILE | B:252 | B:252 | 85.0 | 0.486 | T | -65.9 | -8.1 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ILE | A:252 | A:252 | 56.0 | 0.32 | G | -58.9 | -38.0 | 56.0 | 0.32 | 0.0 | ||||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ILE | B:252 | B:252 | 76.0 | 0.434 | S | -77.2 | -39.1 | 76.0 | 0.434 | 0.0 | ||||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ILE | A:252 | A:252 | 65.0 | 0.371 | G | -76.2 | 0.7 | 65.0 | 0.371 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ILE | B:252 | Y:252 | 77.0 | 0.44 | G | -73.6 | -9.9 | 77.0 | 0.44 | 0.0 | ||||||
| ILE | E:252 | B:252 | 82.0 | 0.469 | T | -75.8 | -10.5 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ILE | A:252 | A:252 | 66.0 | 0.377 | G | -64.3 | -25.3 | 66.0 | 0.377 | 0.0 | ||||||
| ILE | D:252 | D:252 | 67.0 | 0.383 | G | -64.2 | -25.4 | NA | NA | NA | |||||||||||||
| ILE | G:252 | G:252 | 68.0 | 0.389 | G | -64.6 | -25.4 | NA | NA | NA | |||||||||||||
| ILE | J:252 | J:252 | 62.0 | 0.354 | G | -64.3 | -26.0 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ILE | Z:252 | d:252 | 86.0 | 0.491 | G | -73.5 | -25.2 | 86.0 | 0.491 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ILE | A:254 | A:252 | 71.0 | 0.406 | G | -69.8 | -27.1 | 71.0 | 0.406 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ILE | A:254 | A:252 | 60.0 | 0.343 | G | -58.2 | -36.4 | 60.0 | 0.343 | 0.0 |
HOH |
2.969 |
N |
O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ILE | T:255 | d:252 | 66.0 | 0.377 | G | -72.7 | -22.8 | 66.0 | 0.377 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ILE | N:255 | d:252 | 58.0 | 0.331 | G | -74.1 | -21.3 | 58.0 | 0.331 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ILE | Z:255 | d:252 | 57.0 | 0.326 | G | -74.4 | -19.5 | 57.0 | 0.326 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ILE | Z:255 | d:252 | 57.0 | 0.326 | G | -74.4 | -19.5 | 57.0 | 0.326 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ILE | A:256 | A:252 | 61.0 | 0.349 | H | -58.2 | -34.9 | 61.0 | 0.349 | 0.0 | ||||||
| ILE | C:256 | C:252 | 63.0 | 0.36 | H | -58.2 | -34.6 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ILE | K:256 | K:252 | 61.0 | 0.349 | G | -57.5 | -33.0 | 61.0 | 0.349 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ILE | K:275 | K:252 | 71.0 | 0.406 | G | -56.6 | -32.5 | 71.0 | 0.406 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ILE | K:275 | K:252 | 76.0 | 0.434 | G | -53.6 | -33.5 | 76.0 | 0.434 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ILE | K:275 | K:252 | 91.0 | 0.52 | G | -59.0 | -34.2 | 91.0 | 0.52 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ILE | L:275 | K:252 | 54.0 | 0.309 | G | -58.3 | -33.9 | 54.0 | 0.309 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ILE | C:271 | C:252 | 62.0 | 0.354 | H | -58.1 | -34.7 | 62.0 | 0.354 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ILE | A:271 | A:252 | 59.0 | 0.337 | T | -56.3 | -27.2 | 59.0 | 0.337 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ILE | A:271 | A:252 | 66.0 | NA | H | -74.8 | -26.8 | 66.0 | NA | NA | ||||||
| ILE | E:271 | E:252 | 69.0 | NA | H | -74.8 | -26.7 | NA | NA | NA | |||||||||||||
| ILE | I:271 | I:252 | 70.0 | NA | H | -74.8 | -26.8 | NA | NA | NA | |||||||||||||
| ILE | M:271 | M:252 | 66.0 | NA | H | -74.8 | -26.8 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ILE | A:270 | A:252 | 58.0 | 0.331 | H | -51.6 | -27.5 | 58.0 | 0.331 | 0.0 | ||||||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ILE | A:270 | A:252 | 62.0 | 0.354 | H | -58.3 | -34.6 | 62.0 | 0.354 | 0.0 |
HOH |
3.770 |
O |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ILE | A:270 | A:252 | 57.0 | 0.326 | G | -55.0 | -47.8 | 57.0 | 0.326 | 0.0 |
HOH |
3.233 |
CG1 |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ILE | A:270 | A:252 | 65.0 | 0.371 | G | -60.0 | -22.1 | 65.0 | 0.371 | 0.0 | ||||||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ILE | A:270 | A:252 | 66.0 | 0.377 | G | -61.2 | -21.8 | 66.0 | 0.377 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ILE | A:270 | A:252 | 66.0 | 0.377 | G | -56.3 | -21.9 | 66.0 | 0.377 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ILE | A:270 | A:252 | 71.0 | 0.406 | T | -88.0 | -3.9 | 71.0 | 0.406 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ILE | A:251 | A:252 | 76.0 | 0.434 | G | -67.8 | -12.2 | 76.0 | 0.434 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 83.0 | 0.474 | G | -50.6 | -19.6 | 83.0 | 0.474 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 66.0 | 0.377 | G | -54.6 | -45.2 | 66.0 | 0.377 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 67.0 | 0.383 | G | -68.0 | -42.6 | 67.0 | 0.383 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 53.0 | 0.303 | G | -43.9 | -33.6 | 53.0 | 0.303 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 58.0 | 0.331 | H | -59.4 | -27.8 | 58.0 | 0.331 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 53.0 | 0.303 | H | -52.6 | -38.2 | 53.0 | 0.303 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 57.0 | 0.326 | H | -43.2 | -46.3 | 57.0 | 0.326 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 57.0 | 0.326 | H | -60.5 | -31.4 | 57.0 | 0.326 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ILE | A:255 | A:252 | 57.0 | 0.326 | H | -53.3 | -48.9 | 57.0 | 0.326 | 0.0 | ||||||
| ILE | B:255 | B:252 | 61.0 | 0.349 | H | -55.2 | -49.1 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ILE | A:252 | A:252 | 61.0 | 0.349 | H | -56.9 | -28.7 | 61.0 | 0.349 | 0.0 | ||||||
| ILE | B:252 | B:252 | 73.0 | 0.417 | S | -120.9 | 69.2 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ILE | A:252 | A:252 | 74.0 | 0.423 | G | -45.9 | -26.0 | 74.0 | 0.423 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ILE | A:252 | A:252 | 58.0 | 0.331 | H | -62.5 | -32.2 | 58.0 | 0.331 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ILE | A:271 | A:252 | 61.0 | 0.349 | H | -69.2 | -36.3 | 61.0 | 0.349 | 0.0 | ||||||
| ILE | C:271 | C:252 | 57.0 | 0.326 | T | -73.1 | -39.3 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ILE | A:271 | A:252 | 58.0 | 0.331 | T | -70.7 | -30.0 | 58.0 | 0.331 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ILE | A:271 | A:252 | 60.0 | 0.343 | T | -69.9 | -23.7 | 60.0 | 0.343 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ILE | A:271 | A:252 | 58.0 | 0.331 | T | -68.6 | -33.3 | 58.0 | 0.331 | 0.0 | ||||||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ILE | A:262 | A:252 | 48.0 | 0.274 | H | -59.6 | -36.0 | 48.0 | 0.274 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ILE | A:262 | A:252 | 60.0 | 0.343 | T | -80.8 | -0.0 | 60.0 | 0.343 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ILE | A:270 | A:252 | 88.0 | 0.503 | T | -84.7 | 57.8 | 88.0 | 0.503 | 0.0 | ||||||
| ILE | C:270 | C:252 | 90.0 | 0.514 | T | -84.0 | 57.1 | NA | NA | NA | |||||||||||||
| ILE | E:270 | E:252 | 89.0 | 0.509 | T | -84.8 | 57.2 | NA | NA | NA | |||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ILE | B:252 | B:252 | 60.0 | 0.343 | T | -66.7 | -45.6 | 60.0 | 0.343 | 0.0 |
HOH |
3.595 |
O |
O |
||
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ILE | B:252 | B:252 | 59.0 | 0.337 | G | -65.8 | -36.2 | 59.0 | 0.337 | 0.0 |
HOH |
4.540 |
CD1 |
O |
||
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | ILE | A:256 | A:252 | 68.0 | 0.389 | H | -59.5 | -41.9 | 68.0 | 0.389 | 0.0 | ||||||
| ILE | D:256 | D:252 | 58.0 | 0.331 | H | -59.5 | -41.3 | NA | NA | NA | |||||||||||||
| ILE | G:256 | G:252 | 60.0 | 0.343 | G | -59.7 | -41.3 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | ILE | A:272 | A:252 | 69.0 | 0.394 | G | -64.0 | -31.7 | 69.0 | 0.394 | 0.0 | ||||||
| ILE | D:272 | D:252 | 66.0 | 0.377 | G | -66.5 | -23.7 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ILE | A:272 | A:252 | 69.0 | 0.394 | G | -61.3 | -20.7 | 69.0 | 0.394 | 0.0 | ||||||
| ILE | D:272 | D:252 | 70.0 | 0.4 | G | -61.4 | -20.6 | NA | NA | NA | |||||||||||||
| ILE | G:272 | G:252 | 70.0 | 0.4 | G | -61.5 | -20.5 | NA | NA | NA | |||||||||||||
| ILE | J:272 | J:252 | 70.0 | 0.4 | G | -61.1 | -20.7 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ILE | A:272 | A:252 | 67.0 | 0.383 | G | -61.9 | -24.6 | 67.0 | 0.383 | 0.0 | ||||||
| ILE | D:272 | D:252 | 68.0 | 0.389 | G | -61.8 | -23.9 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ILE | A:280 | A:252 | 61.0 | 0.349 | G | -65.3 | -21.8 | 61.0 | 0.349 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | ILE | A:280 | A:252 | 61.0 | 0.349 | G | -71.5 | -26.5 | 61.0 | 0.349 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ILE | A:280 | A:252 | 58.0 | 0.331 | G | -73.3 | -15.9 | 58.0 | 0.331 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ILE | A:280 | A:252 | 65.0 | 0.371 | S | -77.7 | -28.4 | 65.0 | 0.371 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ILE | A:280 | A:252 | 56.0 | 0.32 | G | -64.0 | -25.4 | 56.0 | 0.32 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ILE | A:280 | A:252 | 73.0 | 0.417 | G | -49.4 | -43.1 | 73.0 | 0.417 | 0.0 | ||||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ILE | A:280 | A:252 | 67.0 | 0.383 | G | -54.8 | -33.0 | 67.0 | 0.383 | 0.0 | ||||||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ILE | A:280 | A:252 | 71.0 | 0.406 | G | -60.9 | -22.6 | 71.0 | 0.406 | 0.0 | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ILE | A:252 | A:252 | 52.0 | 0.297 | T | -71.4 | -32.4 | |