Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61093123 . T A CCDS31576.1:NM_001923.4:c.722aAt>aTt_NP_001914.3:p.241N>I Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 ASN A:241 A:241 87.0 0.544 -140.2 26.2 87.0 0.544 0.0 HOH
6.534
OD1
O
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 ASN B:241 Y:241 54.0 0.338 E -153.2 130.7 54.0 0.338 0.0
ASN D:241 B:241 54.0 0.338 E -154.1 131.7 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 ASN A:241 A:241 48.0 0.3 E -163.6 92.5 48.0 0.3 0.0
ASN B:241 B:241 46.0 0.287 E -165.0 92.2 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 ASN A:241 A:241 53.0 0.331 -163.1 175.7 53.0 0.331 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 ASN A:241 A:241 52.0 0.325 E -154.1 99.9 52.0 0.325 0.0
ASN B:241 B:241 59.0 0.369 E -156.7 100.4 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 ASN A:241 A:241 63.0 0.394 S -143.8 25.0 63.0 0.394 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 ASN B:241 B:241 58.0 0.362 E -155.2 100.7 58.0 0.362 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 ASN A:241 A:241 50.0 0.312 E -164.2 107.4 50.0 0.312 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 ASN B:241 Y:241 55.0 0.344 B -150.0 110.7 55.0 0.344 0.0
ASN E:241 B:241 23.0 NA B -151.5 111.9 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 ASN A:241 A:241 59.0 0.369 -144.0 -5.8 59.0 0.369 0.0
ASN D:241 D:241 61.0 0.381 -145.0 -4.7 NA NA NA
ASN G:241 G:241 59.0 0.369 -130.2 -17.1 NA NA NA
ASN J:241 J:241 57.0 0.356 E -142.3 42.9 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 ASN Z:241 d:241 62.0 0.388 S -121.7 -0.7 62.0 0.388 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 ASN A:243 A:241 48.0 0.3 E -147.9 89.8 48.0 0.3 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 ASN A:243 A:241 44.0 0.275 S -149.0 -161.4 44.0 0.275 0.0 HOH
3.808
OD1
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 ASN T:244 d:241 63.0 0.394 S -125.8 6.8 63.0 0.394 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 ASN N:244 d:241 56.0 0.35 S -123.4 7.9 56.0 0.35 0.0
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 ASN Z:244 d:241 72.0 0.45 S -124.5 7.1 72.0 0.45 0.0
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 ASN Z:244 d:241 72.0 0.45 S -124.5 7.1 72.0 0.45 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 ASN A:245 A:241 51.0 0.319 E -160.2 86.2 51.0 0.319 0.0
ASN C:245 C:241 50.0 0.312 E -160.1 86.5 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 ASN K:245 K:241 32.0 0.2 E -159.7 101.9 32.0 0.2 0.0
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 ASN K:264 K:241 56.0 0.35 E -158.2 97.8 56.0 0.35 0.0
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 ASN K:264 K:241 49.0 0.306 E -158.5 98.9 49.0 0.306 0.0
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 ASN K:264 K:241 50.0 0.312 E -163.1 96.0 50.0 0.312 0.0
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 ASN L:264 K:241 52.0 0.325 E -163.5 96.5 52.0 0.325 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 ASN C:260 C:241 51.0 0.319 E -160.2 86.4 51.0 0.319 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 ASN A:260 A:241 43.0 0.269 -103.2 -7.5 43.0 0.269 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 ASN A:260 A:241 60.0 NA E -157.3 108.1 60.0 NA NA
ASN E:260 E:241 61.0 NA E -157.3 108.2 NA NA NA
ASN I:260 I:241 60.0 NA E -157.3 108.2 NA NA NA
ASN M:260 M:241 60.0 NA E -157.3 108.2 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ASN A:259 A:241 51.0 0.319 E -166.6 106.9 51.0 0.319 0.0 HOH
3.220
OD1
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ASN A:259 A:241 50.0 0.312 E -160.1 86.2 50.0 0.312 0.0 HOH
3.951
ND2
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 ASN A:259 A:241 54.0 0.338 E -163.7 81.0 54.0 0.338 0.0 HOH
3.738
N
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ASN A:259 A:241 53.0 0.331 E -154.7 59.8 53.0 0.331 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ASN A:259 A:241 49.0 0.306 E -152.2 63.7 49.0 0.306 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 ASN A:259 A:241 54.0 0.338 E -153.0 59.9 54.0 0.338 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 ASN A:259 A:241 28.0 0.175 -131.0 -12.4 28.0 0.175 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 ASN A:240 A:241 57.0 0.356 E -166.3 132.4 57.0 0.356 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 55.0 0.344 E -164.7 115.1 55.0 0.344 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 47.0 0.294 E -174.6 105.0 47.0 0.294 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 40.0 0.25 E -172.8 144.9 40.0 0.25 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 47.0 0.294 E -172.8 119.7 47.0 0.294 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 45.0 0.281 -151.1 165.1 45.0 0.281 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 50.0 0.312 E -162.1 159.2 50.0 0.312 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 53.0 0.331 E -176.0 131.1 53.0 0.331 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 46.0 0.287 E -175.0 157.0 46.0 0.287 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 ASN A:244 A:241 40.0 0.25 -156.9 176.4 40.0 0.25 0.0
ASN B:244 B:241 54.0 0.338 -132.6 13.1 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 ASN A:241 A:241 51.0 0.319 E -125.2 60.3 51.0 0.319 0.0
ASN B:241 B:241 31.0 0.194 S -79.4 -92.8 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 ASN A:241 A:241 55.0 0.344 E -163.6 109.6 55.0 0.344 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 ASN A:241 A:241 64.0 0.4 S -140.5 38.4 64.0 0.4 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASN A:260 A:241 56.0 0.35 -137.4 -14.0 56.0 0.35 0.0
ASN C:260 C:241 65.0 0.406 -150.1 18.8 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASN A:260 A:241 47.0 0.294 E -158.5 129.5 47.0 0.294 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASN A:260 A:241 60.0 0.375 E -148.3 83.4 60.0 0.375 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 ASN A:260 A:241 55.0 0.344 E -161.7 83.7 55.0 0.344 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 ASN A:251 A:241 46.0 0.287 -156.7 -175.8 46.0 0.287 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 ASN A:251 A:241 38.0 0.237 -119.5 -162.3 38.0 0.237 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 ASN A:259 A:241 57.0 0.356 -99.5 -25.6 57.0 0.356 0.0
ASN C:259 C:241 56.0 0.35 -99.6 -25.8 NA NA NA
ASN E:259 E:241 55.0 0.344 -98.8 -25.8 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
2019-12-18 ASN B:241 B:241 58.0 0.362 E -153.7 81.0 58.0 0.362 0.0 HOH
3.470
OD1
O
6ue5 2 Q16531 100.0 0.0 X-RAY
2019-12-18 ASN B:241 B:241 58.0 0.362 E -165.0 65.8 58.0 0.362 0.0 HOH
3.135
OD1
O
6td3 1 Q16531 100.0 0.0 X-RAY
2020-06-17 ASN A:245 A:241 50.0 0.312 E -160.6 56.7 50.0 0.312 0.0
ASN D:245 D:241 50.0 0.312 E -157.2 70.5 NA NA NA
ASN G:245 G:241 53.0 0.331 E -159.3 56.5 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
2016-02-24 ASN A:261 A:241 66.0 0.412 S -128.0 10.6 66.0 0.412 0.0 HOH
3.062
N
O
ASN D:261 D:241 57.0 0.356 E -167.2 90.5 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
2018-11-07 ASN A:261 A:241 63.0 0.394 E -160.0 99.3 63.0 0.394 0.0
ASN D:261 D:241 61.0 0.381 E -159.9 99.0 NA NA NA
ASN G:261 G:241 60.0 0.375 E -160.0 99.1 NA NA NA
ASN J:261 J:241 65.0 0.406 E -159.9 98.7 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
2018-11-07 ASN A:261 A:241 38.0 0.237 E -167.1 74.1 38.0 0.237 0.0
ASN D:261 D:241 35.0 0.219 E -167.1 74.0 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
2018-05-30 ASN A:269 A:241 64.0 0.4 E -146.0 80.5 64.0 0.4 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
2018-06-06 ASN A:269 A:241 60.0 0.375 E -158.3 89.3 60.0 0.375 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
2018-05-30 ASN A:269 A:241 60.0 0.375 E -160.7 89.1 60.0 0.375 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
2018-05-30 ASN A:269 A:241 70.0 0.438 S -151.1 -14.7 70.0 0.438 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
2018-05-30 ASN A:269 A:241 58.0 0.362 E -165.7 85.9 58.0 0.362 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
2019-11-13 ASN A:269 A:241 58.0 0.362 E -165.1 92.4 58.0 0.362 0.0 HOH
7.120
ND2
O
6q0v 1 Q16531 100.0 0.0 X-RAY
2019-11-13 ASN A:269 A:241 59.0 0.369 E -165.2 86.5 59.0 0.369 0.0 HOH
7.421
ND2
O
6q0w 1 Q16531 100.0 0.0 X-RAY
2019-11-13 ASN A:269 A:241 56.0 0.35 E -161.8 89.6 56.0 0.35 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 ASN A:241 A:241 45.0 0.281 -121.9 -5.7