Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61093123 | . | T | A | CCDS31576.1:NM_001923.4:c.722aAt>aTt_NP_001914.3:p.241N>I | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ASN | A:241 | A:241 | 87.0 | 0.544 | -140.2 | 26.2 | 87.0 | 0.544 | 0.0 |
HOH |
6.534 |
OD1 |
O |
|||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ASN | B:241 | Y:241 | 54.0 | 0.338 | E | -153.2 | 130.7 | 54.0 | 0.338 | 0.0 | ||||||
ASN | D:241 | B:241 | 54.0 | 0.338 | E | -154.1 | 131.7 | NA | NA | NA | |||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ASN | A:241 | A:241 | 48.0 | 0.3 | E | -163.6 | 92.5 | 48.0 | 0.3 | 0.0 | ||||||
ASN | B:241 | B:241 | 46.0 | 0.287 | E | -165.0 | 92.2 | NA | NA | NA | |||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ASN | A:241 | A:241 | 53.0 | 0.331 | -163.1 | 175.7 | 53.0 | 0.331 | 0.0 | |||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ASN | A:241 | A:241 | 52.0 | 0.325 | E | -154.1 | 99.9 | 52.0 | 0.325 | 0.0 | ||||||
ASN | B:241 | B:241 | 59.0 | 0.369 | E | -156.7 | 100.4 | NA | NA | NA | |||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ASN | A:241 | A:241 | 63.0 | 0.394 | S | -143.8 | 25.0 | 63.0 | 0.394 | 0.0 | ||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ASN | B:241 | B:241 | 58.0 | 0.362 | E | -155.2 | 100.7 | 58.0 | 0.362 | 0.0 | ||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ASN | A:241 | A:241 | 50.0 | 0.312 | E | -164.2 | 107.4 | 50.0 | 0.312 | 0.0 | ||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ASN | B:241 | Y:241 | 55.0 | 0.344 | B | -150.0 | 110.7 | 55.0 | 0.344 | 0.0 | ||||||
ASN | E:241 | B:241 | 23.0 | NA | B | -151.5 | 111.9 | NA | NA | NA | |||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ASN | A:241 | A:241 | 59.0 | 0.369 | -144.0 | -5.8 | 59.0 | 0.369 | 0.0 | |||||||
ASN | D:241 | D:241 | 61.0 | 0.381 | -145.0 | -4.7 | NA | NA | NA | ||||||||||||||
ASN | G:241 | G:241 | 59.0 | 0.369 | -130.2 | -17.1 | NA | NA | NA | ||||||||||||||
ASN | J:241 | J:241 | 57.0 | 0.356 | E | -142.3 | 42.9 | NA | NA | NA | |||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | Z:241 | d:241 | 62.0 | 0.388 | S | -121.7 | -0.7 | 62.0 | 0.388 | 0.0 | ||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ASN | A:243 | A:241 | 48.0 | 0.3 | E | -147.9 | 89.8 | 48.0 | 0.3 | 0.0 | ||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ASN | A:243 | A:241 | 44.0 | 0.275 | S | -149.0 | -161.4 | 44.0 | 0.275 | 0.0 |
HOH |
3.808 |
OD1 |
O |
||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | T:244 | d:241 | 63.0 | 0.394 | S | -125.8 | 6.8 | 63.0 | 0.394 | 0.0 | ||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | N:244 | d:241 | 56.0 | 0.35 | S | -123.4 | 7.9 | 56.0 | 0.35 | 0.0 | ||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | Z:244 | d:241 | 72.0 | 0.45 | S | -124.5 | 7.1 | 72.0 | 0.45 | 0.0 | ||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ASN | Z:244 | d:241 | 72.0 | 0.45 | S | -124.5 | 7.1 | 72.0 | 0.45 | 0.0 | ||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASN | A:245 | A:241 | 51.0 | 0.319 | E | -160.2 | 86.2 | 51.0 | 0.319 | 0.0 | ||||||
ASN | C:245 | C:241 | 50.0 | 0.312 | E | -160.1 | 86.5 | NA | NA | NA | |||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:245 | K:241 | 32.0 | 0.2 | E | -159.7 | 101.9 | 32.0 | 0.2 | 0.0 | ||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:264 | K:241 | 56.0 | 0.35 | E | -158.2 | 97.8 | 56.0 | 0.35 | 0.0 | ||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:264 | K:241 | 49.0 | 0.306 | E | -158.5 | 98.9 | 49.0 | 0.306 | 0.0 | ||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | K:264 | K:241 | 50.0 | 0.312 | E | -163.1 | 96.0 | 50.0 | 0.312 | 0.0 | ||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ASN | L:264 | K:241 | 52.0 | 0.325 | E | -163.5 | 96.5 | 52.0 | 0.325 | 0.0 | ||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ASN | C:260 | C:241 | 51.0 | 0.319 | E | -160.2 | 86.4 | 51.0 | 0.319 | 0.0 | ||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ASN | A:260 | A:241 | 43.0 | 0.269 | -103.2 | -7.5 | 43.0 | 0.269 | 0.0 | |||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ASN | A:260 | A:241 | 60.0 | NA | E | -157.3 | 108.1 | 60.0 | NA | NA | ||||||
ASN | E:260 | E:241 | 61.0 | NA | E | -157.3 | 108.2 | NA | NA | NA | |||||||||||||
ASN | I:260 | I:241 | 60.0 | NA | E | -157.3 | 108.2 | NA | NA | NA | |||||||||||||
ASN | M:260 | M:241 | 60.0 | NA | E | -157.3 | 108.2 | NA | NA | NA | |||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:259 | A:241 | 51.0 | 0.319 | E | -166.6 | 106.9 | 51.0 | 0.319 | 0.0 |
HOH |
3.220 |
OD1 |
O |
||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:259 | A:241 | 50.0 | 0.312 | E | -160.1 | 86.2 | 50.0 | 0.312 | 0.0 |
HOH |
3.951 |
ND2 |
O |
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3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:259 | A:241 | 54.0 | 0.338 | E | -163.7 | 81.0 | 54.0 | 0.338 | 0.0 |
HOH |
3.738 |
N |
O |
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4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:259 | A:241 | 53.0 | 0.331 | E | -154.7 | 59.8 | 53.0 | 0.331 | 0.0 | ||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:259 | A:241 | 49.0 | 0.306 | E | -152.2 | 63.7 | 49.0 | 0.306 | 0.0 | ||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ASN | A:259 | A:241 | 54.0 | 0.338 | E | -153.0 | 59.9 | 54.0 | 0.338 | 0.0 | ||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ASN | A:259 | A:241 | 28.0 | 0.175 | -131.0 | -12.4 | 28.0 | 0.175 | 0.0 | |||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ASN | A:240 | A:241 | 57.0 | 0.356 | E | -166.3 | 132.4 | 57.0 | 0.356 | 0.0 | ||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 55.0 | 0.344 | E | -164.7 | 115.1 | 55.0 | 0.344 | 0.0 | ||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 47.0 | 0.294 | E | -174.6 | 105.0 | 47.0 | 0.294 | 0.0 | ||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 40.0 | 0.25 | E | -172.8 | 144.9 | 40.0 | 0.25 | 0.0 | ||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 47.0 | 0.294 | E | -172.8 | 119.7 | 47.0 | 0.294 | 0.0 | ||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 45.0 | 0.281 | -151.1 | 165.1 | 45.0 | 0.281 | 0.0 | |||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 50.0 | 0.312 | E | -162.1 | 159.2 | 50.0 | 0.312 | 0.0 | ||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 53.0 | 0.331 | E | -176.0 | 131.1 | 53.0 | 0.331 | 0.0 | ||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 46.0 | 0.287 | E | -175.0 | 157.0 | 46.0 | 0.287 | 0.0 | ||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ASN | A:244 | A:241 | 40.0 | 0.25 | -156.9 | 176.4 | 40.0 | 0.25 | 0.0 | |||||||
ASN | B:244 | B:241 | 54.0 | 0.338 | -132.6 | 13.1 | NA | NA | NA | ||||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:241 | A:241 | 51.0 | 0.319 | E | -125.2 | 60.3 | 51.0 | 0.319 | 0.0 | ||||||
ASN | B:241 | B:241 | 31.0 | 0.194 | S | -79.4 | -92.8 | NA | NA | NA | |||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ASN | A:241 | A:241 | 55.0 | 0.344 | E | -163.6 | 109.6 | 55.0 | 0.344 | 0.0 | ||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ASN | A:241 | A:241 | 64.0 | 0.4 | S | -140.5 | 38.4 | 64.0 | 0.4 | 0.0 | ||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:260 | A:241 | 56.0 | 0.35 | -137.4 | -14.0 | 56.0 | 0.35 | 0.0 | |||||||
ASN | C:260 | C:241 | 65.0 | 0.406 | -150.1 | 18.8 | NA | NA | NA | ||||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:260 | A:241 | 47.0 | 0.294 | E | -158.5 | 129.5 | 47.0 | 0.294 | 0.0 | ||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:260 | A:241 | 60.0 | 0.375 | E | -148.3 | 83.4 | 60.0 | 0.375 | 0.0 | ||||||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ASN | A:260 | A:241 | 55.0 | 0.344 | E | -161.7 | 83.7 | 55.0 | 0.344 | 0.0 | ||||||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ASN | A:251 | A:241 | 46.0 | 0.287 | -156.7 | -175.8 | 46.0 | 0.287 | 0.0 | |||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ASN | A:251 | A:241 | 38.0 | 0.237 | -119.5 | -162.3 | 38.0 | 0.237 | 0.0 | |||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ASN | A:259 | A:241 | 57.0 | 0.356 | -99.5 | -25.6 | 57.0 | 0.356 | 0.0 | |||||||
ASN | C:259 | C:241 | 56.0 | 0.35 | -99.6 | -25.8 | NA | NA | NA | ||||||||||||||
ASN | E:259 | E:241 | 55.0 | 0.344 | -98.8 | -25.8 | NA | NA | NA | ||||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ASN | B:241 | B:241 | 58.0 | 0.362 | E | -153.7 | 81.0 | 58.0 | 0.362 | 0.0 |
HOH |
3.470 |
OD1 |
O |
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6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ASN | B:241 | B:241 | 58.0 | 0.362 | E | -165.0 | 65.8 | 58.0 | 0.362 | 0.0 |
HOH |
3.135 |
OD1 |
O |
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6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | ASN | A:245 | A:241 | 50.0 | 0.312 | E | -160.6 | 56.7 | 50.0 | 0.312 | 0.0 | ||||||
ASN | D:245 | D:241 | 50.0 | 0.312 | E | -157.2 | 70.5 | NA | NA | NA | |||||||||||||
ASN | G:245 | G:241 | 53.0 | 0.331 | E | -159.3 | 56.5 | NA | NA | NA | |||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | ASN | A:261 | A:241 | 66.0 | 0.412 | S | -128.0 | 10.6 | 66.0 | 0.412 | 0.0 |
HOH |
3.062 |
N |
O |
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ASN | D:261 | D:241 | 57.0 | 0.356 | E | -167.2 | 90.5 | NA | NA | NA | |||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ASN | A:261 | A:241 | 63.0 | 0.394 | E | -160.0 | 99.3 | 63.0 | 0.394 | 0.0 | ||||||
ASN | D:261 | D:241 | 61.0 | 0.381 | E | -159.9 | 99.0 | NA | NA | NA | |||||||||||||
ASN | G:261 | G:241 | 60.0 | 0.375 | E | -160.0 | 99.1 | NA | NA | NA | |||||||||||||
ASN | J:261 | J:241 | 65.0 | 0.406 | E | -159.9 | 98.7 | NA | NA | NA | |||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ASN | A:261 | A:241 | 38.0 | 0.237 | E | -167.1 | 74.1 | 38.0 | 0.237 | 0.0 | ||||||
ASN | D:261 | D:241 | 35.0 | 0.219 | E | -167.1 | 74.0 | NA | NA | NA | |||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:269 | A:241 | 64.0 | 0.4 | E | -146.0 | 80.5 | 64.0 | 0.4 | 0.0 | ||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | ASN | A:269 | A:241 | 60.0 | 0.375 | E | -158.3 | 89.3 | 60.0 | 0.375 | 0.0 | ||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:269 | A:241 | 60.0 | 0.375 | E | -160.7 | 89.1 | 60.0 | 0.375 | 0.0 | ||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:269 | A:241 | 70.0 | 0.438 | S | -151.1 | -14.7 | 70.0 | 0.438 | 0.0 | ||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ASN | A:269 | A:241 | 58.0 | 0.362 | E | -165.7 | 85.9 | 58.0 | 0.362 | 0.0 | ||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ASN | A:269 | A:241 | 58.0 | 0.362 | E | -165.1 | 92.4 | 58.0 | 0.362 | 0.0 |
HOH |
7.120 |
ND2 |
O |
||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ASN | A:269 | A:241 | 59.0 | 0.369 | E | -165.2 | 86.5 | 59.0 | 0.369 | 0.0 |
HOH |
7.421 |
ND2 |
O |
||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ASN | A:269 | A:241 | 56.0 | 0.35 | E | -161.8 | 89.6 | 56.0 | 0.35 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ASN | A:241 | A:241 | 45.0 | 0.281 | -121.9 | -5.7 |