Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61097452 | . | G | A | CCDS31576.1:NM_001923.4:c.305aCg>aTg_NP_001914.3:p.102T>M | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | THR | A:102 | A:102 | 24.0 | 0.171 | E | -91.5 | 108.4 | 24.0 | 0.171 | 0.0 |
HOH |
2.428 |
OG1 |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | THR | B:102 | Y:102 | 16.0 | 0.114 | E | -104.9 | 104.8 | 16.0 | 0.114 | 0.0 | ||||||
| THR | D:102 | B:102 | 15.0 | 0.107 | E | -103.8 | 104.2 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | THR | A:102 | A:102 | 27.0 | 0.193 | E | -91.1 | 106.4 | 27.0 | 0.193 | 0.0 | ||||||
| THR | B:102 | B:102 | 27.0 | 0.193 | E | -91.1 | 106.3 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | THR | A:102 | A:102 | 17.0 | 0.121 | E | -108.2 | 101.9 | 17.0 | 0.121 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | THR | A:102 | A:102 | 26.0 | 0.186 | E | -107.8 | 87.9 | 26.0 | 0.186 | 0.0 | ||||||
| THR | B:102 | B:102 | 24.0 | 0.171 | E | -109.0 | 91.7 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | THR | A:102 | A:102 | 19.0 | 0.136 | E | -89.5 | 96.9 | 1.0 | 0.007 | 0.129 |
D:Q9BW61:0.129 |
|||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | THR | B:102 | B:102 | 25.0 | 0.179 | E | -74.9 | 138.3 | 3.0 | 0.021 | 0.158 |
D:Q9BW61:0.157 |
|||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | THR | A:102 | A:102 | 19.0 | 0.136 | E | -110.7 | 118.6 | 19.0 | 0.136 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | THR | B:102 | Y:102 | 27.0 | 0.193 | E | -92.4 | 130.1 | 27.0 | 0.193 | 0.0 | ||||||
| THR | E:102 | B:102 | 19.0 | 0.136 | E | -94.3 | 129.9 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | THR | A:102 | A:102 | 21.0 | 0.15 | E | -108.3 | 112.2 | 21.0 | 0.15 | 0.0 | ||||||
| THR | D:102 | D:102 | 19.0 | 0.136 | E | -108.2 | 112.2 | NA | NA | NA | |||||||||||||
| THR | G:102 | G:102 | 19.0 | 0.136 | E | -108.7 | 112.3 | NA | NA | NA | |||||||||||||
| THR | J:102 | J:102 | 20.0 | 0.143 | E | -108.5 | 112.0 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | THR | Z:102 | d:102 | 18.0 | 0.129 | E | -89.8 | 98.5 | 18.0 | 0.129 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | THR | A:104 | A:102 | 16.0 | 0.114 | E | -107.8 | 117.8 | 16.0 | 0.114 | 0.0 | ||||||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | THR | A:104 | A:102 | 19.0 | 0.136 | E | -84.8 | 110.2 | 19.0 | 0.136 | 0.0 |
GOL HOH |
8.155 6.515 |
OG1 O |
O1 O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | THR | T:105 | d:102 | 17.0 | 0.121 | E | -89.6 | 98.9 | 17.0 | 0.121 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | THR | N:105 | d:102 | 25.0 | 0.179 | E | -88.8 | 101.6 | 25.0 | 0.179 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | THR | Z:105 | d:102 | 19.0 | 0.136 | E | -89.5 | 103.2 | 19.0 | 0.136 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | THR | Z:105 | d:102 | 19.0 | 0.136 | E | -89.7 | 103.2 | 19.0 | 0.136 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | THR | A:106 | A:102 | 21.0 | 0.15 | E | -94.3 | 109.5 | 21.0 | 0.15 | 0.0 | ||||||
| THR | C:106 | C:102 | 41.0 | 0.293 | E | -94.0 | 109.6 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | THR | K:106 | K:102 | 23.0 | 0.164 | E | -90.6 | 106.9 | 23.0 | 0.164 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | THR | K:125 | K:102 | 39.0 | 0.279 | E | -88.2 | 106.2 | 39.0 | 0.279 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | THR | K:125 | K:102 | 28.0 | 0.2 | E | -88.0 | 106.4 | 28.0 | 0.2 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | THR | K:125 | K:102 | 17.0 | 0.121 | E | -95.1 | 110.8 | 17.0 | 0.121 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | THR | L:125 | K:102 | 28.0 | 0.2 | E | -94.8 | 111.4 | 28.0 | 0.2 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | THR | C:121 | C:102 | 25.0 | 0.179 | E | -94.3 | 109.7 | 25.0 | 0.179 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | THR | A:121 | A:102 | 22.0 | 0.157 | E | -90.5 | 108.9 | 22.0 | 0.157 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | THR | A:121 | A:102 | 52.0 | NA | E | -83.8 | 128.7 | 52.0 | NA | NA | ||||||
| THR | E:121 | E:102 | 53.0 | NA | E | -83.8 | 128.6 | NA | NA | NA | |||||||||||||
| THR | I:121 | I:102 | 54.0 | NA | E | -83.8 | 128.7 | NA | NA | NA | |||||||||||||
| THR | M:121 | M:102 | 51.0 | NA | E | -83.8 | 128.7 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | THR | A:120 | A:102 | 21.0 | 0.15 | E | -99.0 | 107.6 | 21.0 | 0.15 | 0.0 |
HOH |
2.562 |
OG1 |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | THR | A:120 | A:102 | 21.0 | 0.15 | E | -94.1 | 109.7 | 21.0 | 0.15 | 0.0 |
HOH |
7.655 |
OG1 |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | THR | A:120 | A:102 | 21.0 | 0.15 | E | -87.7 | 110.6 | 21.0 | 0.15 | 0.0 |
HOH |
2.899 |
OG1 |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | THR | A:120 | A:102 | 22.0 | 0.157 | E | -77.6 | 135.6 | 22.0 | 0.157 | 0.0 |
HOH |
7.886 |
OG1 |
O |
||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | THR | A:120 | A:102 | 20.0 | 0.143 | E | -77.8 | 114.7 | 20.0 | 0.143 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | THR | A:120 | A:102 | 22.0 | 0.157 | E | -75.6 | 137.3 | 22.0 | 0.157 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | THR | A:120 | A:102 | 33.0 | 0.236 | E | -76.6 | 124.0 | 33.0 | 0.236 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | THR | A:101 | A:102 | 17.0 | 0.121 | E | -98.4 | 106.6 | 17.0 | 0.121 | 0.0 |
HOH |
8.850 |
OG1 |
O |
||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 25.0 | 0.179 | E | -89.3 | 91.6 | 25.0 | 0.179 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 29.0 | 0.207 | E | -92.9 | 97.3 | 29.0 | 0.207 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 12.0 | 0.086 | E | -88.5 | 105.9 | 12.0 | 0.086 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 20.0 | 0.143 | E | -93.2 | 112.4 | 20.0 | 0.143 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 20.0 | 0.143 | E | -101.2 | 106.8 | 20.0 | 0.143 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 14.0 | 0.1 | E | -84.0 | 102.2 | 14.0 | 0.1 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 20.0 | 0.143 | E | -95.3 | 110.5 | 20.0 | 0.143 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 21.0 | 0.15 | E | -93.2 | 100.3 | 21.0 | 0.15 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | THR | A:105 | A:102 | 34.0 | 0.243 | E | -117.0 | 98.4 | 34.0 | 0.243 | 0.0 | ||||||
| THR | B:105 | B:102 | 21.0 | 0.15 | E | -109.7 | 98.2 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | THR | A:102 | A:102 | 28.0 | 0.2 | E | -106.4 | 123.0 | 28.0 | 0.2 | 0.0 | ||||||
| THR | B:102 | B:102 | 22.0 | 0.157 | E | -100.7 | 110.4 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | THR | A:102 | A:102 | 14.0 | 0.1 | E | -108.8 | 88.3 | 14.0 | 0.1 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | THR | A:102 | A:102 | 23.0 | 0.164 | E | -82.4 | 109.5 | 23.0 | 0.164 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | THR | A:121 | A:102 | 40.0 | 0.286 | E | -87.4 | 124.7 | 40.0 | 0.286 | 0.0 | ||||||
| THR | C:121 | C:102 | 11.0 | 0.079 | E | -74.9 | 114.1 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | THR | A:121 | A:102 | 11.0 | 0.079 | E | -84.3 | 102.2 | 11.0 | 0.079 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | THR | A:121 | A:102 | 27.0 | 0.193 | E | -100.2 | 106.9 | 27.0 | 0.193 | 0.0 |
HOH |
7.510 |
OG1 |
O |
||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | THR | A:121 | A:102 | 18.0 | 0.129 | E | -82.7 | 109.4 | 18.0 | 0.129 | 0.0 |
HOH |
8.817 |
C |
O |
||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | THR | A:112 | A:102 | 23.0 | 0.164 | E | -93.9 | 110.1 | 23.0 | 0.164 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | THR | A:112 | A:102 | 20.0 | 0.143 | E | -98.9 | 117.6 | 20.0 | 0.143 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | THR | A:120 | A:102 | 32.0 | 0.229 | E | -82.3 | 98.5 | 32.0 | 0.229 | 0.0 | ||||||
| THR | C:120 | C:102 | 36.0 | 0.257 | E | -83.0 | 99.1 | NA | NA | NA | |||||||||||||
| THR | E:120 | E:102 | 31.0 | 0.221 | E | -82.6 | 99.0 | NA | NA | NA | |||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | THR | B:102 | B:102 | 29.0 | 0.207 | E | -91.5 | 97.4 | 9.0 | 0.064 | 0.143 |
D:Q9BW61:0.143 |
HOH |
2.682 |
OG1 |
O |
|
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | THR | B:102 | B:102 | 25.0 | 0.179 | E | -92.3 | 101.9 | 8.0 | 0.057 | 0.122 |
D:Q9BW61:0.121 |
HOH |
3.050 |
N |
O |
|
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | THR | A:106 | A:102 | 22.0 | 0.157 | E | -100.7 | 90.7 | 22.0 | 0.157 | 0.0 | ||||||
| THR | D:106 | D:102 | 24.0 | 0.171 | E | -98.5 | 90.9 | NA | NA | NA | |||||||||||||
| THR | G:106 | G:102 | 23.0 | 0.164 | E | -104.6 | 97.8 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | THR | A:122 | A:102 | 23.0 | 0.164 | E | -96.3 | 115.4 | 23.0 | 0.164 | 0.0 |
HOH |
6.156 |
CG2 |
O |
||
| THR | D:122 | D:102 | 25.0 | 0.179 | E | -96.1 | 112.2 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | THR | A:122 | A:102 | 21.0 | 0.15 | E | -87.3 | 98.7 | 21.0 | 0.15 | 0.0 |
HOH |
8.851 |
HG1 |
O |
||
| THR | D:122 | D:102 | 18.0 | 0.129 | E | -87.5 | 98.8 | NA | NA | NA | |||||||||||||
| THR | G:122 | G:102 | 19.0 | 0.136 | E | -87.3 | 98.7 | NA | NA | NA | |||||||||||||
| THR | J:122 | J:102 | 18.0 | 0.129 | E | -87.4 | 98.6 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | THR | A:122 | A:102 | 13.0 | 0.093 | E | -106.2 | 113.0 | 13.0 | 0.093 | 0.0 | ||||||
| THR | D:122 | D:102 | 25.0 | 0.179 | E | -106.1 | 113.0 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | THR | A:130 | A:102 | 26.0 | 0.186 | E | -101.2 | 106.4 | 26.0 | 0.186 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | THR | A:130 | A:102 | 26.0 | 0.186 | E | -93.9 | 114.3 | 26.0 | 0.186 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | THR | A:130 | A:102 | 30.0 | 0.214 | E | -111.6 | 109.3 | 30.0 | 0.214 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | THR | A:130 | A:102 | 21.0 | 0.15 | E | -102.7 | 118.7 | 21.0 | 0.15 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | THR | A:130 | A:102 | 26.0 | 0.186 | E | -100.5 | 107.5 | 26.0 | 0.186 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | THR | A:130 | A:102 | 28.0 | 0.2 | E | -91.6 | 103.1 | 8.0 | 0.057 | 0.143 |
E:Q9BW61:0.143 |
|||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | THR | A:130 | A:102 | 28.0 | 0.2 | E | -91.2 | 102.3 | 8.0 | 0.057 | 0.143 |
E:Q9BW61:0.143 |
HOH |
8.005 |
OG1 |
O |
|
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | THR | A:130 | A:102 | 30.0 | 0.214 | E | -90.8 | 109.1 | 10.0 | 0.071 | 0.143 |
E:Q9BW61:0.143 |
|||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | THR | A:102 | A:102 | 19.0 | 0.136 | E | -78.9 | 101.2 | |