Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61099023 | . | T | A | CCDS31576.1:NM_001923.4:c.202Agg>Tgg_NP_001914.3:p.68R>W | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | ARG | A:68 | A:68 | 124.0 | 0.551 | -116.2 | 102.8 | 124.0 | 0.551 | 0.0 |
HOH |
6.856 |
NH1 |
O |
|||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | ARG | B:68 | Y:68 | 99.0 | 0.44 | -115.4 | 102.4 | 99.0 | 0.44 | 0.0 | |||||||
ARG | D:68 | B:68 | 52.0 | NA | -113.9 | 103.0 | NA | NA | NA | ||||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | ARG | A:68 | A:68 | 89.0 | 0.396 | -109.7 | 96.3 | 89.0 | 0.396 | 0.0 | |||||||
ARG | B:68 | B:68 | 91.0 | 0.404 | -114.0 | 98.0 | NA | NA | NA | ||||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | ARG | A:68 | A:68 | 103.0 | 0.458 | -127.1 | 100.5 | 103.0 | 0.458 | 0.0 | |||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | ARG | A:68 | A:68 | 91.0 | 0.404 | -120.5 | 116.1 | 91.0 | 0.404 | 0.0 | |||||||
ARG | B:68 | B:68 | 89.0 | 0.396 | -116.2 | 116.1 | NA | NA | NA | ||||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | ARG | A:68 | A:68 | 93.0 | 0.413 | -127.5 | 104.1 | 93.0 | 0.413 | 0.0 | |||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | ARG | B:68 | B:68 | 102.0 | 0.453 | -116.3 | 111.4 | 102.0 | 0.453 | 0.0 | |||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | ARG | A:68 | A:68 | 102.0 | 0.453 | -121.6 | 105.8 | 102.0 | 0.453 | 0.0 | |||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | ARG | B:68 | Y:68 | 96.0 | 0.427 | -128.6 | 109.7 | 96.0 | 0.427 | 0.0 | |||||||
ARG | E:68 | B:68 | 95.0 | 0.422 | -130.5 | 113.1 | NA | NA | NA | ||||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | ARG | A:68 | A:68 | 94.0 | 0.418 | -130.0 | 106.8 | 94.0 | 0.418 | 0.0 | |||||||
ARG | D:68 | D:68 | 95.0 | 0.422 | -130.3 | 106.9 | NA | NA | NA | ||||||||||||||
ARG | G:68 | G:68 | 92.0 | 0.409 | -131.0 | 106.9 | NA | NA | NA | ||||||||||||||
ARG | J:68 | J:68 | 93.0 | 0.413 | -131.1 | 107.0 | NA | NA | NA | ||||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:68 | d:68 | 99.0 | 0.44 | -117.1 | 94.6 | 99.0 | 0.44 | 0.0 | |||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | ARG | A:70 | A:68 | 100.0 | 0.444 | -108.2 | 106.8 | 100.0 | 0.444 | 0.0 | |||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | ARG | A:70 | A:68 | 73.0 | 0.324 | -121.3 | 100.2 | 73.0 | 0.324 | 0.0 |
HOH |
3.170 |
NH1 |
O |
|||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | T:71 | d:68 | 102.0 | 0.453 | -118.7 | 95.2 | 102.0 | 0.453 | 0.0 | |||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | N:71 | d:68 | 97.0 | 0.431 | -121.1 | 97.2 | 97.0 | 0.431 | 0.0 | |||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | Z:71 | d:68 | 97.0 | 0.431 | -120.2 | 98.4 | 97.0 | 0.431 | 0.0 | |||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | ARG | Z:71 | d:68 | 97.0 | 0.431 | -120.3 | 98.4 | 97.0 | 0.431 | 0.0 | |||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | A:72 | A:68 | 99.0 | 0.44 | -112.7 | 100.8 | 99.0 | 0.44 | 0.0 | |||||||
ARG | C:72 | C:68 | 100.0 | 0.444 | -112.7 | 100.9 | NA | NA | NA | ||||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:72 | K:68 | 103.0 | 0.458 | -133.0 | 92.3 | 103.0 | 0.458 | 0.0 | |||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:91 | K:68 | 93.0 | 0.413 | -133.2 | 95.0 | 93.0 | 0.413 | 0.0 | |||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:91 | K:68 | 109.0 | 0.484 | -138.8 | 90.0 | 109.0 | 0.484 | 0.0 | |||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | K:91 | K:68 | 89.0 | 0.396 | -136.7 | 98.3 | 89.0 | 0.396 | 0.0 | |||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | ARG | L:91 | K:68 | 85.0 | 0.378 | -137.6 | 95.9 | 85.0 | 0.378 | 0.0 | |||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | ARG | C:87 | C:68 | 98.0 | 0.436 | -112.7 | 100.8 | 98.0 | 0.436 | 0.0 | |||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | ARG | A:87 | A:68 | 93.0 | 0.413 | -127.1 | 92.5 | 93.0 | 0.413 | 0.0 | |||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | ARG | A:87 | A:68 | 56.0 | NA | -130.2 | 92.7 | 56.0 | NA | NA | |||||||
ARG | E:87 | E:68 | 56.0 | NA | -130.1 | 92.6 | NA | NA | NA | ||||||||||||||
ARG | I:87 | I:68 | 56.0 | NA | -130.2 | 92.6 | NA | NA | NA | ||||||||||||||
ARG | M:87 | M:68 | 57.0 | NA | -130.2 | 92.7 | NA | NA | NA | ||||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:86 | A:68 | 100.0 | 0.444 | -112.8 | 103.9 | 100.0 | 0.444 | 0.0 |
HOH |
2.963 |
NH2 |
O |
|||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:86 | A:68 | 99.0 | 0.44 | -112.9 | 100.9 | 99.0 | 0.44 | 0.0 |
HOH |
5.009 |
N |
O |
|||
3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:86 | A:68 | 95.0 | 0.422 | -128.5 | 102.2 | 95.0 | 0.422 | 0.0 |
HOH |
2.779 |
N |
O |
|||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:86 | A:68 | 79.0 | 0.351 | -121.3 | 94.1 | 79.0 | 0.351 | 0.0 | |||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:86 | A:68 | 80.0 | 0.356 | -123.5 | 93.5 | 80.0 | 0.356 | 0.0 | |||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | ARG | A:86 | A:68 | 81.0 | 0.36 | -123.2 | 94.8 | 81.0 | 0.36 | 0.0 | |||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | ARG | A:86 | A:68 | 94.0 | 0.418 | -130.8 | 111.9 | 94.0 | 0.418 | 0.0 | |||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | ARG | A:67 | A:68 | 93.0 | 0.413 | -112.4 | 109.8 | 93.0 | 0.413 | 0.0 | |||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 133.0 | 0.591 | -112.0 | 104.4 | 133.0 | 0.591 | 0.0 | |||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 121.0 | 0.538 | -115.1 | 115.5 | 121.0 | 0.538 | 0.0 | |||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 98.0 | 0.436 | -129.7 | 99.8 | 98.0 | 0.436 | 0.0 | |||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 80.0 | 0.356 | -147.5 | 109.6 | 80.0 | 0.356 | 0.0 | |||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 85.0 | 0.378 | -154.6 | 113.6 | 85.0 | 0.378 | 0.0 | |||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 93.0 | 0.413 | -144.3 | 108.9 | 93.0 | 0.413 | 0.0 | |||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 83.0 | 0.369 | -149.6 | 114.2 | 83.0 | 0.369 | 0.0 | |||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 86.0 | 0.382 | -147.3 | 118.9 | 86.0 | 0.382 | 0.0 | |||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | ARG | A:71 | A:68 | 96.0 | 0.427 | -143.5 | 106.8 | 96.0 | 0.427 | 0.0 | |||||||
ARG | B:71 | B:68 | 99.0 | 0.44 | -145.3 | 112.8 | NA | NA | NA | ||||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:68 | A:68 | 98.0 | 0.436 | -137.0 | 104.1 | 98.0 | 0.436 | 0.0 | |||||||
ARG | B:68 | B:68 | 117.0 | 0.52 | -116.6 | 91.2 | NA | NA | NA | ||||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | ARG | A:68 | A:68 | 131.0 | 0.582 | -138.3 | 104.9 | 131.0 | 0.582 | 0.0 | |||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | ARG | A:68 | A:68 | 113.0 | 0.502 | -113.0 | 83.4 | 113.0 | 0.502 | 0.0 | |||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:87 | A:68 | 108.0 | 0.48 | -112.7 | 100.3 | 108.0 | 0.48 | 0.0 | |||||||
ARG | C:87 | C:68 | 104.0 | 0.462 | -109.9 | 101.9 | NA | NA | NA | ||||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:87 | A:68 | 117.0 | 0.52 | -120.4 | 89.8 | 117.0 | 0.52 | 0.0 | |||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:87 | A:68 | 94.0 | 0.418 | -117.0 | 106.8 | 94.0 | 0.418 | 0.0 | |||||||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | ARG | A:87 | A:68 | 97.0 | 0.431 | -116.2 | 102.0 | 97.0 | 0.431 | 0.0 | |||||||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | ARG | A:78 | A:68 | 123.0 | 0.547 | -116.8 | 101.3 | 123.0 | 0.547 | 0.0 | |||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | ARG | A:78 | A:68 | 97.0 | 0.431 | -122.1 | 109.4 | 97.0 | 0.431 | 0.0 | |||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | ARG | A:86 | A:68 | 110.0 | 0.489 | -122.0 | 105.2 | 110.0 | 0.489 | 0.0 | |||||||
ARG | C:86 | C:68 | 108.0 | 0.48 | -123.4 | 104.9 | NA | NA | NA | ||||||||||||||
ARG | E:86 | E:68 | 108.0 | 0.48 | -122.0 | 105.6 | NA | NA | NA | ||||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ARG | B:68 | B:68 | 95.0 | 0.422 | -124.8 | 103.3 | 95.0 | 0.422 | 0.0 |
HOH |
2.856 |
N |
O |
|||
6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | ARG | B:68 | B:68 | 99.0 | 0.44 | -125.7 | 102.1 | 99.0 | 0.44 | 0.0 |
HOH |
2.990 |
NH1 |
O |
|||
6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | ARG | A:72 | A:68 | 98.0 | 0.436 | -109.7 | 94.4 | 98.0 | 0.436 | 0.0 | |||||||
ARG | D:72 | D:68 | 96.0 | 0.427 | -109.8 | 94.6 | NA | NA | NA | ||||||||||||||
ARG | G:72 | G:68 | 134.0 | 0.596 | -110.0 | 97.4 | NA | NA | NA | ||||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | ARG | A:88 | A:68 | 103.0 | 0.458 | -119.1 | 98.4 | 103.0 | 0.458 | 0.0 | |||||||
ARG | D:88 | D:68 | 120.0 | 0.533 | -133.0 | 103.5 | NA | NA | NA | ||||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ARG | A:88 | A:68 | 100.0 | 0.444 | -115.3 | 101.6 | 100.0 | 0.444 | 0.0 | |||||||
ARG | D:88 | D:68 | 99.0 | 0.44 | -115.2 | 101.6 | NA | NA | NA | ||||||||||||||
ARG | G:88 | G:68 | 101.0 | 0.449 | -115.2 | 101.6 | NA | NA | NA | ||||||||||||||
ARG | J:88 | J:68 | 103.0 | 0.458 | -115.4 | 101.5 | NA | NA | NA | ||||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | ARG | A:88 | A:68 | 98.0 | 0.436 | -123.5 | 105.5 | 98.0 | 0.436 | 0.0 | |||||||
ARG | D:88 | D:68 | 99.0 | 0.44 | -123.9 | 105.9 | NA | NA | NA | ||||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:96 | A:68 | 92.0 | 0.409 | -124.0 | 108.9 | 92.0 | 0.409 | 0.0 | |||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | ARG | A:96 | A:68 | 91.0 | 0.404 | -133.4 | 108.0 | 91.0 | 0.404 | 0.0 | |||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:96 | A:68 | 96.0 | 0.427 | -141.4 | 103.5 | 96.0 | 0.427 | 0.0 | |||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:96 | A:68 | 117.0 | 0.52 | -126.0 | 102.4 | 117.0 | 0.52 | 0.0 | |||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | ARG | A:96 | A:68 | 88.0 | 0.391 | -129.5 | 98.9 | 88.0 | 0.391 | 0.0 | |||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ARG | A:96 | A:68 | 93.0 | 0.413 | -125.9 | 96.7 | 93.0 | 0.413 | 0.0 | |||||||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ARG | A:96 | A:68 | 94.0 | 0.418 | -122.9 | 97.5 | 94.0 | 0.418 | 0.0 | |||||||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | ARG | A:96 | A:68 | 97.0 | 0.431 | -125.6 | 97.2 | 97.0 | 0.431 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | ARG | A:68 | A:68 | 96.0 | 0.427 | -117.2 | 100.3 |