Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61099105 | . | C | A | CCDS31576.1:NM_001923.4:c.120gaG>gaT_NP_001914.3:p.40E>D | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | GLU | A:40 | A:40 | 25.0 | 0.132 | E | -106.6 | 134.8 | 25.0 | 0.132 | 0.0 |
HOH |
2.489 |
OE2 |
O |
||
| 5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | GLU | B:40 | Y:40 | 24.0 | 0.126 | E | -94.4 | 134.6 | 24.0 | 0.126 | 0.0 | ||||||
| GLU | D:40 | B:40 | 24.0 | 0.126 | E | -95.0 | 135.0 | NA | NA | NA | |||||||||||||
| 5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | GLU | A:40 | A:40 | 29.0 | 0.153 | E | -105.4 | 120.6 | 29.0 | 0.153 | 0.0 | ||||||
| GLU | B:40 | B:40 | 22.0 | 0.116 | E | -104.5 | 120.9 | NA | NA | NA | |||||||||||||
| 5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | GLU | A:40 | A:40 | 26.0 | 0.137 | E | -94.4 | 140.0 | 26.0 | 0.137 | 0.0 | ||||||
| 6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | GLU | A:40 | A:40 | 13.0 | 0.068 | E | -116.4 | 134.2 | 13.0 | 0.068 | 0.0 | ||||||
| GLU | B:40 | B:40 | 13.0 | 0.068 | E | -116.9 | 134.2 | NA | NA | NA | |||||||||||||
| 6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | GLU | A:40 | A:40 | 30.0 | 0.158 | E | -99.8 | 133.5 | 17.0 | 0.089 | 0.069 |
D:Q9BW61:0.068 |
|||||
| 6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | GLU | B:40 | B:40 | 19.0 | 0.1 | E | -104.7 | 114.6 | 16.0 | 0.084 | 0.016 |
D:Q9BW61:0.016 |
|||||
| 6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | GLU | A:40 | A:40 | 31.0 | 0.163 | E | -103.5 | 143.7 | 31.0 | 0.163 | 0.0 | ||||||
| 6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | GLU | B:40 | Y:40 | 28.0 | 0.147 | E | -106.9 | 128.6 | 28.0 | 0.147 | 0.0 | ||||||
| GLU | E:40 | B:40 | 27.0 | 0.142 | E | -107.2 | 127.4 | NA | NA | NA | |||||||||||||
| 7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | GLU | A:40 | A:40 | 21.0 | 0.111 | E | -122.4 | 133.1 | 21.0 | 0.111 | 0.0 | ||||||
| GLU | D:40 | D:40 | 22.0 | 0.116 | E | -120.3 | 133.2 | NA | NA | NA | |||||||||||||
| GLU | G:40 | G:40 | 21.0 | 0.111 | E | -119.1 | 133.4 | NA | NA | NA | |||||||||||||
| GLU | J:40 | J:40 | 21.0 | 0.111 | E | -113.7 | 133.0 | NA | NA | NA | |||||||||||||
| 7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLU | Z:40 | d:40 | 9.0 | 0.047 | E | -102.6 | 126.9 | 9.0 | 0.047 | 0.0 | ||||||
| 6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | GLU | A:42 | A:40 | 24.0 | 0.126 | E | -115.6 | 124.9 | 24.0 | 0.126 | 0.0 |
HOH |
5.075 |
OE2 |
O |
||
| 6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | GLU | A:42 | A:40 | 18.0 | 0.095 | E | -112.8 | 125.5 | 18.0 | 0.095 | 0.0 |
GOL HOH |
2.878 2.762 |
OE1 OE2 |
O3 O |
||
| 7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLU | T:43 | d:40 | 16.0 | 0.084 | E | -108.9 | 122.1 | 16.0 | 0.084 | 0.0 | ||||||
| 7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLU | N:43 | d:40 | 20.0 | 0.105 | E | -110.1 | 119.1 | 20.0 | 0.105 | 0.0 | ||||||
| 7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLU | Z:43 | d:40 | 20.0 | 0.105 | E | -109.6 | 120.8 | 20.0 | 0.105 | 0.0 | ||||||
| 7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | GLU | Z:43 | d:40 | 20.0 | 0.105 | E | -109.8 | 120.9 | 20.0 | 0.105 | 0.0 | ||||||
| 4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLU | A:44 | A:40 | 19.0 | 0.1 | E | -115.1 | 132.2 | 19.0 | 0.1 | 0.0 | ||||||
| GLU | C:44 | C:40 | 21.0 | 0.111 | E | -115.2 | 132.1 | NA | NA | NA | |||||||||||||
| 6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:44 | K:40 | 20.0 | 0.105 | E | -111.3 | 133.1 | 20.0 | 0.105 | 0.0 | ||||||
| 6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:63 | K:40 | 19.0 | 0.1 | E | -108.9 | 136.8 | 19.0 | 0.1 | 0.0 | ||||||
| 6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:63 | K:40 | 31.0 | 0.163 | E | -107.2 | 138.7 | 31.0 | 0.163 | 0.0 | ||||||
| 6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | K:63 | K:40 | 45.0 | 0.237 | E | -111.7 | 134.8 | 45.0 | 0.237 | 0.0 | ||||||
| 6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | GLU | L:63 | K:40 | 8.0 | 0.042 | E | -110.8 | 133.4 | 8.0 | 0.042 | 0.0 | ||||||
| 4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | GLU | C:59 | C:40 | 21.0 | 0.111 | E | -115.2 | 132.3 | 21.0 | 0.111 | 0.0 | ||||||
| 4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | GLU | A:59 | A:40 | 31.0 | 0.163 | E | -110.5 | 122.8 | 31.0 | 0.163 | 0.0 | ||||||
| 7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | GLU | A:59 | A:40 | 50.0 | NA | E | -110.4 | 119.7 | 50.0 | NA | NA | ||||||
| GLU | E:59 | E:40 | 51.0 | NA | E | -110.4 | 119.7 | NA | NA | NA | |||||||||||||
| GLU | I:59 | I:40 | 51.0 | NA | E | -110.4 | 119.7 | NA | NA | NA | |||||||||||||
| GLU | M:59 | M:40 | 50.0 | NA | E | -110.4 | 119.7 | NA | NA | NA | |||||||||||||
| 3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:58 | A:40 | 23.0 | 0.121 | E | -116.9 | 126.6 | 23.0 | 0.121 | 0.0 |
HOH |
3.206 |
OE2 |
O |
||
| 3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:58 | A:40 | 22.0 | 0.116 | E | -115.1 | 132.0 | 22.0 | 0.116 | 0.0 |
HOH |
2.585 |
OE2 |
O |
||
| 3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:58 | A:40 | 22.0 | 0.116 | E | -104.7 | 132.2 | 22.0 | 0.116 | 0.0 |
HOH |
2.520 |
OE2 |
O |
||
| 4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLU | A:58 | A:40 | 25.0 | 0.132 | E | -97.8 | 121.3 | 25.0 | 0.132 | 0.0 |
HOH |
3.984 |
OE1 |
O |
||
| 4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLU | A:58 | A:40 | 26.0 | 0.137 | E | -100.8 | 121.2 | 26.0 | 0.137 | 0.0 | ||||||
| 4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | GLU | A:58 | A:40 | 27.0 | 0.142 | E | -92.9 | 125.6 | 27.0 | 0.142 | 0.0 | ||||||
| 6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | GLU | A:58 | A:40 | 20.0 | 0.105 | E | -106.8 | 135.4 | 20.0 | 0.105 | 0.0 | ||||||
| 4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | GLU | A:39 | A:40 | 20.0 | 0.105 | E | -91.7 | 135.2 | 20.0 | 0.105 | 0.0 | ||||||
| 3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 30.0 | 0.158 | E | -108.7 | 132.8 | 30.0 | 0.158 | 0.0 | ||||||
| 3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 21.0 | 0.111 | E | -116.3 | 137.1 | 21.0 | 0.111 | 0.0 | ||||||
| 3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 22.0 | 0.116 | E | -116.5 | 122.4 | 22.0 | 0.116 | 0.0 | ||||||
| 3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 29.0 | 0.153 | E | -123.7 | 125.0 | 29.0 | 0.153 | 0.0 | ||||||
| 3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 24.0 | 0.126 | E | -115.9 | 134.6 | 24.0 | 0.126 | 0.0 | ||||||
| 3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 26.0 | 0.137 | E | -101.3 | 133.9 | 26.0 | 0.137 | 0.0 | ||||||
| 3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 31.0 | 0.163 | E | -102.0 | 134.8 | 31.0 | 0.163 | 0.0 | ||||||
| 3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 24.0 | 0.126 | E | -113.0 | 136.2 | 24.0 | 0.126 | 0.0 | ||||||
| 3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | GLU | A:43 | A:40 | 38.0 | 0.2 | E | -74.7 | 136.4 | 38.0 | 0.2 | 0.0 | ||||||
| GLU | B:43 | B:40 | 25.0 | 0.132 | E | -81.8 | 134.7 | NA | NA | NA | |||||||||||||
| 2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLU | A:40 | A:40 | 26.0 | 0.137 | E | -108.4 | 136.3 | 26.0 | 0.137 | 0.0 | ||||||
| GLU | B:40 | B:40 | 24.0 | 0.126 | E | -103.3 | 129.3 | NA | NA | NA | |||||||||||||
| 2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | GLU | A:40 | A:40 | 23.0 | 0.121 | E | -115.1 | 127.4 | 23.0 | 0.121 | 0.0 | ||||||
| 2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | GLU | A:40 | A:40 | 15.0 | 0.079 | E | -108.5 | 127.6 | 15.0 | 0.079 | 0.0 | ||||||
| 4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:59 | A:40 | 16.0 | 0.084 | E | -107.2 | 132.7 | 16.0 | 0.084 | 0.0 | ||||||
| GLU | C:59 | C:40 | 16.0 | 0.084 | E | -105.2 | 136.4 | NA | NA | NA | |||||||||||||
| 4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:59 | A:40 | 19.0 | 0.1 | E | -120.6 | 123.1 | 19.0 | 0.1 | 0.0 | ||||||
| 4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:59 | A:40 | 29.0 | 0.153 | E | -112.0 | 125.4 | 29.0 | 0.153 | 0.0 | ||||||
| 4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | GLU | A:59 | A:40 | 18.0 | 0.095 | E | -124.9 | 119.8 | 18.0 | 0.095 | 0.0 |
HOH |
4.538 |
OE1 |
O |
||
| 4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | GLU | A:50 | A:40 | 38.0 | 0.2 | E | -115.5 | 131.9 | 38.0 | 0.2 | 0.0 | ||||||
| 4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | GLU | A:50 | A:40 | 36.0 | 0.189 | E | -115.9 | 140.4 | 36.0 | 0.189 | 0.0 | ||||||
| 3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | GLU | A:58 | A:40 | 25.0 | 0.132 | E | -108.1 | 118.7 | 25.0 | 0.132 | 0.0 | ||||||
| GLU | C:58 | C:40 | 24.0 | 0.126 | E | -109.4 | 119.2 | NA | NA | NA | |||||||||||||
| GLU | E:58 | E:40 | 24.0 | 0.126 | E | -108.2 | 119.2 | NA | NA | NA | |||||||||||||
| 6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLU | B:40 | B:40 | 29.0 | 0.153 | E | -100.5 | 120.6 | 1.0 | 0.005 | 0.148 |
D:Q9BW61:0.147 |
HOH |
3.275 |
OE1 |
O |
|
| 6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | GLU | B:40 | B:40 | 26.0 | 0.137 | E | -87.1 | 126.5 | 1.0 | 0.005 | 0.132 |
D:Q9BW61:0.132 |
HOH |
3.566 |
OE2 |
O |
|
| 6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | GLU | A:44 | A:40 | 29.0 | 0.153 | E | -101.3 | 137.2 | 29.0 | 0.153 | 0.0 | ||||||
| GLU | D:44 | D:40 | 29.0 | 0.153 | E | -98.0 | 137.1 | NA | NA | NA | |||||||||||||
| GLU | G:44 | G:40 | 22.0 | 0.116 | E | -102.6 | 137.0 | NA | NA | NA | |||||||||||||
| 5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | GLU | A:60 | A:40 | 28.0 | 0.147 | E | -107.2 | 134.0 | 28.0 | 0.147 | 0.0 |
HOH |
3.390 |
OE1 |
O |
||
| GLU | D:60 | D:40 | 28.0 | 0.147 | E | -107.3 | 133.3 | NA | NA | NA | |||||||||||||
| 6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLU | A:60 | A:40 | 22.0 | 0.116 | E | -102.3 | 132.1 | 22.0 | 0.116 | 0.0 |
HOH |
3.241 |
OE1 |
O |
||
| GLU | D:60 | D:40 | 24.0 | 0.126 | E | -102.4 | 133.9 | NA | NA | NA | |||||||||||||
| GLU | G:60 | G:40 | 23.0 | 0.121 | E | -102.3 | 133.5 | NA | NA | NA | |||||||||||||
| GLU | J:60 | J:40 | 12.0 | 0.063 | E | -102.0 | 134.2 | NA | NA | NA | |||||||||||||
| 6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | GLU | A:60 | A:40 | 26.0 | 0.137 | E | -127.3 | 132.6 | 26.0 | 0.137 | 0.0 | ||||||
| GLU | D:60 | D:40 | 27.0 | 0.142 | E | -127.4 | 132.4 | NA | NA | NA | |||||||||||||
| 6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:68 | A:40 | 11.0 | 0.058 | E | -115.2 | 126.2 | 11.0 | 0.058 | 0.0 | ||||||
| 6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | GLU | A:68 | A:40 | 12.0 | 0.063 | E | -120.7 | 130.3 | 12.0 | 0.063 | 0.0 | ||||||
| 6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:68 | A:40 | 14.0 | 0.074 | E | -114.8 | 119.6 | 14.0 | 0.074 | 0.0 | ||||||
| 6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:68 | A:40 | 27.0 | 0.142 | E | -118.3 | 135.5 | 27.0 | 0.142 | 0.0 | ||||||
| 6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | GLU | A:68 | A:40 | 12.0 | 0.063 | E | -111.4 | 133.2 | 12.0 | 0.063 | 0.0 | ||||||
| 6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLU | A:68 | A:40 | 24.0 | 0.126 | E | -101.3 | 126.1 | 16.0 | 0.084 | 0.042 |
E:Q9BW61:0.042 |
|||||
| 6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLU | A:68 | A:40 | 24.0 | 0.126 | E | -101.3 | 125.7 | 17.0 | 0.089 | 0.037 |
E:Q9BW61:0.037 |
|||||
| 6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | GLU | A:68 | A:40 | 22.0 | 0.116 | E | -105.4 | 126.9 | 15.0 | 0.079 | 0.037 |
E:Q9BW61:0.037 |
|||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | GLU | A:40 | A:40 | 24.0 | 0.126 | E | -107.4 | 138.7 | |