Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61099151 . G A CCDS31576.1:NM_001923.4:c.74tCg>tTg_NP_001914.3:p.25S>L Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
2008-09-16 SER A:25 NA:NA DO NA DO DO DO NA NA NA
5hxb 2 Q16531 100.0 0.0 X-RAY
2016-06-29 SER B:25 Y:25 43.0 0.374 -160.6 151.4 43.0 0.374 0.0
SER D:25 B:25 42.0 0.365 -160.7 152.0 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
2016-10-05 SER A:25 A:25 37.0 0.322 S -153.7 158.1 37.0 0.322 0.0
SER B:25 B:25 39.0 0.339 -160.8 159.1 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
2017-05-03 SER A:25 A:25 33.0 0.287 -136.1 169.8 33.0 0.287 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
2018-12-12 SER A:25 A:25 57.0 0.496 S -130.3 -162.8 57.0 0.496 0.0
SER B:25 B:25 62.0 0.539 S -128.1 -164.6 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
2019-09-18 SER A:25 A:25 33.0 0.287 -122.8 171.4 33.0 0.287 0.0
6sj7 2 Q16531 100.0 0.0 EM
2019-12-18 SER B:25 B:25 25.0 0.217 S -151.7 -166.8 25.0 0.217 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
2020-04-15 SER A:25 A:25 50.0 0.435 -159.4 150.6 50.0 0.435 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
2020-12-02 SER B:25 Y:25 44.0 0.383 -153.1 141.6 44.0 0.383 0.0
SER E:25 B:25 44.0 0.383 -152.6 139.7 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
2021-06-02 SER A:25 A:25 51.0 0.443 -160.9 154.8 51.0 0.443 0.0
SER D:25 D:25 53.0 0.461 -160.9 154.8 NA NA NA
SER G:25 G:25 52.0 0.452 -160.4 154.8 NA NA NA
SER J:25 J:25 53.0 0.461 -160.5 154.8 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
2021-10-06 SER Z:25 d:25 38.0 0.33 -163.5 161.7 38.0 0.33 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
2021-07-28 SER A:27 A:25 31.0 0.27 -171.4 158.4 31.0 0.27 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
2021-07-21 SER A:27 A:25 32.0 0.278 -165.1 164.2 32.0 0.278 0.0 HOH
4.990
OG
O
7oo3 20 Q16531 100.0 0.0 EM
2021-10-06 SER T:28 d:25 32.0 0.278 -164.5 159.9 32.0 0.278 0.0
7oob 14 Q16531 100.0 0.0 EM
2021-10-13 SER N:28 d:25 15.0 0.13 -163.1 161.4 15.0 0.13 0.0
7opc 26 Q16531 100.0 0.0 EM
2021-10-13 SER Z:28 d:25 15.0 0.13 -163.5 161.5 15.0 0.13 0.0
7opd 26 Q16531 100.0 0.0 EM
2021-10-06 SER Z:28 d:25 15.0 0.13 -163.5 161.6 15.0 0.13 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
2011-12-14 SER A:29 A:25 34.0 0.296 -161.9 167.6 34.0 0.296 0.0
SER C:29 C:25 34.0 0.296 -162.4 167.5 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
2019-06-12 SER K:29 K:25 31.0 0.27 -163.6 158.6 31.0 0.27 0.0
6r8z 7 Q16531 100.0 0.0 EM
2019-06-12 SER K:48 K:25 18.0 0.157 -168.4 161.1 18.0 0.157 0.0
6r90 7 Q16531 100.0 0.0 EM
2019-06-12 SER K:48 K:25 31.0 0.27 -164.3 160.9 31.0 0.27 0.0
6r91 7 Q16531 100.0 0.0 EM
2019-06-12 SER K:48 K:25 32.0 0.278 -165.1 161.8 32.0 0.278 0.0
6r92 8 Q16531 100.0 0.0 EM
2019-06-12 SER L:48 K:25 24.0 0.209 -163.4 161.4 24.0 0.209 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
2011-12-14 SER C:44 C:25 33.0 0.287 -162.2 167.5 33.0 0.287 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
2011-12-07 SER A:44 A:25 48.0 0.417 -150.6 155.5 48.0 0.417 0.0
7okq 1 Q16531 100.0 0.0 EM
2021-10-13 SER A:44 A:25 44.0 NA -162.7 167.5 44.0 NA NA
SER E:44 E:25 44.0 NA -162.6 167.5 NA NA NA
SER I:44 I:25 44.0 NA -162.6 167.5 NA NA NA
SER M:44 M:25 44.0 NA -162.6 167.5 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
2009-01-20 SER A:43 A:25 26.0 0.226 -153.1 167.3 26.0 0.226 0.0 HOH
5.280
O
O
3ei2 1 Q16531 100.0 0.0 X-RAY
2009-01-20 SER A:43 A:25 32.0 0.278 -162.3 167.5 32.0 0.278 0.0 HOH
6.137
N
O
3ei3 1 Q16531 100.0 0.0 X-RAY
2009-01-20 SER A:43 A:25 24.0 0.209 -155.9 167.1 24.0 0.209 0.0 HOH
3.570
CA
O
4ci1 1 Q16531 100.0 0.0 X-RAY
2014-07-16 SER A:43 A:25 41.0 0.357 -128.2 157.0 41.0 0.357 0.0
4ci2 1 Q16531 100.0 0.0 X-RAY
2014-07-16 SER A:43 A:25 36.0 0.313 -160.2 148.5 36.0 0.313 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
2014-07-16 SER A:43 A:25 41.0 0.357 -123.5 156.2 41.0 0.357 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
2019-01-30 SER A:43 A:25 58.0 0.504 E -157.0 171.0 58.0 0.504 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
2014-08-06 SER A:24 A:25 37.0 0.322 -161.7 162.8 37.0 0.322 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 27.0 0.235 -164.7 153.6 27.0 0.235 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 19.0 0.165 -158.2 166.1 19.0 0.165 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 29.0 0.252 -160.6 178.2 29.0 0.252 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 33.0 0.287 -156.3 159.1 33.0 0.287 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 37.0 0.322 E -150.7 164.5 37.0 0.322 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 31.0 0.27 -142.2 155.1 31.0 0.27 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 31.0 0.27 -151.3 161.2 31.0 0.27 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 32.0 0.278 -133.0 168.9 32.0 0.278 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
2009-12-08 SER A:28 A:25 37.0 0.322 -142.1 140.4 37.0 0.322 0.0
SER B:28 B:25 38.0 0.33 S -113.3 152.5 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
2006-02-28 SER A:25 A:25 28.0 0.243 -170.2 145.1 28.0 0.243 0.0
SER B:25 B:25 34.0 0.296 -148.7 -95.2 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
2006-02-28 SER A:25 A:25 34.0 0.296 -143.4 139.1 34.0 0.296 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
2006-10-03 SER A:25 A:25 22.0 0.191 -160.2 158.7 22.0 0.191 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:44 A:25 21.0 0.183 -165.9 175.6 21.0 0.183 0.0
SER C:44 C:25 40.0 0.348 E -163.5 143.1 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:44 A:25 29.0 0.252 -178.3 160.2 29.0 0.252 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:44 A:25 31.0 0.27 -159.9 173.3 31.0 0.27 0.0
4a09 1 Q16531 99.91 0.0 X-RAY
2011-11-30 SER A:44 A:25 42.0 0.365 -141.8 -179.2 42.0 0.365 0.0
4e54 1 Q16531 100.0 0.0 X-RAY
2012-08-08 SER A:35 A:25 40.0 0.348 -162.3 166.3 40.0 0.348 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
2012-08-22 SER A:35 A:25 18.0 0.157 -179.8 177.8 18.0 0.157 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
2009-01-20 SER A:43 A:25 23.0 0.2 -114.1 -97.8 23.0 0.2 0.0
SER C:43 C:25 23.0 0.2 -114.0 -98.3 NA NA NA
SER E:43 E:25 23.0 0.2 -114.4 -97.7 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
2019-12-18 SER B:25 B:25 32.0 0.278 -163.3 161.1 32.0 0.278 0.0 HOH
3.866
CA
O
6ue5 2 Q16531 100.0 0.0 X-RAY
2019-12-18 SER B:25 B:25 36.0 0.313 -157.8 158.3 36.0 0.313 0.0 HOH
3.048
OG
O
6td3 1 Q16531 100.0 0.0 X-RAY
2020-06-17 SER A:29 A:25 22.0 0.191 -152.3 160.2 22.0 0.191 0.0
SER D:29 D:25 23.0 0.2 -152.5 160.3 NA NA NA
SER G:29 G:25 27.0 0.235 -152.2 160.4 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
2016-02-24 SER A:45 A:25 43.0 0.374 -161.5 154.8 43.0 0.374 0.0
SER D:45 D:25 41.0 0.357 -161.5 154.8 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
2018-11-07 SER A:45 A:25 35.0 0.304 -140.1 148.1 35.0 0.304 0.0
SER D:45 D:25 35.0 0.304 -140.1 148.1 NA NA NA
SER G:45 G:25 34.0 0.296 -140.3 148.1 NA NA NA
SER J:45 J:25 35.0 0.304 -140.0 148.1 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
2018-11-07 SER A:45 A:25 18.0 0.157 -166.4 153.8 18.0 0.157 0.0
SER D:45 D:25 22.0 0.191 -166.4 155.5 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
2018-05-30 SER A:53 A:25 42.0 0.365 -157.5 155.0 42.0 0.365 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
2018-06-06 SER A:53 A:25 49.0 0.426 -154.3 162.1 49.0 0.426 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
2018-05-30 SER A:53 A:25 44.0 0.383 -149.7 154.1 44.0 0.383 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
2018-05-30 SER A:53 A:25 49.0 0.426 -137.6 153.2 49.0 0.426 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
2018-05-30 SER A:53 A:25 44.0 0.383 -156.0 154.9 44.0 0.383 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
2019-11-13 SER A:53 A:25 28.0 0.243 -134.7 161.6 28.0 0.243 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
2019-11-13 SER A:53 A:25 33.0 0.287 -153.7 160.3 33.0 0.287 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
2019-11-13 SER A:53 A:25 26.0 0.226 -167.5 162.5 26.0 0.226 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 SER A:25 A:25 37.0 0.322 S -144.1 -175.8