Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr11 | 61099151 | . | G | A | CCDS31576.1:NM_001923.4:c.74tCg>tTg_NP_001914.3:p.25S>L | Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
3e0c | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2008-09-16 | SER | A:25 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
5hxb | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-06-29 | SER | B:25 | Y:25 | 43.0 | 0.374 | -160.6 | 151.4 | 43.0 | 0.374 | 0.0 | |||||||
SER | D:25 | B:25 | 42.0 | 0.365 | -160.7 | 152.0 | NA | NA | NA | ||||||||||||||
5jk7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-10-05 | SER | A:25 | A:25 | 37.0 | 0.322 | S | -153.7 | 158.1 | 37.0 | 0.322 | 0.0 | ||||||
SER | B:25 | B:25 | 39.0 | 0.339 | -160.8 | 159.1 | NA | NA | NA | ||||||||||||||
5v3o | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2017-05-03 | SER | A:25 | A:25 | 33.0 | 0.287 | -136.1 | 169.8 | 33.0 | 0.287 | 0.0 | |||||||
6dsz | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-12-12 | SER | A:25 | A:25 | 57.0 | 0.496 | S | -130.3 | -162.8 | 57.0 | 0.496 | 0.0 | ||||||
SER | B:25 | B:25 | 62.0 | 0.539 | S | -128.1 | -164.6 | NA | NA | NA | |||||||||||||
6pai | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-09-18 | SER | A:25 | A:25 | 33.0 | 0.287 | -122.8 | 171.4 | 33.0 | 0.287 | 0.0 | |||||||
6sj7 | 2 | Q16531 | 100.0 | 0.0 |
EM |
2019-12-18 | SER | B:25 | B:25 | 25.0 | 0.217 | S | -151.7 | -166.8 | 25.0 | 0.217 | 0.0 | ||||||
6uml | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-04-15 | SER | A:25 | A:25 | 50.0 | 0.435 | -159.4 | 150.6 | 50.0 | 0.435 | 0.0 | |||||||
6xk9 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-12-02 | SER | B:25 | Y:25 | 44.0 | 0.383 | -153.1 | 141.6 | 44.0 | 0.383 | 0.0 | |||||||
SER | E:25 | B:25 | 44.0 | 0.383 | -152.6 | 139.7 | NA | NA | NA | ||||||||||||||
7lps | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-06-02 | SER | A:25 | A:25 | 51.0 | 0.443 | -160.9 | 154.8 | 51.0 | 0.443 | 0.0 | |||||||
SER | D:25 | D:25 | 53.0 | 0.461 | -160.9 | 154.8 | NA | NA | NA | ||||||||||||||
SER | G:25 | G:25 | 52.0 | 0.452 | -160.4 | 154.8 | NA | NA | NA | ||||||||||||||
SER | J:25 | J:25 | 53.0 | 0.461 | -160.5 | 154.8 | NA | NA | NA | ||||||||||||||
7oop | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | SER | Z:25 | d:25 | 38.0 | 0.33 | -163.5 | 161.7 | 38.0 | 0.33 | 0.0 | |||||||
6zue | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-28 | SER | A:27 | A:25 | 31.0 | 0.27 | -171.4 | 158.4 | 31.0 | 0.27 | 0.0 | |||||||
6zx9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2021-07-21 | SER | A:27 | A:25 | 32.0 | 0.278 | -165.1 | 164.2 | 32.0 | 0.278 | 0.0 |
HOH |
4.990 |
OG |
O |
|||
7oo3 | 20 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | SER | T:28 | d:25 | 32.0 | 0.278 | -164.5 | 159.9 | 32.0 | 0.278 | 0.0 | |||||||
7oob | 14 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | SER | N:28 | d:25 | 15.0 | 0.13 | -163.1 | 161.4 | 15.0 | 0.13 | 0.0 | |||||||
7opc | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | SER | Z:28 | d:25 | 15.0 | 0.13 | -163.5 | 161.5 | 15.0 | 0.13 | 0.0 | |||||||
7opd | 26 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-06 | SER | Z:28 | d:25 | 15.0 | 0.13 | -163.5 | 161.6 | 15.0 | 0.13 | 0.0 | |||||||
4a0l | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | SER | A:29 | A:25 | 34.0 | 0.296 | -161.9 | 167.6 | 34.0 | 0.296 | 0.0 | |||||||
SER | C:29 | C:25 | 34.0 | 0.296 | -162.4 | 167.5 | NA | NA | NA | ||||||||||||||
6r8y | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:29 | K:25 | 31.0 | 0.27 | -163.6 | 158.6 | 31.0 | 0.27 | 0.0 | |||||||
6r8z | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:48 | K:25 | 18.0 | 0.157 | -168.4 | 161.1 | 18.0 | 0.157 | 0.0 | |||||||
6r90 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:48 | K:25 | 31.0 | 0.27 | -164.3 | 160.9 | 31.0 | 0.27 | 0.0 | |||||||
6r91 | 7 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | K:48 | K:25 | 32.0 | 0.278 | -165.1 | 161.8 | 32.0 | 0.278 | 0.0 | |||||||
6r92 | 8 | Q16531 | 100.0 | 0.0 |
EM |
2019-06-12 | SER | L:48 | K:25 | 24.0 | 0.209 | -163.4 | 161.4 | 24.0 | 0.209 | 0.0 | |||||||
4a0k | 3 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-14 | SER | C:44 | C:25 | 33.0 | 0.287 | -162.2 | 167.5 | 33.0 | 0.287 | 0.0 | |||||||
4a11 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2011-12-07 | SER | A:44 | A:25 | 48.0 | 0.417 | -150.6 | 155.5 | 48.0 | 0.417 | 0.0 | |||||||
7okq | 1 | Q16531 | 100.0 | 0.0 |
EM |
2021-10-13 | SER | A:44 | A:25 | 44.0 | NA | -162.7 | 167.5 | 44.0 | NA | NA | |||||||
SER | E:44 | E:25 | 44.0 | NA | -162.6 | 167.5 | NA | NA | NA | ||||||||||||||
SER | I:44 | I:25 | 44.0 | NA | -162.6 | 167.5 | NA | NA | NA | ||||||||||||||
SER | M:44 | M:25 | 44.0 | NA | -162.6 | 167.5 | NA | NA | NA | ||||||||||||||
3ei1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | SER | A:43 | A:25 | 26.0 | 0.226 | -153.1 | 167.3 | 26.0 | 0.226 | 0.0 |
HOH |
5.280 |
O |
O |
|||
3ei2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | SER | A:43 | A:25 | 32.0 | 0.278 | -162.3 | 167.5 | 32.0 | 0.278 | 0.0 |
HOH |
6.137 |
N |
O |
|||
3ei3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2009-01-20 | SER | A:43 | A:25 | 24.0 | 0.209 | -155.9 | 167.1 | 24.0 | 0.209 | 0.0 |
HOH |
3.570 |
CA |
O |
|||
4ci1 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | SER | A:43 | A:25 | 41.0 | 0.357 | -128.2 | 157.0 | 41.0 | 0.357 | 0.0 | |||||||
4ci2 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | SER | A:43 | A:25 | 36.0 | 0.313 | -160.2 | 148.5 | 36.0 | 0.313 | 0.0 | |||||||
4ci3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-07-16 | SER | A:43 | A:25 | 41.0 | 0.357 | -123.5 | 156.2 | 41.0 | 0.357 | 0.0 | |||||||
6fcv | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-01-30 | SER | A:43 | A:25 | 58.0 | 0.504 | E | -157.0 | 171.0 | 58.0 | 0.504 | 0.0 | ||||||
4tz4 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2014-08-06 | SER | A:24 | A:25 | 37.0 | 0.322 | -161.7 | 162.8 | 37.0 | 0.322 | 0.0 | |||||||
3i7h | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 27.0 | 0.235 | -164.7 | 153.6 | 27.0 | 0.235 | 0.0 | |||||||
3i7k | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 19.0 | 0.165 | -158.2 | 166.1 | 19.0 | 0.165 | 0.0 | |||||||
3i7l | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 29.0 | 0.252 | -160.6 | 178.2 | 29.0 | 0.252 | 0.0 | |||||||
3i7n | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 33.0 | 0.287 | -156.3 | 159.1 | 33.0 | 0.287 | 0.0 | |||||||
3i7o | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 37.0 | 0.322 | E | -150.7 | 164.5 | 37.0 | 0.322 | 0.0 | ||||||
3i7p | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 31.0 | 0.27 | -142.2 | 155.1 | 31.0 | 0.27 | 0.0 | |||||||
3i89 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 31.0 | 0.27 | -151.3 | 161.2 | 31.0 | 0.27 | 0.0 | |||||||
3i8c | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 32.0 | 0.278 | -133.0 | 168.9 | 32.0 | 0.278 | 0.0 | |||||||
3i8e | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-12-08 | SER | A:28 | A:25 | 37.0 | 0.322 | -142.1 | 140.4 | 37.0 | 0.322 | 0.0 | |||||||
SER | B:28 | B:25 | 38.0 | 0.33 | S | -113.3 | 152.5 | NA | NA | NA | |||||||||||||
2b5l | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | SER | A:25 | A:25 | 28.0 | 0.243 | -170.2 | 145.1 | 28.0 | 0.243 | 0.0 | |||||||
SER | B:25 | B:25 | 34.0 | 0.296 | -148.7 | -95.2 | NA | NA | NA | ||||||||||||||
2b5m | 1 | 13435359 | 99.74 | 0.0 |
X-RAY |
2006-02-28 | SER | A:25 | A:25 | 34.0 | 0.296 | -143.4 | 139.1 | 34.0 | 0.296 | 0.0 | |||||||
2hye | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2006-10-03 | SER | A:25 | A:25 | 22.0 | 0.191 | -160.2 | 158.7 | 22.0 | 0.191 | 0.0 | |||||||
4a0b | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:44 | A:25 | 21.0 | 0.183 | -165.9 | 175.6 | 21.0 | 0.183 | 0.0 | |||||||
SER | C:44 | C:25 | 40.0 | 0.348 | E | -163.5 | 143.1 | NA | NA | NA | |||||||||||||
4a0a | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:44 | A:25 | 29.0 | 0.252 | -178.3 | 160.2 | 29.0 | 0.252 | 0.0 | |||||||
4a08 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:44 | A:25 | 31.0 | 0.27 | -159.9 | 173.3 | 31.0 | 0.27 | 0.0 | |||||||
4a09 | 1 | Q16531 | 99.91 | 0.0 |
X-RAY |
2011-11-30 | SER | A:44 | A:25 | 42.0 | 0.365 | -141.8 | -179.2 | 42.0 | 0.365 | 0.0 | |||||||
4e54 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-08 | SER | A:35 | A:25 | 40.0 | 0.348 | -162.3 | 166.3 | 40.0 | 0.348 | 0.0 | |||||||
4e5z | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2012-08-22 | SER | A:35 | A:25 | 18.0 | 0.157 | -179.8 | 177.8 | 18.0 | 0.157 | 0.0 | |||||||
3ei4 | 1 | Q16531 | 99.74 | 0.0 |
X-RAY |
2009-01-20 | SER | A:43 | A:25 | 23.0 | 0.2 | -114.1 | -97.8 | 23.0 | 0.2 | 0.0 | |||||||
SER | C:43 | C:25 | 23.0 | 0.2 | -114.0 | -98.3 | NA | NA | NA | ||||||||||||||
SER | E:43 | E:25 | 23.0 | 0.2 | -114.4 | -97.7 | NA | NA | NA | ||||||||||||||
6ud7 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | SER | B:25 | B:25 | 32.0 | 0.278 | -163.3 | 161.1 | 32.0 | 0.278 | 0.0 |
HOH |
3.866 |
CA |
O |
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6ue5 | 2 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-12-18 | SER | B:25 | B:25 | 36.0 | 0.313 | -157.8 | 158.3 | 36.0 | 0.313 | 0.0 |
HOH |
3.048 |
OG |
O |
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6td3 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2020-06-17 | SER | A:29 | A:25 | 22.0 | 0.191 | -152.3 | 160.2 | 22.0 | 0.191 | 0.0 | |||||||
SER | D:29 | D:25 | 23.0 | 0.2 | -152.5 | 160.3 | NA | NA | NA | ||||||||||||||
SER | G:29 | G:25 | 27.0 | 0.235 | -152.2 | 160.4 | NA | NA | NA | ||||||||||||||
5fqd | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2016-02-24 | SER | A:45 | A:25 | 43.0 | 0.374 | -161.5 | 154.8 | 43.0 | 0.374 | 0.0 | |||||||
SER | D:45 | D:25 | 41.0 | 0.357 | -161.5 | 154.8 | NA | NA | NA | ||||||||||||||
6h0f | 1 | ? | 100.0 | 0.0 |
X-RAY |
2018-11-07 | SER | A:45 | A:25 | 35.0 | 0.304 | -140.1 | 148.1 | 35.0 | 0.304 | 0.0 | |||||||
SER | D:45 | D:25 | 35.0 | 0.304 | -140.1 | 148.1 | NA | NA | NA | ||||||||||||||
SER | G:45 | G:25 | 34.0 | 0.296 | -140.3 | 148.1 | NA | NA | NA | ||||||||||||||
SER | J:45 | J:25 | 35.0 | 0.304 | -140.0 | 148.1 | NA | NA | NA | ||||||||||||||
6h0g | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-11-07 | SER | A:45 | A:25 | 18.0 | 0.157 | -166.4 | 153.8 | 18.0 | 0.157 | 0.0 | |||||||
SER | D:45 | D:25 | 22.0 | 0.191 | -166.4 | 155.5 | NA | NA | NA | ||||||||||||||
6bn7 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:53 | A:25 | 42.0 | 0.365 | -157.5 | 155.0 | 42.0 | 0.365 | 0.0 | |||||||
6bn8 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | SER | A:53 | A:25 | 49.0 | 0.426 | -154.3 | 162.1 | 49.0 | 0.426 | 0.0 | |||||||
6bn9 | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:53 | A:25 | 44.0 | 0.383 | -149.7 | 154.1 | 44.0 | 0.383 | 0.0 | |||||||
6bnb | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:53 | A:25 | 49.0 | 0.426 | -137.6 | 153.2 | 49.0 | 0.426 | 0.0 | |||||||
6boy | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2018-05-30 | SER | A:53 | A:25 | 44.0 | 0.383 | -156.0 | 154.9 | 44.0 | 0.383 | 0.0 | |||||||
6q0r | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | SER | A:53 | A:25 | 28.0 | 0.243 | -134.7 | 161.6 | 28.0 | 0.243 | 0.0 | |||||||
6q0v | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | SER | A:53 | A:25 | 33.0 | 0.287 | -153.7 | 160.3 | 33.0 | 0.287 | 0.0 | |||||||
6q0w | 1 | Q16531 | 100.0 | 0.0 |
X-RAY |
2019-11-13 | SER | A:53 | A:25 | 26.0 | 0.226 | -167.5 | 162.5 | 26.0 | 0.226 | 0.0 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q16531-f1 | 1 | Q16531 | 100.0 | 0.0 | SER | A:25 | A:25 | 37.0 | 0.322 | S | -144.1 | -175.8 |