Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr11 61100389 . A C CCDS31576.1:NM_001923.4:c.52Tgc>Ggc_NP_001914.3:p.18C>G Homo sapiens damage specific DNA binding protein 1 (DDB1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3e0c 1 Q16531 100.0 0.0 X-RAY
 2008-09-16 CYS A:18 A:18 18.0 0.133 E -141.2 138.8 18.0 0.133 0.0 HOH
 4.371
 O
 O
5hxb 2 Q16531 100.0 0.0 X-RAY
 2016-06-29 CYS B:18 Y:18 20.0 0.148 E -161.7 124.8 20.0 0.148 0.0
CYS D:18 B:18 19.0 0.141 E -161.9 124.6 NA NA NA
5jk7 1 Q16531 100.0 0.0 X-RAY
 2016-10-05 CYS A:18 A:18 24.0 0.178 E -150.1 146.8 24.0 0.178 0.0
CYS B:18 B:18 21.0 0.156 E -150.3 146.8 NA NA NA
5v3o 1 Q16531 100.0 0.0 X-RAY
 2017-05-03 CYS A:18 A:18 14.0 0.104 E -154.5 114.9 14.0 0.104 0.0
6dsz 1 Q16531 100.0 0.0 X-RAY
 2018-12-12 CYS A:18 A:18 14.0 0.104 E -151.3 133.9 14.0 0.104 0.0
CYS B:18 B:18 16.0 0.119 E -152.5 135.2 NA NA NA
6pai 1 Q16531 100.0 0.0 X-RAY
 2019-09-18 CYS A:18 A:18 16.0 0.119 E -145.5 142.8 16.0 0.119 0.0 EPE
EPE
HOH
 2.739
6.458
5.764
 N
O
N
 O8
O1S
O
6sj7 2 Q16531 100.0 0.0 EM
 2019-12-18 CYS B:18 B:18 18.0 0.133 E -145.3 144.6 18.0 0.133 0.0
6uml 1 Q16531 100.0 0.0 X-RAY
 2020-04-15 CYS A:18 A:18 19.0 0.141 E -136.7 150.1 19.0 0.141 0.0
6xk9 2 Q16531 100.0 0.0 X-RAY
 2020-12-02 CYS B:18 Y:18 16.0 0.119 E -148.4 145.8 16.0 0.119 0.0
CYS E:18 B:18 20.0 0.148 E -148.6 149.9 NA NA NA
7lps 1 Q16531 100.0 0.0 X-RAY
 2021-06-02 CYS A:18 A:18 12.0 0.089 E -152.9 142.1 12.0 0.089 0.0
CYS D:18 D:18 11.0 0.081 E -152.5 141.9 NA NA NA
CYS G:18 G:18 11.0 0.081 E -152.6 141.5 NA NA NA
CYS J:18 J:18 11.0 0.081 E -152.3 141.4 NA NA NA
7oop 26 Q16531 100.0 0.0 EM
 2021-10-06 CYS Z:18 d:18 12.0 0.089 E -140.2 135.0 12.0 0.089 0.0
6zue 1 Q16531 100.0 0.0 X-RAY
 2021-07-28 CYS A:20 A:18 18.0 0.133 E -149.6 138.3 18.0 0.133 0.0
6zx9 1 Q16531 100.0 0.0 X-RAY
 2021-07-21 CYS A:20 A:18 20.0 0.148 E -147.6 147.8 20.0 0.148 0.0 GOL
HOH
 8.799
2.977
 CB
O
 O2
O
7oo3 20 Q16531 100.0 0.0 EM
 2021-10-06 CYS T:21 d:18 14.0 0.104 E -142.0 140.7 14.0 0.104 0.0
7oob 14 Q16531 100.0 0.0 EM
 2021-10-13 CYS N:21 d:18 12.0 0.089 E -143.0 138.5 12.0 0.089 0.0
7opc 26 Q16531 100.0 0.0 EM
 2021-10-13 CYS Z:21 d:18 12.0 0.089 E -141.2 138.4 12.0 0.089 0.0
7opd 26 Q16531 100.0 0.0 EM
 2021-10-06 CYS Z:21 d:18 12.0 0.089 E -141.2 138.4 12.0 0.089 0.0
4a0l 1 Q16531 100.0 0.0 X-RAY
 2011-12-14 CYS A:22 A:18 20.0 0.148 E -152.3 108.7 20.0 0.148 0.0
CYS C:22 C:18 18.0 0.133 E -152.1 108.8 NA NA NA
6r8y 8 Q16531 100.0 0.0 EM
 2019-06-12 CYS K:22 K:18 13.0 0.096 E -156.7 141.4 13.0 0.096 0.0
6r8z 7 Q16531 100.0 0.0 EM
 2019-06-12 CYS K:41 K:18 15.0 0.111 E -153.8 138.7 15.0 0.111 0.0
6r90 7 Q16531 100.0 0.0 EM
 2019-06-12 CYS K:41 K:18 13.0 0.096 E -155.0 138.1 13.0 0.096 0.0
6r91 7 Q16531 100.0 0.0 EM
 2019-06-12 CYS K:41 K:18 14.0 0.104 E -153.2 139.2 14.0 0.104 0.0
6r92 8 Q16531 100.0 0.0 EM
 2019-06-12 CYS L:41 K:18 13.0 0.096 E -152.9 137.1 13.0 0.096 0.0
4a0k 3 Q16531 100.0 0.0 X-RAY
 2011-12-14 CYS C:37 C:18 17.0 0.126 E -152.1 108.6 17.0 0.126 0.0
4a11 1 Q16531 100.0 0.0 X-RAY
 2011-12-07 CYS A:37 A:18 17.0 0.126 E -145.4 147.1 17.0 0.126 0.0
7okq 1 Q16531 100.0 0.0 EM
 2021-10-13 CYS A:37 A:18 57.0 NA E -153.8 162.3 57.0 NA NA
CYS E:37 E:18 56.0 NA E -153.7 162.3 NA NA NA
CYS I:37 I:18 56.0 NA E -153.8 162.2 NA NA NA
CYS M:37 M:18 57.0 NA E -153.8 162.3 NA NA NA
3ei1 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 CYS A:36 A:18 16.0 0.119 E -146.3 134.0 16.0 0.119 0.0 HOH
 4.684
 N
 O
3ei2 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 CYS A:36 A:18 17.0 0.126 E -152.1 108.8 17.0 0.126 0.0 HOH
 3.761
 N
 O
3ei3 1 Q16531 100.0 0.0 X-RAY
 2009-01-20 CYS A:36 A:18 19.0 0.141 E -148.6 143.0 19.0 0.141 0.0 HOH
 3.058
 N
 O
4ci1 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 CYS A:36 A:18 14.0 0.104 E -153.7 142.2 14.0 0.104 0.0 HOH
 5.669
 N
 O
4ci2 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 CYS A:36 A:18 14.0 0.104 E -157.6 146.5 14.0 0.104 0.0
4ci3 1 Q16531 100.0 0.0 X-RAY
 2014-07-16 CYS A:36 A:18 14.0 0.104 E -153.9 143.8 14.0 0.104 0.0
6fcv 1 Q16531 100.0 0.0 X-RAY
 2019-01-30 CYS A:36 A:18 16.0 0.119 E -139.1 144.4 16.0 0.119 0.0
4tz4 1 Q16531 100.0 0.0 X-RAY
 2014-08-06 CYS A:17 A:18 19.0 0.141 E -157.8 123.5 19.0 0.141 0.0
3i7h 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 15.0 0.111 E -158.1 135.6 15.0 0.111 0.0
3i7k 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 20.0 0.148 E -158.9 144.5 20.0 0.148 0.0
3i7l 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 18.0 0.133 E -166.5 127.1 18.0 0.133 0.0
3i7n 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 15.0 0.111 E -149.6 138.6 15.0 0.111 0.0
3i7o 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 16.0 0.119 E -161.5 160.0 16.0 0.119 0.0
3i7p 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 18.0 0.133 E -155.9 139.9 18.0 0.133 0.0
3i89 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 14.0 0.104 E -166.9 131.8 14.0 0.104 0.0
3i8c 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 19.0 0.141 E -161.9 147.7 19.0 0.141 0.0
3i8e 1 Q16531 99.74 0.0 X-RAY
 2009-12-08 CYS A:21 A:18 17.0 0.126 E -155.3 154.6 17.0 0.126 0.0
CYS B:21 B:18 17.0 0.126 -159.7 162.8 NA NA NA
2b5l 1 13435359 99.74 0.0 X-RAY
 2006-02-28 CYS A:18 A:18 13.0 0.096 E -158.4 120.3 13.0 0.096 0.0
CYS B:18 B:18 15.0 0.111 E -150.5 128.0 NA NA NA
2b5m 1 13435359 99.74 0.0 X-RAY
 2006-02-28 CYS A:18 A:18 15.0 0.111 E -172.4 118.2 15.0 0.111 0.0
2hye 1 Q16531 99.74 0.0 X-RAY
 2006-10-03 CYS A:18 A:18 16.0 0.119 E -154.6 137.6 16.0 0.119 0.0
4a0b 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 CYS A:37 A:18 19.0 0.141 E -138.9 132.7 19.0 0.141 0.0
CYS C:37 C:18 19.0 0.141 E -148.7 130.2 NA NA NA
4a0a 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 CYS A:37 A:18 16.0 0.119 E -143.9 147.5 16.0 0.119 0.0
4a08 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 CYS A:37 A:18 12.0 0.089 E -144.7 133.3 12.0 0.089 0.0 MES
 4.272
 O
 O1
4a09 1 Q16531 99.91 0.0 X-RAY
 2011-11-30 CYS A:37 A:18 24.0 0.178 E -151.5 112.4 24.0 0.178 0.0 HOH
 4.806
 O
 O
4e54 1 Q16531 100.0 0.0 X-RAY
 2012-08-08 CYS A:28 A:18 16.0 0.119 E -150.2 109.9 16.0 0.119 0.0
4e5z 1 Q16531 100.0 0.0 X-RAY
 2012-08-22 CYS A:28 A:18 23.0 0.17 E -149.7 139.9 23.0 0.17 0.0
3ei4 1 Q16531 99.74 0.0 X-RAY
 2009-01-20 CYS A:36 A:18 15.0 0.111 E -134.5 134.5 15.0 0.111 0.0
CYS C:36 C:18 15.0 0.111 E -135.2 134.0 NA NA NA
CYS E:36 E:18 16.0 0.119 E -135.1 134.0 NA NA NA
6ud7 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 CYS B:18 B:18 20.0 0.148 E -131.2 133.5 20.0 0.148 0.0 HOH
 3.135
 N
 O
6ue5 2 Q16531 100.0 0.0 X-RAY
 2019-12-18 CYS B:18 B:18 16.0 0.119 E -140.8 127.3 16.0 0.119 0.0 HOH
 2.692
 O
 O
6td3 1 Q16531 100.0 0.0 X-RAY
 2020-06-17 CYS A:22 A:18 15.0 0.111 E -160.0 125.8 15.0 0.111 0.0
CYS D:22 D:18 15.0 0.111 E -159.9 125.5 NA NA NA
CYS G:22 G:18 15.0 0.111 E -160.0 125.4 NA NA NA
5fqd 1 Q16531 100.0 0.0 X-RAY
 2016-02-24 CYS A:38 A:18 14.0 0.104 E -157.3 134.3 14.0 0.104 0.0 HOH
 9.158
 CB
 O
CYS D:38 D:18 15.0 0.111 E -157.9 133.3 NA NA NA
6h0f 1 ? 100.0 0.0 X-RAY
 2018-11-07 CYS A:38 A:18 13.0 0.096 E -155.4 135.4 13.0 0.096 0.0 HOH
 5.160
 H
 O
CYS D:38 D:18 11.0 0.081 E -155.1 134.9 NA NA NA
CYS G:38 G:18 12.0 0.089 E -155.1 135.3 NA NA NA
CYS J:38 J:18 12.0 0.089 E -155.0 135.3 NA NA NA
6h0g 1 Q16531 100.0 0.0 X-RAY
 2018-11-07 CYS A:38 A:18 11.0 0.081 E -157.0 147.4 11.0 0.081 0.0
CYS D:38 D:18 10.0 0.074 E -152.7 147.0 NA NA NA
6bn7 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 CYS A:46 A:18 12.0 0.089 E -152.4 138.1 12.0 0.089 0.0
6bn8 1 Q16531 100.0 0.0 X-RAY
 2018-06-06 CYS A:46 A:18 13.0 0.096 E -154.1 150.5 13.0 0.096 0.0
6bn9 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 CYS A:46 A:18 11.0 0.081 E -152.7 140.5 11.0 0.081 0.0
6bnb 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 CYS A:46 A:18 7.0 0.052 E -152.2 114.9 7.0 0.052 0.0
6boy 1 Q16531 100.0 0.0 X-RAY
 2018-05-30 CYS A:46 A:18 13.0 0.096 E -154.6 137.7 13.0 0.096 0.0
6q0r 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 CYS A:46 A:18 14.0 0.104 E -153.6 134.8 14.0 0.104 0.0
6q0v 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 CYS A:46 A:18 13.0 0.096 E -151.9 132.1 13.0 0.096 0.0
6q0w 1 Q16531 100.0 0.0 X-RAY
 2019-11-13 CYS A:46 A:18 13.0 0.096 E -151.2 130.4 13.0 0.096 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16531-f1 1 Q16531 100.0 0.0 CYS A:18 A:18 14.0 0.104 E -143.5 145.2