Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 10758905 . A C CCDS8628.1:NM_018048.3:c.416aTt>aGt_NP_060518.1:p.139I>S Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5xjc 38 Q96A72 100.0 3e-108 EM
 2017-07-05 ILE VA:139 v:139 6.0 0.034 H -59.6 -50.6 5.0 0.029 0.005 WA:Q9Y5S9:0.006
5yzg 30 Q96A72 100.0 3e-108 EM
 2018-08-08 ILE GA:139 v:139 6.0 0.034 H -59.6 -50.6 4.0 0.023 0.011 FA:P38919:0.006
HA:Q9Y5S9:0.006
6icz 1 Q96A72 100.0 3e-108 EM
 2019-03-13 ILE A:139 v:137 41.0 NA H -59.7 -50.5 41.0 NA NA
2hyi 2 P61326 98.63 4e-105 X-RAY
 2006-08-15 ILE C:137 A:137 5.0 0.029 H -59.6 -50.6 4.0 0.023 0.006 D:Q9Y5S9:0.006
 HOH
 3.402
 CG2
 O
ILE G:137 G:137 8.0 0.046 H -61.5 -47.4 NA NA NA
2j0q 2 P61326 98.63 4e-105 X-RAY
 2006-08-30 ILE C:137 C:137 15.0 0.086 H -63.4 -22.7 11.0 0.063 0.023 A:P38919:0.023
ILE F:137 F:137 14.0 0.08 H -63.7 -19.9 NA NA NA
2j0s 2 P61326 98.63 4e-105 X-RAY
 2006-09-06 ILE B:137 C:137 18.0 0.103 H -71.7 -29.5 11.0 0.063 0.04 A:P38919:0.04
 HOH
 2.930
 O
 O
2xb2 2 P61326 98.63 4e-105 X-RAY
 2010-05-12 ILE B:137 C:137 17.0 0.097 H -64.9 -12.0 NA NA NA
ILE L:137 Y:137 16.0 0.091 H -64.6 -10.1 9.0 0.051 0.04 K:P38919:0.034
3ex7 1 P61326 98.63 4e-105 X-RAY
 2008-12-09 ILE A:137 A:137 7.0 0.04 H -65.9 -40.8 5.0 0.029 0.011 B:Q9Y5S9:0.011
 HOH
 5.189
 C
 O
ILE E:137 E:137 6.0 0.034 H -56.8 -37.1 NA NA NA
7a5p 34 P61326 98.63 4e-105 EM
 2020-10-14 ILE RA:137 v:139 41.0 NA H -64.5 -43.6 41.0 NA NA
6qdv 6 Q96A72 100.0 6e-105 EM
 2019-02-20 ILE F:135 9:139 6.0 0.034 H -59.6 -50.6 5.0 0.029 0.005
1p27 1 P61326 100.0 2e-104 X-RAY
 2003-08-19 ILE A:136 A:137 2.0 0.011 H -74.5 -43.2 2.0 0.011 0.0 HOH
 6.192
 C
 O
ILE C:136 C:137 2.0 0.011 H -71.5 -44.2 2.0 0.011 0.0 HOH
 7.701
 CD1
 O
1oo0 1 P49028 90.34 3e-96 X-RAY
 2003-05-27 ILE A:138 A:138 2.0 0.011 H -66.8 -49.6 2.0 0.011 0.0 GOL
HOH
 9.545
6.980
 CD1
C
 O2
O
1rk8 2 P49028 90.34 3e-96 X-RAY
 2004-04-13 ILE B:138 B:138 5.0 0.029 H -68.2 -45.2 3.0 0.017 0.012 A:Q9V535:0.011
 HOH
 5.335
 CG2
 O
2x1g 2 P49028 90.34 3e-96 X-RAY
 2010-02-16 ILE B:138 B:138 7.0 0.04 H -61.6 -48.6 7.0 0.04 0.0
ILE D:138 D:138 6.0 0.034 H -61.6 -48.6 NA NA NA
1hl6 2 P49028 90.34 5e-96 X-RAY
 2003-05-08 ILE B:138 B:138 5.0 0.029 H -66.6 -52.8 4.0 0.023 0.006 A:Q9V535:0.006
 HOH
 5.757
 CG2
 O
ILE D:138 D:138 3.0 0.017 H -66.9 -46.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96a72-f1 1 Q96A72 100.0 1e-108 ILE A:139 A:139 1.0 0.006 H -67.0 -44.6
af-p61326-f1 1 P61326 98.63 2e-105 ILE A:137 A:137 1.0 0.006 H -66.9 -46.2