Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 10762495 . C A CCDS8628.1:NM_018048.3:c.199Gat>Tat_NP_060518.1:p.67D>Y Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5xjc 38 Q96A72 100.0 3e-108 EM
 2017-07-05 ASP VA:67 v:67 88.0 0.587 H -56.3 -51.5 88.0 0.587 0.0
5yzg 30 Q96A72 100.0 3e-108 EM
 2018-08-08 ASP GA:67 v:67 88.0 0.587 H -56.3 -51.4 88.0 0.587 0.0
6icz 1 Q96A72 100.0 3e-108 EM
 2019-03-13 ASP A:67 v:65 77.0 NA H -56.3 -51.5 77.0 NA NA
2hyi 2 P61326 98.63 4e-105 X-RAY
 2006-08-15 ASP C:65 A:65 87.0 0.58 H -56.3 -51.4 87.0 0.58 0.0 HOH
 2.618
 OD2
 O
ASP G:65 G:65 84.0 0.56 H -66.7 -48.9 NA NA NA
2j0q 2 P61326 98.63 4e-105 X-RAY
 2006-08-30 ASP C:65 C:65 78.0 0.52 H -54.0 -50.8 78.0 0.52 0.0
ASP F:65 F:65 76.0 0.507 H -52.5 -51.1 NA NA NA
2j0s 2 P61326 98.63 4e-105 X-RAY
 2006-09-06 ASP B:65 C:65 76.0 0.507 H -56.3 -51.2 76.0 0.507 0.0 HOH
 2.623
 OD1
 O
2xb2 2 P61326 98.63 4e-105 X-RAY
 2010-05-12 ASP B:65 C:65 71.0 0.473 H -64.6 -63.1 NA NA NA
ASP L:65 Y:65 66.0 0.44 H -64.0 -63.6 66.0 0.44 0.0
3ex7 1 P61326 98.63 4e-105 X-RAY
 2008-12-09 ASP A:65 A:65 76.0 0.507 H -55.4 -45.2 76.0 0.507 0.0 HOH
 3.342
 O
 O
ASP E:65 E:65 92.0 0.613 H -94.4 2.2 NA NA NA
7a5p 34 P61326 98.63 4e-105 EM
 2020-10-14 ASP RA:65 v:67 75.0 NA H -61.5 -44.6 75.0 NA NA
6qdv 6 Q96A72 100.0 6e-105 EM
 2019-02-20 ASP F:63 9:67 85.0 0.567 H -56.3 -51.5 85.0 0.567 0.0
1p27 1 P61326 100.0 2e-104 X-RAY
 2003-08-19 ASP A:64 A:65 73.0 0.487 H -57.4 -49.3 73.0 0.487 0.0 HOH
 2.737
 OD2
 O
ASP C:64 C:65 102.0 0.68 H -52.7 -53.8 102.0 0.68 0.0 HOH
 2.976
 OD1
 O
1oo0 1 P49028 90.34 3e-96 X-RAY
 2003-05-27 ILE A:66 A:66 82.0 0.469 H -64.1 -44.9 82.0 0.469 0.0 HOH
 3.458
 O
 O
1rk8 2 P49028 90.34 3e-96 X-RAY
 2004-04-13 ILE B:66 B:66 106.0 0.606 H -62.9 -42.0 106.0 0.606 0.0 HOH
 3.043
 CD1
 O
2x1g 2 P49028 90.34 3e-96 X-RAY
 2010-02-16 ILE B:66 B:66 100.0 0.571 H -67.5 -31.3 96.0 0.549 0.022 E:Q9VEC5:0.023
ILE D:66 D:66 99.0 0.566 H -67.5 -31.3 NA NA NA
1hl6 2 P49028 90.34 5e-96 X-RAY
 2003-05-08 ILE B:66 B:66 87.0 0.497 H -57.1 -43.1 87.0 0.497 0.0 HOH
 3.787
 CA
 O
ILE D:66 D:66 103.0 0.589 H -58.4 -44.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96a72-f1 1 Q96A72 100.0 1e-108 ASP A:67 A:67 90.0 0.6 H -60.3 -48.0
af-p61326-f1 1 P61326 98.63 2e-105 ASP A:65 A:65 89.0 0.593 H -59.8 -47.6