Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 10762530 . T A CCDS8628.1:NM_018048.3:c.164cAc>cTc_NP_060518.1:p.55H>L Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5xjc 38 Q96A72 100.0 3e-108 EM
 2017-07-05 HIS VA:55 v:55 115.0 0.59 -58.8 157.3 23.0 0.118 0.472 WA:Q9Y5S9:0.472
5yzg 30 Q96A72 100.0 3e-108 EM
 2018-08-08 HIS GA:55 v:55 115.0 0.59 -58.9 157.3 24.0 0.123 0.467 HA:Q9Y5S9:0.467
6icz 1 Q96A72 100.0 3e-108 EM
 2019-03-13 HIS A:55 v:53 71.0 NA -58.9 157.3 11.0 NA NA B:Q9Y5S9:NA
2hyi 2 P61326 98.63 4e-105 X-RAY
 2006-08-15 HIS C:53 A:53 116.0 0.595 -58.8 157.3 23.0 0.118 0.477 D:Q9Y5S9:0.477
 HOH
 3.186
 NE2
 O
HIS G:53 G:53 133.0 0.682 -65.3 158.0 NA NA NA
2j0q 2 P61326 98.63 4e-105 X-RAY
 2006-08-30 HIS C:53 C:53 130.0 0.667 -79.6 156.2 52.0 0.267 0.4 D:Q9Y5S9:0.4
HIS F:53 F:53 133.0 0.682 -78.1 157.9 NA NA NA
2j0s 2 P61326 98.63 4e-105 X-RAY
 2006-09-06 HIS B:53 C:53 130.0 0.667 -57.3 154.7 43.0 0.221 0.446 C:Q9Y5S9:0.446
 HOH
 2.981
 NE2
 O
2xb2 2 P61326 98.63 4e-105 X-RAY
 2010-05-12 HIS B:53 C:53 109.0 0.559 -77.0 157.7 NA NA NA
HIS L:53 Y:53 112.0 0.574 -75.8 159.1 37.0 0.19 0.384 M:Q9Y5S9:0.385
3ex7 1 P61326 98.63 4e-105 X-RAY
 2008-12-09 HIS A:53 A:53 101.0 0.518 -72.6 154.6 18.0 0.092 0.426 B:Q9Y5S9:0.426
 HOH
 5.412
 CA
 O
HIS E:53 E:53 136.0 0.697 -64.4 156.2 NA NA NA
7a5p 34 P61326 98.63 4e-105 EM
 2020-10-14 HIS RA:53 v:55 73.0 NA -63.8 163.2 18.0 NA NA SA:Q9Y5S9:NA
6qdv 6 Q96A72 100.0 6e-105 EM
 2019-02-20 HIS F:51 9:55 113.0 0.579 -58.8 157.3 24.0 0.123 0.456 E:Q9Y5S9:0.456
1p27 1 P61326 100.0 2e-104 X-RAY
 2003-08-19 HIS A:52 A:53 128.0 0.656 -62.5 150.5 32.0 0.164 0.492 B:Q9Y5S9:0.492
 HOH
 3.759
 CA
 O
HIS C:52 C:53 140.0 0.718 -64.5 151.4 44.0 0.226 0.492 D:Q9Y5S9:0.492
 HOH
 5.905
 ND1
 O
1oo0 1 P49028 90.34 3e-96 X-RAY
 2003-05-27 HIS A:54 A:54 136.0 0.697 -66.4 152.7 40.0 0.205 0.492 B:Q9V535:0.492
 GOL
HOH
 6.021
2.965
 CE1
NE2
 O1
O
1rk8 2 P49028 90.34 3e-96 X-RAY
 2004-04-13 HIS B:54 B:54 122.0 0.626 -64.6 157.9 33.0 0.169 0.457 A:Q9V535:0.456
 HOH
 3.400
 NE2
 O
2x1g 2 P49028 90.34 3e-96 X-RAY
 2010-02-16 HIS B:54 B:54 132.0 0.677 -72.6 155.1 31.0 0.159 0.518 A:Q9V535:0.518
HIS D:54 D:54 130.0 0.667 -72.6 155.1 NA NA NA
1hl6 2 P49028 90.34 5e-96 X-RAY
 2003-05-08 HIS B:54 B:54 133.0 0.682 -67.3 156.1 42.0 0.215 0.467 A:Q9V535:0.467
 HOH
 3.306
 NE2
 O
HIS D:54 D:54 134.0 0.687 -62.8 155.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96a72-f1 1 Q96A72 100.0 1e-108 HIS A:55 A:55 119.0 0.61 -67.9 150.2
af-p61326-f1 1 P61326 98.63 2e-105 HIS A:53 A:53 118.0 0.605 -70.1 152.4