Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr12 10766044 . G A CCDS8628.1:NM_018048.3:c.88Ccg>Tcg_NP_060518.1:p.30P>S Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5xjc 38 Q96A72 100.0 3e-108 EM
 2017-07-05 PRO VA:30 v:30 64.0 0.441 T -48.7 -35.8 64.0 0.441 0.0
5yzg 30 Q96A72 100.0 3e-108 EM
 2018-08-08 PRO GA:30 v:30 61.0 0.421 T -48.8 -35.8 61.0 0.421 0.0
6icz 1 Q96A72 100.0 3e-108 EM
 2019-03-13 PRO A:30 v:28 72.0 NA T -48.7 -35.9 72.0 NA NA
2hyi 2 P61326 98.63 4e-105 X-RAY
 2006-08-15 PRO C:28 A:28 62.0 0.428 T -48.7 -35.9 62.0 0.428 0.0 HOH
 3.902
 CB
 O
PRO G:28 G:28 55.0 0.379 T -55.4 -30.1 NA NA NA
2j0q 2 P61326 98.63 4e-105 X-RAY
 2006-08-30 PRO C:28 C:28 63.0 0.434 T -56.2 -33.2 63.0 0.434 0.0
PRO F:28 F:28 62.0 0.428 T -57.3 -32.4 NA NA NA
2j0s 2 P61326 98.63 4e-105 X-RAY
 2006-09-06 PRO B:28 C:28 84.0 0.579 T -56.3 -24.3 84.0 0.579 0.0 HOH
 6.941
 N
 O
2xb2 2 P61326 98.63 4e-105 X-RAY
 2010-05-12 PRO B:28 C:28 67.0 0.462 T -60.7 -34.5 NA NA NA
PRO L:28 Y:28 76.0 0.524 T -60.5 -32.9 76.0 0.524 0.0
3ex7 1 P61326 98.63 4e-105 X-RAY
 2008-12-09 PRO A:28 A:28 47.0 0.324 T -62.1 -28.6 46.0 0.317 0.007 B:Q9Y5S9:0.007
 HOH
 6.544
 O
 O
PRO E:28 E:28 83.0 0.572 T -54.0 -33.3 NA NA NA
7a5p 34 P61326 98.63 4e-105 EM
 2020-10-14 PRO RA:28 v:30 86.0 0.593 T -55.6 -30.3 86.0 0.593 0.0
6qdv 6 Q96A72 100.0 6e-105 EM
 2019-02-20 PRO F:26 9:30 63.0 0.434 T -48.7 -35.9 63.0 0.434 0.0
1p27 1 P61326 100.0 2e-104 X-RAY
 2003-08-19 PRO A:27 A:28 73.0 0.503 T -59.0 -31.9 73.0 0.503 0.0 HOH
 3.604
 CB
 O
PRO C:27 C:28 79.0 0.545 T -54.9 -28.1 79.0 0.545 0.0 HOH
 5.321
 CD
 O
1oo0 1 P49028 90.34 3e-96 X-RAY
 2003-05-27 PRO A:29 A:29 87.0 0.6 T -55.2 -20.8 66.0 0.455 0.145 B:Q9V535:0.145
 BME
HOH
 4.874
6.346
 CD
O
 S2
O
1rk8 2 P49028 90.34 3e-96 X-RAY
 2004-04-13 PRO B:29 B:29 90.0 0.621 T -54.7 -33.3 90.0 0.621 0.0 HOH
 3.128
 CG
 O
2x1g 2 P49028 90.34 3e-96 X-RAY
 2010-02-16 PRO B:29 B:29 79.0 0.545 T -50.4 -38.5 79.0 0.545 0.0
PRO D:29 D:29 79.0 0.545 T -50.3 -38.6 NA NA NA
1hl6 2 P49028 90.34 5e-96 X-RAY
 2003-05-08 PRO B:29 B:29 62.0 0.428 T -54.2 -35.0 20.0 0.138 0.29 A:Q9V535:0.29
 HOH
 3.202
 CD
 O
PRO D:29 D:29 66.0 0.455 T -43.8 -45.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q96a72-f1 1 Q96A72 100.0 1e-108 PRO A:30 A:30 73.0 0.503 T -58.6 -24.8
af-p61326-f1 1 P61326 98.63 2e-105 PRO A:28 A:28 79.0 0.545 T -56.9 -28.8