Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr12 | 10766118 | . | C | A | CCDS8628.1:NM_018048.3:c.14aGc>aTc_NP_060518.1:p.5S>I | Homo sapiens mago homolog B, exon junction complex core component (MAGOHB), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5xjc | 38 | Q96A72 | 100.0 | 3e-108 |
EM |
2017-07-05 | SER | VA:5 | v:5 | 142.0 | 1.0 | 360.0 | 11.1 | 142.0 | 1.0 | 0.0 | |||||||
| 5yzg | 30 | Q96A72 | 100.0 | 3e-108 |
EM |
2018-08-08 | SER | GA:5 | v:5 | 142.0 | 1.0 | 360.0 | 11.1 | 142.0 | 1.0 | 0.0 | |||||||
| 6icz | 1 | Q96A72 | 100.0 | 3e-108 |
EM |
2019-03-13 | SER | A:5 | v:3 | 141.0 | NA | 360.0 | 11.1 | 141.0 | NA | NA | |||||||
| 2hyi | 2 | P61326 | 98.63 | 4e-105 |
X-RAY |
2006-08-15 | SER | C:3 | A:3 | 139.0 | 1.0 | 360.0 | 11.1 | 139.0 | 1.0 | 0.0 |
HOH |
7.327 |
C |
O |
|||
| SER | G:3 | G:3 | 152.0 | 1.0 | 360.0 | -3.0 | NA | NA | NA | ||||||||||||||
| 2j0q | 2 | P61326 | 98.63 | 4e-105 |
X-RAY |
2006-08-30 | SER | C:3 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| SER | F:3 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 2j0s | 2 | P61326 | 98.63 | 4e-105 |
X-RAY |
2006-09-06 | SER | B:3 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 2xb2 | 2 | P61326 | 98.63 | 4e-105 |
X-RAY |
2010-05-12 | SER | B:3 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| SER | L:3 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 3ex7 | 1 | P61326 | 98.63 | 4e-105 |
X-RAY |
2008-12-09 | SER | A:3 | A:3 | 156.0 | 1.0 | 360.0 | 1.4 | 156.0 | 1.0 | 0.0 |
HOH |
6.843 |
N |
O |
|||
| SER | E:3 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
| 7a5p | 34 | P61326 | 98.63 | 4e-105 |
EM |
2020-10-14 | SER | RA:3 | v:5 | 140.0 | NA | 360.0 | 12.7 | 140.0 | NA | NA | |||||||
| 6qdv | 6 | Q96A72 | 100.0 | 6e-105 |
EM |
2019-02-20 | SER | F:1 | 9:5 | 140.0 | 1.0 | 360.0 | 11.1 | 140.0 | 1.0 | 0.0 | |||||||
| 1p27 | 1 | P61326 | 100.0 | 2e-104 |
X-RAY |
2003-08-19 | SER | A:2 | A:3 | 126.0 | 1.0 | -97.2 | 19.4 | 126.0 | 1.0 | 0.0 |
HOH |
3.394 |
O |
O |
|||
| SER | C:2 | C:3 | 87.0 | 0.757 | -64.1 | -34.7 | 87.0 | 0.757 | 0.0 | ||||||||||||||
| 1oo0 | 1 | P49028 | 90.34 | 3e-96 |
X-RAY |
2003-05-27 | GLU | A:4 | A:4 | 153.0 | 0.805 | 360.0 | 128.2 | 153.0 | 0.805 | 0.0 |
HOH |
4.636 |
OE2 |
O |
|||
| 1rk8 | 2 | P49028 | 90.34 | 3e-96 |
X-RAY |
2004-04-13 | GLU | B:4 | B:4 | 204.0 | 1.0 | 360.0 | 107.6 | 204.0 | 1.0 | 0.0 |
HOH |
2.755 |
O |
O |
|||
| 2x1g | 2 | P49028 | 90.34 | 3e-96 |
X-RAY |
2010-02-16 | GLU | B:4 | B:4 | 96.0 | NA | -102.0 | 14.5 | 96.0 | NA | NA | |||||||
| GLU | D:4 | D:4 | 96.0 | NA | -102.0 | 14.4 | NA | NA | NA | ||||||||||||||
| 1hl6 | 2 | P49028 | 90.34 | 5e-96 |
X-RAY |
2003-05-08 | GLU | B:4 | B:4 | 203.0 | 1.0 | 360.0 | -15.8 | 194.0 | 1.0 | 0.0 |
A:Q9V535:0.047 |
HOH |
4.150 |
O |
O |
||
| GLU | D:4 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q96a72-f1 | 1 | Q96A72 | 100.0 | 1e-108 | SER | A:5 | A:5 | 66.0 | 0.574 | -50.9 | 113.7 | ||
| af-p61326-f1 | 1 | P61326 | 98.63 | 2e-105 | SER | A:3 | A:3 | 62.0 | 0.539 | -58.9 | 129.9 | ||