Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr18 45374908 . C A CCDS11934.1:NM_001003652.3:c.935tGc>tTc_NP_001003652.1:p.312C>F Homo sapiens SMAD family member 2 (SMAD2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1khx 1 Q15796 100.0 1e-169 X-RAY
 2002-02-06 CYS A:72 A:312 6.0 0.044 E -91.3 102.1 6.0 0.044 0.0 HOH
 2.965
 O
 O
6zvq 1 Q15796 100.0 1e-169 X-RAY
 2021-06-09 CYS A:72 A:312 7.0 0.052 E -95.8 112.3 7.0 0.052 0.0 GOL
GOL
TAR
TAR
HOH
 2.922
8.100
8.638
8.731
4.617
 N
O
N
O
SG
 O1
C1
O11
O1
O
6m64 1 Q15796 99.51 5e-152 X-RAY
 2020-11-25 CYS A:53 A:312 5.0 0.037 E -94.1 106.9 5.0 0.037 0.0 HOH
 2.810
 O
 O
CYS C:53 C:312 6.0 0.044 E -94.9 105.8 6.0 0.044 0.0 HOH
 2.857
 O
 O
CYS E:53 E:312 5.0 0.037 E -92.8 106.8 5.0 0.037 0.0 HOH
 2.837
 O
 O
7co1 1 Q15796 99.51 5e-152 X-RAY
 2020-11-25 CYS A:53 A:312 6.0 0.044 -77.2 113.4 6.0 0.044 0.0
CYS C:53 C:312 6.0 0.044 -77.6 114.5 6.0 0.044 0.0
CYS E:53 E:312 5.0 0.037 -76.8 113.8 5.0 0.037 0.0
1mk2 1 P84022 96.6 8e-150 X-RAY
 2002-10-16 CYS A:51 A:269 3.0 0.022 E -73.6 146.5 3.0 0.022 0.0 ACY
 8.222
 N
 CH3
1u7v 1 Q15796 100.0 2e-147 X-RAY
 2004-09-28 CYS A:43 A:312 6.0 0.044 E -76.9 113.9 6.0 0.044 0.0
CYS B:43 C:312 5.0 0.037 E -82.0 111.6 5.0 0.037 0.0
5xod 1 Q15796 100.0 2e-146 X-RAY
 2018-03-28 CYS A:53 A:312 5.0 0.037 E -93.4 113.7 5.0 0.037 0.0 HOH
 2.796
 O
 O
5zoj 1 Q15796 100.0 3e-146 X-RAY
 2018-10-10 CYS A:54 A:312 5.0 0.037 E -87.1 119.7 5.0 0.037 0.0
CYS B:54 B:312 3.0 0.022 E -86.6 120.9 3.0 0.022 0.0
CYS C:54 C:312 5.0 0.037 E -88.0 119.7 5.0 0.037 0.0
1dev 1 Q15796 100.0 7e-146 X-RAY
 2000-01-21 CYS A:52 A:312 8.0 0.059 E -81.4 115.1 8.0 0.059 0.0
CYS C:52 C:312 5.0 0.037 E -89.9 122.6 NA NA NA
1u7f 1 P84022 96.97 2e-144 X-RAY
 2004-09-28 CYS A:43 A:270 6.0 0.044 E -92.2 107.5 6.0 0.044 0.0 HOH
 2.808
 N
 O
CYS C:43 C:270 5.0 0.037 E -89.3 109.6 5.0 0.037 0.0 HOH
 3.204
 O
 O
1mjs 1 P84022 96.95 1e-143 X-RAY
 2002-10-16 CYS A:42 A:269 2.0 0.015 E -93.2 119.1 2.0 0.015 0.0 HOH
 2.622
 O
 O
5xoc 1 P84022 97.46 2e-143 X-RAY
 2018-03-28 CYS A:53 A:270 5.0 0.037 E -89.6 117.4 5.0 0.037 0.0 HOH
 5.272
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q15796-f1 1 Q15796 100.0 0.0 CYS A:312 A:312 4.0 0.03 E -84.3 100.7
af-p84022-f1 1 P84022 83.94 0.0 CYS A:270 A:270 4.0 0.03 E -83.8 96.6