Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 46190822 . C A CCDS33053.1:NM_004597.5:c.346Gcc>Tcc_NP_004588.1:p.116A>S Homo sapiens small nuclear ribonucleoprotein D2 polypeptide (SNRPD2), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1b34 2 P62316 100.0 5e-83 X-RAY
 2000-01-13 ALA B:116 B:116 100.0 0.87 -83.0 137.8 100.0 0.87 0.0
4f7u 2 P62317 100.0 5e-83 X-RAY
 2013-01-30 ALA B:116 NA:NA DO NA DO DO DO NA NA NA
ALA D:116 NA:NA DO NA DO DO DO NA NA NA
4pjo 4 P62316 100.0 5e-83 X-RAY
 2014-12-31 ALA D:116 D:116 142.0 1.0 71.3 360.0 71.0 0.617 0.383 H:P08621:0.617
 HOH
 4.167
 CB
 O
ALA O:116 NA:NA DO NA DO DO DO NA NA NA
ALA Z:116 R:116 158.0 1.0 166.0 360.0 NA NA NA
ALA KA:116 NA:NA DO NA DO DO DO NA NA NA
4v98 2 P62316 100.0 5e-83 X-RAY
 2014-07-09 ALA B:116 AJ:2098 100.0 0.87 -60.7 104.7 75.0 0.652 0.218 F:Q9VVX0:0.217
ALA J:116 AB:2098 107.0 0.93 -67.6 98.1 NA NA NA
ALA R:116 AR:2098 101.0 0.878 -60.1 105.0 NA NA NA
ALA Z:116 AZ:2098 100.0 0.87 -58.5 104.7 NA NA NA
ALA HA:116 Ah:2098 107.0 0.93 -59.6 96.4 NA NA NA
ALA PA:116 Ap:2098 102.0 0.887 -59.5 103.3 NA NA NA
ALA BB:116 Ax:2098 99.0 0.861 -59.4 105.1 NA NA NA
ALA FB:116 BB:2098 99.0 0.861 -61.1 105.7 NA NA NA
ALA NB:116 BJ:2098 106.0 0.922 -47.2 102.5 NA NA NA
ALA VB:116 BR:2098 100.0 0.87 -58.7 104.5 NA NA NA
ALA DC:116 BZ:2098 100.0 0.87 -60.1 104.5 NA NA NA
ALA LC:116 Bh:2098 100.0 0.87 -60.4 105.1 NA NA NA
ALA TC:116 Bp:2098 100.0 0.87 -60.9 105.2 NA NA NA
ALA FD:116 Bx:2098 114.0 0.991 -66.2 87.8 NA NA NA
ALA JD:116 CB:2098 102.0 0.887 -48.7 113.5 NA NA NA
ALA RD:116 CJ:2098 101.0 0.878 -63.2 107.8 NA NA NA
ALA ZD:116 CR:2098 100.0 0.87 -60.7 104.4 NA NA NA
ALA HE:116 CZ:2098 100.0 0.87 -59.0 104.9 NA NA NA
ALA PE:116 Ch:2098 99.0 0.861 -60.4 105.0 NA NA NA
ALA XE:116 Cp:2098 97.0 0.843 -53.4 109.7 NA NA NA
4wzj 4 P62316 100.0 5e-83 X-RAY
 2015-01-14 ALA D:116 D:116 122.0 1.0 -64.5 360.0 122.0 1.0 0.0
ALA K:116 K:116 78.0 0.678 G -62.0 -37.7 NA NA NA
ALA R:116 R:116 120.0 1.0 -67.2 360.0 NA NA NA
ALA Y:116 DD:116 120.0 1.0 -65.8 360.0 NA NA NA
ALA FA:116 KK:116 125.0 1.0 -65.7 360.0 NA NA NA
ALA MA:116 RR:116 122.0 1.0 -65.6 360.0 NA NA NA
ALA TA:116 DDD:116 120.0 1.0 -66.5 360.0 NA NA NA
ALA AB:116 KKK:116 83.0 0.722 T -64.5 -39.3 NA NA NA
ALA HB:116 RRR:116 121.0 1.0 -68.7 360.0 NA NA NA
ALA OB:116 DDDD:116 118.0 1.0 -65.9 360.0 NA NA NA
ALA VB:116 KKKK:116 120.0 1.0 -65.8 360.0 NA NA NA
ALA CC:116 RRRR:116 127.0 1.0 -63.9 360.0 NA NA NA
5mqf 22 P62316 100.0 5e-83 EM
 2017-03-22 ALA Y:116 a:116 88.0 0.765 H -72.6 -35.7 88.0 0.765 0.0
ALA FA:116 h:116 124.0 1.0 -66.5 360.0 124.0 1.0 0.0
5o9z 19 P62316 100.0 5e-83 EM
 2017-08-16 ALA S:116 NA:NA DO NA DO DO DO NA NA NA
ALA Z:116 NA:NA DO NA DO DO DO NA NA NA
ALA TA:116 S:116 NA NA NA NA NA NA NA NA
5xjc 30 P62316 100.0 5e-83 EM
 2017-07-05 ALA DA:116 d:116 121.0 1.0 -64.4 360.0 121.0 1.0 0.0
ALA KA:116 k:116 120.0 1.0 -64.4 360.0 120.0 1.0 0.0
5xjl 3 P62316 100.0 5e-83 X-RAY
 2018-05-02 ALA C:116 B:116 101.0 0.878 -146.2 155.7 51.0 0.443 0.435 A:O14893:0.435
 HOH
 5.066
 O
 O
5xjq 3 P62316 100.0 5e-83 X-RAY
 2018-07-04 ALA C:116 B:116 98.0 0.852 -150.1 140.8 45.0 0.391 0.461 A:O14893:0.461
5xjr 3 P62316 100.0 5e-83 X-RAY
 2018-07-04 ALA C:116 B:116 99.0 0.861 -152.7 139.3 42.0 0.365 0.496 A:O14893:0.496
5xjs 3 P62316 100.0 5e-83 X-RAY
 2018-07-04 ALA C:116 B:116 101.0 0.878 -149.7 148.3 45.0 0.391 0.487 A:O14893:0.487
5yzg 36 P62316 100.0 5e-83 EM
 2018-08-08 ALA MA:116 k:116 120.0 1.0 -64.4 360.0 120.0 1.0 0.0
ALA VA:116 d:116 121.0 1.0 -64.5 360.0 121.0 1.0 0.0
5z56 9 P62316 100.0 5e-83 EM
 2018-09-19 ALA I:116 d:116 127.0 1.0 -64.5 360.0 127.0 1.0 0.0
ALA S:116 k:116 128.0 1.0 -64.4 360.0 128.0 1.0 0.0
5z57 9 P62316 100.0 5e-83 EM
 2018-09-19 ALA I:116 d:116 127.0 1.0 -64.5 360.0 127.0 1.0 0.0
ALA S:116 k:116 128.0 1.0 -64.4 360.0 128.0 1.0 0.0
5z58 9 P62316 100.0 5e-83 EM
 2018-09-19 ALA I:116 d:116 127.0 1.0 -64.5 360.0 127.0 1.0 0.0
ALA S:116 k:116 128.0 1.0 -64.4 360.0 128.0 1.0 0.0
6ah0 4 P62316 100.0 5e-83 EM
 2018-11-14 ALA D:116 NA:NA DO NA DO DO DO NA NA NA
ALA Z:116 k:116 114.0 NA -64.4 360.0 114.0 NA NA
ALA VA:116 NA:NA DO NA DO DO DO NA NA NA
6ahd 15 P62316 100.0 5e-83 EM
 2018-11-14 ALA O:116 c:116 114.0 NA -64.5 360.0 114.0 NA NA
ALA FA:116 k:116 113.0 NA -64.3 360.0 113.0 NA NA
ALA VA:116 NA:NA DO NA DO DO DO NA NA NA
6ff7 39 P62316 100.0 5e-83 EM
 2019-03-13 ALA PA:116 NA:NA DO NA DO DO DO NA NA NA
ALA WA:116 h:116 125.0 1.0 -66.2 360.0 125.0 1.0 0.0
6icz 32 P62316 100.0 5e-83 EM
 2019-03-13 ALA FA:116 k:116 128.0 1.0 -64.4 360.0 128.0 1.0 0.0
ALA PA:116 d:116 125.0 1.0 -64.6 360.0 125.0 1.0 0.0
6id0 23 P62316 100.0 5e-83 EM
 2019-03-13 ALA W:116 d:116 125.0 1.0 -64.6 360.0 125.0 1.0 0.0
ALA IA:116 k:116 124.0 1.0 -64.4 360.0 124.0 1.0 0.0
6id1 22 P62316 100.0 5e-83 EM
 2019-03-13 ALA V:116 d:116 126.0 1.0 -64.6 360.0 126.0 1.0 0.0
ALA KA:116 k:116 124.0 1.0 -64.5 360.0 124.0 1.0 0.0
6qdv 39 P62316 100.0 5e-83 EM
 2019-02-20 ALA MA:116 NA:NA DO NA DO DO DO NA NA NA
ALA PA:116 NA:NA DO NA DO DO DO NA NA NA
6qw6 4 P62316 100.0 5e-83 EM
 2019-04-17 ALA D:116 NA:NA DO NA DO DO DO NA NA NA
ALA P:116 52:116 146.0 1.0 54.5 360.0 146.0 1.0 0.0
6qx9 16 P62316 100.0 5e-83 EM
 2019-04-17 ALA Q:116 NA:NA DO NA DO DO DO NA NA NA
ALA CA:116 NA:NA DO NA DO DO DO NA NA NA
ALA BB:116 52:116 146.0 1.0 54.5 360.0 146.0 1.0 0.0
ALA CB:116 NA:NA DO NA DO DO DO NA NA NA
6y53 12 P62316 100.0 5e-83 EM
 2020-06-17 ALA L:116 h:116 115.0 NA -92.1 360.0 115.0 NA NA
6y5q 17 P62316 100.0 5e-83 EM
 2020-06-17 ALA Q:116 h:116 115.0 NA -92.1 360.0 115.0 NA NA
7a5p 24 P62316 100.0 5e-83 EM
 2020-10-14 ALA AA:116 d:116 126.0 1.0 -71.3 360.0 126.0 1.0 0.0
ALA EA:116 h:116 118.0 1.0 -66.2 360.0 51.0 0.443 0.557 E:Q6P2Q9:0.583
7abg 43 P62316 100.0 5e-83 EM
 2020-12-23 ALA QA:116 NA:NA DO NA DO DO DO NA NA NA
ALA ZA:116 NA:NA DO NA DO DO DO NA NA NA
7abi 32 P62316 100.0 5e-83 EM
 2021-02-10 ALA FA:116 NA:NA DO NA DO DO DO NA NA NA
ALA ZA:116 NA:NA DO NA DO DO DO NA NA NA
7b0y 19 P62316 100.0 5e-83 EM
 2021-01-13 ALA S:116 NA:NA DO NA DO DO DO NA NA NA
7dvq 9 P62316 100.0 5e-83 EM
 2021-03-31 ALA I:116 d:116 118.0 1.0 -71.9 360.0 118.0 1.0 0.0
ALA S:116 k:116 120.0 1.0 -66.2 360.0 120.0 1.0 0.0
5xjt 3 P62316 99.15 4e-82 X-RAY
 2018-07-04 ALA C:116 B:116 105.0 0.913 -151.3 170.4 43.0 0.374 0.539 A:O14893:0.539
5xju 3 P62316 99.15 4e-82 X-RAY
 2018-07-04 ALA C:116 B:116 100.0 0.87 -164.5 139.8 45.0 0.391 0.479 A:O14893:0.478

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p62316-f1 1 P62316 100.0 2e-83 ALA A:116 A:116 63.0 0.548 T -75.5 -7.7