Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 54783253 | . | T | A | CCDS12886.1:NM_005874.3:c.605aAc>aTc_NP_005865.2:p.202N>I | Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 (LILRB2), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6aed | 1 | Q8N423 | 99.24 | 0.0 |
X-RAY |
2019-07-31 | ASN | A:179 | A:180 | 139.0 | 0.869 | T | -73.1 | -3.0 | 139.0 | 0.869 | 0.0 | ||||||
6zdx | 2 | A0A0G2JQ46 | 80.15 | 0.0 |
X-RAY |
2020-07-22 | ASN | B:211 | B:180 | 147.0 | 0.919 | T | -73.3 | -5.3 | 76.0 | 0.475 | 0.444 |
A:Q8I4N9:0.444 |
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6aee | 4 | A0A0G2JQ44 | 80.61 | 0.0 |
X-RAY |
2019-07-31 | ASN | G:179 | G:180 | 149.0 | 0.931 | T | -70.9 | -13.0 | 118.0 | 0.738 | 0.193 |
B:P61769:0.175 A:P17693:0.019 |
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ASN | H:179 | H:180 | 144.0 | 0.9 | T | -79.0 | -27.0 | NA | NA | NA | |||||||||||||
6bcs | 1 | A0A0G2JNQ7 | 99.49 | 3e-141 |
X-RAY |
2018-09-05 | ASN | A:180 | A:180 | 148.0 | 0.925 | T | -82.5 | -7.5 | 148.0 | 0.925 | 0.0 |
BEN BEN DMS HOH |
9.239 9.277 8.869 4.781 |
N N C N |
N1 C4 O O |
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2gw5 | 1 | Q8N423 | 99.49 | 5e-141 |
X-RAY |
2006-06-20 | ASN | A:179 | A:180 | 155.0 | 0.969 | T | -79.0 | -6.0 | 155.0 | 0.969 | 0.0 |
HOH |
3.367 |
OD1 |
O |
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2dyp | 4 | Q8N423 | 98.98 | 3e-139 |
X-RAY |
2006-11-07 | ASN | D:179 | D:179 | 149.0 | 0.931 | T | -74.5 | -6.9 | 113.0 | 0.706 | 0.225 |
B:P61769:0.225 |
HOH |
5.070 |
O |
O |
|
1ugn | 1 | Q8NHL6 | 81.31 | 7e-105 |
X-RAY |
2004-08-10 | ASN | A:180 | A:180 | 147.0 | 0.919 | T | -75.7 | -15.1 | 147.0 | 0.919 | 0.0 |
HOH |
3.610 |
CB |
O |
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3d2u | 3 | Q8NHL6 | 80.81 | 3e-104 |
X-RAY |
2008-07-08 | ASN | C:180 | D:180 | 144.0 | 0.9 | T | -84.7 | -18.8 | 135.0 | 0.844 | 0.056 |
B:P61769:0.056 |
HOH |
2.986 |
OD1 |
O |
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ASN | F:180 | H:180 | 137.0 | 0.856 | T | -79.7 | -17.9 | NA | NA | NA | |||||||||||||
6k60 | 4 | A0A0G2JQ44 | 81.12 | 6e-104 |
X-RAY |
2019-11-27 | ASN | D:181 | D:180 | 130.0 | 0.812 | T | -74.9 | -9.3 | 122.0 | 0.762 | 0.05 |
B:P61769:0.05 |
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ASN | H:181 | H:180 | 139.0 | 0.869 | T | -76.1 | -27.7 | NA | NA | NA | |||||||||||||
1g0x | 1 | Q8NHL6 | 81.12 | 1e-103 |
X-RAY |
2001-01-17 | ASN | A:179 | A:180 | 137.0 | 0.856 | T | -74.3 | -18.0 | 137.0 | 0.856 | 0.0 |
HOH |
3.283 |
CB |
O |
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1p7q | 4 | Q8NHL6 | 81.12 | 1e-103 |
X-RAY |
2003-10-14 | ASN | D:179 | D:180 | 135.0 | 0.844 | T | -85.1 | 34.5 | 134.0 | 0.838 | 0.006 |
B:P61769:0.006 |
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1ufu | 1 | Q8NHL6 | 81.12 | 1e-103 |
X-RAY |
2004-08-10 | ASN | A:179 | A:180 | 143.0 | 0.894 | T | -85.1 | 4.2 | 143.0 | 0.894 | 0.0 | ||||||
4no0 | 4 | Q8NHL6 | 81.54 | 2e-103 |
X-RAY |
2014-11-19 | ASN | D:177 | D:180 | 141.0 | 0.881 | T | -72.7 | -18.6 | 140.0 | 0.875 | 0.006 |
B:P61769:0.006 |
HOH |
5.552 |
O |
O |
|
6ewa | 4 | D9IDM8 | 81.54 | 2e-103 |
X-RAY |
2018-11-07 | ASN | D:177 | D:180 | 142.0 | 0.887 | T | -71.9 | -28.1 | 131.0 | 0.819 | 0.068 |
B:P61769:0.069 |
HOH |
6.218 |
C |
O |
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ASN | H:177 | H:180 | 138.0 | 0.863 | T | -72.9 | -17.1 | NA | NA | NA | |||||||||||||
6ewc | 4 | A0A0G2JQ44 | 81.54 | 2e-103 |
X-RAY |
2018-11-07 | ASN | D:177 | D:180 | 138.0 | 0.863 | T | -85.2 | 0.6 | 138.0 | 0.863 | 0.0 | ||||||
ASN | H:177 | H:180 | 140.0 | 0.875 | T | -87.7 | 3.4 | NA | NA | NA | |||||||||||||
6ewo | 4 | D9IDM8 | 81.54 | 2e-103 |
X-RAY |
2018-11-07 | ASN | D:177 | D:180 | 138.0 | 0.863 | T | -69.5 | -14.9 | 138.0 | 0.863 | 0.0 |
HOH |
5.181 |
O |
O |
||
ASN | H:177 | H:180 | 139.0 | 0.869 | T | -71.7 | -15.6 | NA | NA | NA | |||||||||||||
1vdg | 1 | Q8NHL6 | 80.1 | 3e-102 |
X-RAY |
2005-08-02 | ASN | A:180 | A:180 | 147.0 | 0.919 | T | -59.9 | -26.4 | 147.0 | 0.919 | 0.0 |
HOH |
5.048 |
O |
O |
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ASN | B:180 | B:180 | 144.0 | 0.9 | T | -85.2 | 10.7 | 144.0 | 0.9 | 0.0 |
HOH |
6.423 |
ND2 |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q8n423-f1 | 1 | Q8N423 | 100.0 | 0.0 | ASN | A:202 | A:202 | 143.0 | 0.894 | T | -76.4 | -21.4 | |
af-o75019-f1 | 1 | O75019 | 84.62 | 0.0 | ASN | A:203 | A:203 | 143.0 | 0.894 | T | -77.7 | -18.5 | |
af-q8n6c8-f1 | 1 | Q8N6C8 | 81.12 | 0.0 | ARG | A:203 | A:203 | 198.0 | 0.88 | T | -73.7 | -20.9 |