Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 54783253 . T A CCDS12886.1:NM_005874.3:c.605aAc>aTc_NP_005865.2:p.202N>I Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 (LILRB2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aed 1 Q8N423 99.24 0.0 X-RAY
2019-07-31 ASN A:179 A:180 139.0 0.869 T -73.1 -3.0 139.0 0.869 0.0
6zdx 2 A0A0G2JQ46 80.15 0.0 X-RAY
2020-07-22 ASN B:211 B:180 147.0 0.919 T -73.3 -5.3 76.0 0.475 0.444 A:Q8I4N9:0.444
6aee 4 A0A0G2JQ44 80.61 0.0 X-RAY
2019-07-31 ASN G:179 G:180 149.0 0.931 T -70.9 -13.0 118.0 0.738 0.193 B:P61769:0.175
A:P17693:0.019
ASN H:179 H:180 144.0 0.9 T -79.0 -27.0 NA NA NA
6bcs 1 A0A0G2JNQ7 99.49 3e-141 X-RAY
2018-09-05 ASN A:180 A:180 148.0 0.925 T -82.5 -7.5 148.0 0.925 0.0 BEN
BEN
DMS
HOH
9.239
9.277
8.869
4.781
N
N
C
N
N1
C4
O
O
2gw5 1 Q8N423 99.49 5e-141 X-RAY
2006-06-20 ASN A:179 A:180 155.0 0.969 T -79.0 -6.0 155.0 0.969 0.0 HOH
3.367
OD1
O
2dyp 4 Q8N423 98.98 3e-139 X-RAY
2006-11-07 ASN D:179 D:179 149.0 0.931 T -74.5 -6.9 113.0 0.706 0.225 B:P61769:0.225
HOH
5.070
O
O
1ugn 1 Q8NHL6 81.31 7e-105 X-RAY
2004-08-10 ASN A:180 A:180 147.0 0.919 T -75.7 -15.1 147.0 0.919 0.0 HOH
3.610
CB
O
3d2u 3 Q8NHL6 80.81 3e-104 X-RAY
2008-07-08 ASN C:180 D:180 144.0 0.9 T -84.7 -18.8 135.0 0.844 0.056 B:P61769:0.056
HOH
2.986
OD1
O
ASN F:180 H:180 137.0 0.856 T -79.7 -17.9 NA NA NA
6k60 4 A0A0G2JQ44 81.12 6e-104 X-RAY
2019-11-27 ASN D:181 D:180 130.0 0.812 T -74.9 -9.3 122.0 0.762 0.05 B:P61769:0.05
ASN H:181 H:180 139.0 0.869 T -76.1 -27.7 NA NA NA
1g0x 1 Q8NHL6 81.12 1e-103 X-RAY
2001-01-17 ASN A:179 A:180 137.0 0.856 T -74.3 -18.0 137.0 0.856 0.0 HOH
3.283
CB
O
1p7q 4 Q8NHL6 81.12 1e-103 X-RAY
2003-10-14 ASN D:179 D:180 135.0 0.844 T -85.1 34.5 134.0 0.838 0.006 B:P61769:0.006
1ufu 1 Q8NHL6 81.12 1e-103 X-RAY
2004-08-10 ASN A:179 A:180 143.0 0.894 T -85.1 4.2 143.0 0.894 0.0
4no0 4 Q8NHL6 81.54 2e-103 X-RAY
2014-11-19 ASN D:177 D:180 141.0 0.881 T -72.7 -18.6 140.0 0.875 0.006 B:P61769:0.006
HOH
5.552
O
O
6ewa 4 D9IDM8 81.54 2e-103 X-RAY
2018-11-07 ASN D:177 D:180 142.0 0.887 T -71.9 -28.1 131.0 0.819 0.068 B:P61769:0.069
HOH
6.218
C
O
ASN H:177 H:180 138.0 0.863 T -72.9 -17.1 NA NA NA
6ewc 4 A0A0G2JQ44 81.54 2e-103 X-RAY
2018-11-07 ASN D:177 D:180 138.0 0.863 T -85.2 0.6 138.0 0.863 0.0
ASN H:177 H:180 140.0 0.875 T -87.7 3.4 NA NA NA
6ewo 4 D9IDM8 81.54 2e-103 X-RAY
2018-11-07 ASN D:177 D:180 138.0 0.863 T -69.5 -14.9 138.0 0.863 0.0 HOH
5.181
O
O
ASN H:177 H:180 139.0 0.869 T -71.7 -15.6 NA NA NA
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
2005-08-02 ASN A:180 A:180 147.0 0.919 T -59.9 -26.4 147.0 0.919 0.0 HOH
5.048
O
O
ASN B:180 B:180 144.0 0.9 T -85.2 10.7 144.0 0.9 0.0 HOH
6.423
ND2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n423-f1 1 Q8N423 100.0 0.0 ASN A:202 A:202 143.0 0.894 T -76.4 -21.4
af-o75019-f1 1 O75019 84.62 0.0 ASN A:203 A:203 143.0 0.894 T -77.7 -18.5
af-q8n6c8-f1 1 Q8N6C8 81.12 0.0 ARG A:203 A:203 198.0 0.88 T -73.7 -20.9