Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 54783409 . A C CCDS12886.1:NM_005874.3:c.449tTt>tGt_NP_005865.2:p.150F>C Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 (LILRB2), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aed 1 Q8N423 99.24 0.0 X-RAY
 2019-07-31 PHE A:127 A:128 19.0 0.09 E -109.0 158.9 19.0 0.09 0.0
6zdx 2 A0A0G2JQ46 80.15 0.0 X-RAY
 2020-07-22 PHE B:159 B:128 17.0 0.081 -138.0 139.9 4.0 0.019 0.062 A:Q8I4N9:0.062
6aee 4 A0A0G2JQ44 80.61 0.0 X-RAY
 2019-07-31 PHE G:127 G:128 14.0 0.067 -101.0 162.9 11.0 0.052 0.015 B:P61769:0.014
PHE H:127 H:128 15.0 0.071 -91.0 173.0 NA NA NA
6bcs 1 A0A0G2JNQ7 99.49 3e-141 X-RAY
 2018-09-05 PHE A:128 A:128 16.0 0.076 E -116.3 159.8 16.0 0.076 0.0 BEN
DMS
HOH
 3.460
9.113
3.583
 CZ
CE1
CE2
 C6
C1
O
2gw5 1 Q8N423 99.49 5e-141 X-RAY
 2006-06-20 PHE A:127 A:128 16.0 0.076 E -113.0 149.2 16.0 0.076 0.0 HOH
 2.908
 O
 O
2dyp 4 Q8N423 98.98 3e-139 X-RAY
 2006-11-07 PHE D:127 D:127 3.0 0.014 -70.9 147.7 2.0 0.01 0.004 B:P61769:0.005
 HOH
 4.924
 N
 O
1ugn 1 Q8NHL6 81.31 7e-105 X-RAY
 2004-08-10 PHE A:128 A:128 25.0 0.119 -141.6 148.4 25.0 0.119 0.0 HOH
 3.756
 CA
 O
3d2u 3 Q8NHL6 80.81 3e-104 X-RAY
 2008-07-08 PHE C:128 D:128 21.0 0.1 -135.1 146.6 11.0 0.052 0.048 B:P61769:0.048
 HOH
 3.756
 CA
 O
PHE F:128 H:128 33.0 0.157 -145.1 148.8 NA NA NA
6k60 4 A0A0G2JQ44 81.12 6e-104 X-RAY
 2019-11-27 PHE D:129 D:128 18.0 0.086 -129.8 137.9 8.0 0.038 0.048 B:P61769:0.048
PHE H:129 H:128 28.0 0.133 -138.6 131.0 NA NA NA
1g0x 1 Q8NHL6 81.12 1e-103 X-RAY
 2001-01-17 PHE A:127 A:128 22.0 0.105 -145.1 136.3 22.0 0.105 0.0 HOH
 2.635
 O
 O
1p7q 4 Q8NHL6 81.12 1e-103 X-RAY
 2003-10-14 PHE D:127 D:128 19.0 0.09 -142.2 163.8 18.0 0.086 0.004 B:P61769:0.005
1ufu 1 Q8NHL6 81.12 1e-103 X-RAY
 2004-08-10 PHE A:127 A:128 25.0 0.119 -136.3 135.4 25.0 0.119 0.0
4no0 4 Q8NHL6 81.54 2e-103 X-RAY
 2014-11-19 PHE D:125 D:128 20.0 0.095 -152.3 164.0 9.0 0.043 0.052 B:P61769:0.052
 HOH
 4.891
 CE2
 O
6ewa 4 D9IDM8 81.54 2e-103 X-RAY
 2018-11-07 PHE D:125 D:128 18.0 0.086 -141.1 150.1 10.0 0.048 0.038 B:P61769:0.038
 HOH
 4.579
 CE2
 O
PHE H:125 H:128 20.0 0.095 -146.0 149.1 NA NA NA
6ewc 4 A0A0G2JQ44 81.54 2e-103 X-RAY
 2018-11-07 PHE D:125 D:128 21.0 0.1 -142.6 157.9 11.0 0.052 0.048 B:P61769:0.048
PHE H:125 H:128 22.0 0.105 -143.1 158.9 NA NA NA
6ewo 4 D9IDM8 81.54 2e-103 X-RAY
 2018-11-07 PHE D:125 D:128 20.0 0.095 -142.0 151.9 11.0 0.052 0.043 B:P61769:0.043
 HOH
 3.990
 CE1
 O
PHE H:125 H:128 21.0 0.1 -143.6 153.9 NA NA NA
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
 2005-08-02 PHE A:128 A:128 29.0 0.138 -151.6 149.7 29.0 0.138 0.0 HOH
 6.395
 O
 O
PHE B:128 B:128 25.0 0.119 -146.2 140.4 25.0 0.119 0.0 HOH
 4.326
 CZ
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n423-f1 1 Q8N423 100.0 0.0 PHE A:150 A:150 8.0 0.038 E -102.5 157.2
af-o75019-f1 1 O75019 84.62 0.0 PHE A:151 A:151 14.0 0.067 E -118.0 158.3
af-q8n6c8-f1 1 Q8N6C8 81.12 0.0 PHE A:151 A:151 6.0 0.029 E -119.9 151.4