Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 54783882 . G A CCDS12886.1:NM_005874.3:c.119aCc>aTc_NP_005865.2:p.40T>I Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 (LILRB2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aed 1 Q8N423 99.24 0.0 X-RAY
2019-07-31 THR A:17 A:17 64.0 0.457 E -65.1 150.9 64.0 0.457 0.0
6zdx 2 A0A0G2JQ46 80.15 0.0 X-RAY
2020-07-22 THR B:48 B:17 72.0 0.514 E -78.4 153.5 72.0 0.514 0.0
6aee 4 A0A0G2JQ44 80.61 0.0 X-RAY
2019-07-31 THR G:16 G:17 71.0 0.507 E -69.0 149.0 71.0 0.507 0.0
THR H:16 H:17 62.0 0.443 E -75.0 159.0 NA NA NA
6bcs 1 A0A0G2JNQ7 99.49 3e-141 X-RAY
2018-09-05 THR A:18 A:17 75.0 0.536 E -75.3 144.5 75.0 0.536 0.0 BEN
CL
DMS
HOH
9.845
8.045
9.933
2.840
N
C
C
N
C6
CL
C2
O
2gw5 1 Q8N423 99.49 5e-141 X-RAY
2006-06-20 THR A:17 A:17 88.0 0.629 E -71.2 144.4 88.0 0.629 0.0 HOH
3.246
N
O
2dyp 4 Q8N423 98.98 3e-139 X-RAY
2006-11-07 THR D:17 D:17 75.0 0.536 E -79.7 140.7 75.0 0.536 0.0 HOH
6.569
O
O
1ugn 1 Q8NHL6 81.31 7e-105 X-RAY
2004-08-10 THR A:17 A:17 75.0 0.536 E -76.0 139.3 75.0 0.536 0.0 HOH
3.110
N
O
3d2u 3 Q8NHL6 80.81 3e-104 X-RAY
2008-07-08 THR C:17 D:17 71.0 0.507 E -70.3 136.5 71.0 0.507 0.0 HOH
3.026
OG1
O
THR F:17 H:17 73.0 0.521 E -74.6 133.9 NA NA NA
6k60 4 A0A0G2JQ44 81.12 6e-104 X-RAY
2019-11-27 THR D:18 D:17 64.0 0.457 E -89.9 155.3 63.0 0.45 0.007 B:P61769:0.007
THR H:18 H:17 79.0 0.564 E -81.7 160.1 NA NA NA
1g0x 1 Q8NHL6 81.12 1e-103 X-RAY
2001-01-17 THR A:16 A:17 59.0 0.421 E -71.3 137.3 59.0 0.421 0.0 HOH
2.899
OG1
O
1p7q 4 Q8NHL6 81.12 1e-103 X-RAY
2003-10-14 THR D:16 D:17 63.0 0.45 E -79.2 126.3 63.0 0.45 0.0
1ufu 1 Q8NHL6 81.12 1e-103 X-RAY
2004-08-10 THR A:16 A:17 69.0 0.493 E -77.7 141.5 69.0 0.493 0.0
4no0 4 Q8NHL6 81.54 2e-103 X-RAY
2014-11-19 THR D:14 D:17 74.0 0.529 E -72.6 149.7 74.0 0.529 0.0 HOH
3.684
CG2
O
6ewa 4 D9IDM8 81.54 2e-103 X-RAY
2018-11-07 THR D:14 D:17 80.0 0.571 E -77.0 145.3 80.0 0.571 0.0
THR H:14 H:17 75.0 0.536 E -75.7 136.3 NA NA NA
6ewc 4 A0A0G2JQ44 81.54 2e-103 X-RAY
2018-11-07 THR D:14 D:17 79.0 0.564 E -67.8 142.5 79.0 0.564 0.0
THR H:14 H:17 78.0 0.557 E -68.3 143.0 NA NA NA
6ewo 4 D9IDM8 81.54 2e-103 X-RAY
2018-11-07 THR D:14 D:17 68.0 0.486 E -72.0 147.0 68.0 0.486 0.0 HOH
5.862
CB
O
THR H:14 H:17 79.0 0.564 E -70.6 136.2 NA NA NA
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
2005-08-02 THR A:17 A:17 78.0 0.557 E -61.1 137.3 78.0 0.557 0.0 HOH
6.635
N
O
THR B:17 B:17 76.0 0.543 E -63.0 143.5 76.0 0.543 0.0 HOH
3.430
CG2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n423-f1 1 Q8N423 100.0 0.0 THR A:40 A:40 71.0 0.507 E -73.5 143.9
af-o75019-f1 1 O75019 84.62 0.0 THR A:40 A:40 73.0 0.521 E -72.6 141.3
af-q8n6c8-f1 1 Q8N6C8 81.12 0.0 THR A:40 A:40 69.0 0.493 E -72.0 137.5