Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 54803556 | . | A | C | CCDS12887.1:NM_006865.3:c.268Tgg>Ggg_NP_006856.3:p.90W>G | Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 (LILRA3), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6zdx | 2 | A0A0G2JQ46 | 85.71 | 0.0 |
X-RAY |
2020-07-22 | TRP | B:98 | B:67 | 143.0 | 0.561 | T | -52.6 | -22.0 | 52.0 | 0.204 | 0.357 |
A:Q8I4N9:0.357 |
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6aee | 4 | A0A0G2JQ44 | 86.22 | 0.0 |
X-RAY |
2019-07-31 | TRP | G:66 | G:67 | 72.0 | 0.282 | T | -70.9 | -23.0 | 43.0 | 0.169 | 0.113 |
B:P61769:0.114 |
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TRP | H:66 | H:67 | 72.0 | 0.282 | G | -67.0 | -17.0 | NA | NA | NA | |||||||||||||
6aed | 1 | Q8N423 | 81.36 | 0.0 |
X-RAY |
2019-07-31 | TRP | A:67 | A:67 | 168.0 | 0.659 | T | -88.5 | 21.3 | 168.0 | 0.659 | 0.0 | ||||||
3d2u | 3 | Q8NHL6 | 88.38 | 3e-121 |
X-RAY |
2008-07-08 | TRP | C:67 | D:67 | 68.0 | 0.267 | G | -60.4 | -35.8 | 24.0 | 0.094 | 0.173 |
B:P61769:0.173 |
HOH |
2.720 |
O |
O |
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TRP | F:67 | H:67 | 83.0 | 0.325 | G | -56.1 | -35.4 | NA | NA | NA | |||||||||||||
6k60 | 4 | A0A0G2JQ44 | 88.78 | 5e-121 |
X-RAY |
2019-11-27 | TRP | D:68 | D:67 | 127.0 | 0.498 | G | -62.0 | -20.5 | 60.0 | 0.235 | 0.263 |
B:P61769:0.263 |
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TRP | H:68 | H:67 | 129.0 | 0.506 | G | -57.4 | -34.6 | NA | NA | NA | |||||||||||||
1g0x | 1 | Q8NHL6 | 88.78 | 9e-121 |
X-RAY |
2001-01-17 | TRP | A:66 | A:67 | 62.0 | 0.243 | G | -53.8 | -36.3 | 62.0 | 0.243 | 0.0 |
HOH |
2.839 |
O |
O |
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1p7q | 4 | Q8NHL6 | 88.78 | 9e-121 |
X-RAY |
2003-10-14 | TRP | D:66 | D:67 | 126.0 | 0.494 | T | -41.5 | -33.7 | 46.0 | 0.18 | 0.314 |
B:P61769:0.314 |
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1ufu | 1 | Q8NHL6 | 88.78 | 9e-121 |
X-RAY |
2004-08-10 | TRP | A:66 | A:67 | 98.0 | 0.384 | T | -65.9 | -11.6 | 98.0 | 0.384 | 0.0 | ||||||
1ugn | 1 | Q8NHL6 | 87.88 | 2e-120 |
X-RAY |
2004-08-10 | TRP | A:67 | A:67 | 112.0 | 0.439 | G | -54.8 | -33.2 | 112.0 | 0.439 | 0.0 |
HOH |
2.903 |
N |
O |
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4no0 | 4 | Q8NHL6 | 88.72 | 2e-120 |
X-RAY |
2014-11-19 | TRP | D:64 | D:67 | 142.0 | 0.557 | G | -61.5 | -30.1 | 63.0 | 0.247 | 0.31 |
B:P61769:0.31 |
HOH |
4.727 |
CZ3 |
O |
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6ewa | 4 | D9IDM8 | 88.72 | 2e-120 |
X-RAY |
2018-11-07 | TRP | D:64 | D:67 | 129.0 | 0.506 | G | -58.9 | -29.4 | 49.0 | 0.192 | 0.314 |
B:P61769:0.314 |
HOH |
6.939 |
CH2 |
O |
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TRP | H:64 | H:67 | 124.0 | 0.486 | G | -57.4 | -28.8 | NA | NA | NA | |||||||||||||
6ewc | 4 | A0A0G2JQ44 | 88.72 | 2e-120 |
X-RAY |
2018-11-07 | TRP | D:64 | D:67 | 133.0 | 0.522 | G | -56.2 | -22.6 | 57.0 | 0.224 | 0.298 |
B:P61769:0.298 |
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TRP | H:64 | H:67 | 133.0 | 0.522 | G | -56.8 | -22.5 | NA | NA | NA | |||||||||||||
6ewo | 4 | D9IDM8 | 88.72 | 2e-120 |
X-RAY |
2018-11-07 | TRP | D:64 | D:67 | 130.0 | 0.51 | G | -50.6 | -30.3 | 50.0 | 0.196 | 0.314 |
B:P61769:0.314 |
HOH |
3.818 |
CD1 |
O |
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TRP | H:64 | H:67 | 136.0 | 0.533 | G | -59.7 | -27.8 | NA | NA | NA | |||||||||||||
1vdg | 1 | Q8NHL6 | 88.27 | 3e-120 |
X-RAY |
2005-08-02 | TRP | A:67 | A:67 | 79.0 | 0.31 | G | -49.2 | -31.2 | 79.0 | 0.31 | 0.0 |
HOH |
3.842 |
CG |
O |
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TRP | B:67 | B:67 | 80.0 | 0.314 | G | -57.0 | -44.6 | 80.0 | 0.314 | 0.0 |
HOH |
3.045 |
CD1 |
O |
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5knm | 3 | Q8NHL6 | 87.88 | 3e-120 |
X-RAY |
2017-06-14 | TRP | C:136 | D:67 | 168.0 | 0.659 | G | -70.9 | -21.4 | 82.0 | 0.322 | 0.337 |
B:P61769:0.337 |
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2otp | 1 | Q8N149 | 83.84 | 4e-112 |
X-RAY |
2008-02-19 | TRP | A:66 | A:66 | 125.0 | 0.49 | S | -74.4 | -34.7 | 108.0 | 0.424 | 0.066 |
B:Q8N149:0.067 |
HOH |
5.939 |
O |
O |
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TRP | B:66 | B:66 | 98.0 | 0.384 | G | -48.2 | -47.6 | 82.0 | 0.322 | 0.062 |
A:Q8N149:0.063 |
HOH |
5.954 |
O |
O |
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2gw5 | 1 | Q8N423 | 80.3 | 5e-106 |
X-RAY |
2006-06-20 | TRP | A:67 | A:67 | 158.0 | 0.62 | T | -24.3 | -48.2 | 158.0 | 0.62 | 0.0 |
HOH |
4.237 |
CZ2 |
O |
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6bcs | 1 | A0A0G2JNQ7 | 80.3 | 6e-106 |
X-RAY |
2018-09-05 | TRP | A:68 | A:67 | 146.0 | 0.573 | G | -57.1 | -28.9 | 146.0 | 0.573 | 0.0 |
CL DMS HOH |
3.194 3.889 4.876 |
N CB CZ2 |
CL O O |
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2dyp | 4 | Q8N423 | 80.2 | 2e-105 |
X-RAY |
2006-11-07 | TRP | D:67 | D:67 | 96.0 | 0.376 | G | -34.5 | -50.4 | 27.0 | 0.106 | 0.27 |
B:P61769:0.271 |
HOH |
3.056 |
NE1 |
O |
|
3q2c | 1 | Q8N6C8 | 98.97 | 3e-63 |
X-RAY |
2011-07-13 | TRP | A:67 | A:67 | 145.0 | 0.569 | G | -62.4 | -39.9 | 145.0 | 0.569 | 0.0 |
HOH |
2.986 |
CD1 |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q8n6c8-f1 | 1 | Q8N6C8 | 100.0 | 0.0 | TRP | A:90 | A:90 | 152.0 | 0.596 | G | -54.7 | -23.5 | |
af-o75019-f1 | 1 | O75019 | 85.39 | 0.0 | TRP | A:90 | A:90 | 143.0 | 0.561 | G | -54.0 | -28.7 | |
af-q8nhl6-f1 | 1 | Q8NHL6 | 86.4 | 0.0 | TRP | A:90 | A:90 | 126.0 | 0.494 | G | -52.9 | -29.8 | |
af-q8n149-f1 | 1 | Q8N149 | 81.84 | 0.0 | TRP | A:89 | A:89 | 142.0 | 0.557 | G | -53.6 | -29.3 | |
af-q8n423-f1 | 1 | Q8N423 | 81.12 | 0.0 | TRP | A:90 | A:90 | 155.0 | 0.608 | G | -55.2 | -29.3 |