Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 54803621 . A C CCDS12887.1:NM_006865.3:c.203cTc>cGc_NP_006856.3:p.68L>R Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 (LILRA3), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zdx 2 A0A0G2JQ46 85.71 0.0 X-RAY
 2020-07-22 LEU B:76 B:45 114.0 0.671 G -65.5 -35.4 114.0 0.671 0.0
6aee 4 A0A0G2JQ44 86.22 0.0 X-RAY
 2019-07-31 PRO G:44 G:45 86.0 0.593 T -67.0 -17.1 86.0 0.593 0.0
PRO H:44 H:45 79.0 0.545 G -67.0 -14.9 NA NA NA
6aed 1 Q8N423 81.36 0.0 X-RAY
 2019-07-31 SER A:45 A:45 32.0 0.278 S -148.9 172.1 32.0 0.278 0.0
3d2u 3 Q8NHL6 88.38 3e-121 X-RAY
 2008-07-08 PRO C:45 D:45 71.0 0.49 H -57.4 -34.2 47.0 0.324 0.166 A:Q4A1U8:0.166
 HOH
 3.698
 CG
 O
PRO F:45 H:45 74.0 0.51 G -50.3 -38.4 NA NA NA
6k60 4 A0A0G2JQ44 88.78 5e-121 X-RAY
 2019-11-27 PRO D:46 D:45 69.0 0.476 G -73.2 -6.6 69.0 0.476 0.0
PRO H:46 H:45 73.0 0.503 H -69.4 -15.2 NA NA NA
1g0x 1 Q8NHL6 88.78 9e-121 X-RAY
 2001-01-17 PRO A:44 A:45 75.0 0.517 H -55.9 -28.4 75.0 0.517 0.0 HOH
 2.834
 CB
 O
1p7q 4 Q8NHL6 88.78 9e-121 X-RAY
 2003-10-14 PRO D:44 D:45 58.0 0.4 H -56.0 -28.4 46.0 0.317 0.083 B:P61769:0.083
1ufu 1 Q8NHL6 88.78 9e-121 X-RAY
 2004-08-10 PRO A:44 A:45 76.0 0.524 G -52.6 -37.1 76.0 0.524 0.0
1ugn 1 Q8NHL6 87.88 2e-120 X-RAY
 2004-08-10 PRO A:45 A:45 75.0 0.517 H -54.3 -29.2 75.0 0.517 0.0 HOH
 3.325
 CD
 O
4no0 4 Q8NHL6 88.72 2e-120 X-RAY
 2014-11-19 PRO D:42 D:45 74.0 0.51 T -62.4 -28.1 74.0 0.51 0.0 EDO
HOH
 7.650
5.929
 CD
N
 C2
O
6ewa 4 D9IDM8 88.72 2e-120 X-RAY
 2018-11-07 PRO D:42 D:45 71.0 0.49 T -59.3 -22.7 67.0 0.462 0.028 B:P61769:0.028
PRO H:42 H:45 72.0 0.497 G -60.9 -26.1 NA NA NA
6ewc 4 A0A0G2JQ44 88.72 2e-120 X-RAY
 2018-11-07 PRO D:42 D:45 73.0 0.503 G -50.2 -39.4 64.0 0.441 0.062 B:P61769:0.062
PRO H:42 H:45 73.0 0.503 G -50.6 -40.4 NA NA NA
6ewo 4 D9IDM8 88.72 2e-120 X-RAY
 2018-11-07 PRO D:42 D:45 68.0 0.469 G -54.4 -32.4 59.0 0.407 0.062 B:P61769:0.062
 HOH
 7.011
 CG
 O
PRO H:42 H:45 64.0 0.441 G -56.2 -25.7 NA NA NA
1vdg 1 Q8NHL6 88.27 3e-120 X-RAY
 2005-08-02 LEU A:45 A:45 105.0 0.618 T -76.2 -24.3 105.0 0.618 0.0 HOH
 2.853
 N
 O
LEU B:45 B:45 103.0 0.606 G -57.3 -44.2 103.0 0.606 0.0 HOH
 3.767
 N
 O
5knm 3 Q8NHL6 87.88 3e-120 X-RAY
 2017-06-14 LEU C:114 D:45 118.0 0.694 S -80.1 -36.4 103.0 0.606 0.088 B:P61769:0.088
2otp 1 Q8N149 83.84 4e-112 X-RAY
 2008-02-19 SER A:45 A:45 50.0 0.435 -159.9 155.0 50.0 0.435 0.0 HOH
 6.341
 N
 O
SER B:45 B:45 50.0 0.435 -99.8 155.5 50.0 0.435 0.0 HOH
 6.954
 N
 O
2gw5 1 Q8N423 80.3 5e-106 X-RAY
 2006-06-20 SER A:45 NA:NA DO NA DO DO DO NA NA NA
6bcs 1 A0A0G2JNQ7 80.3 6e-106 X-RAY
 2018-09-05 SER A:46 A:45 131.0 1.0 S -77.2 -18.9 131.0 1.0 0.0 BEN
DMS
HOH
 7.898
9.758
4.198
 O
O
O
 N2
C2
O
2dyp 4 Q8N423 80.2 2e-105 X-RAY
 2006-11-07 SER D:45 D:45 68.0 0.591 -32.1 -60.4 65.0 0.565 0.026 B:P61769:0.009
A:P17693:0.026
 HOH
 3.694
 CB
 O
3q2c 1 Q8N6C8 98.97 3e-63 X-RAY
 2011-07-13 LEU A:45 A:45 107.0 0.629 G -55.0 -31.8 107.0 0.629 0.0 HOH
 5.758
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n6c8-f1 1 Q8N6C8 100.0 0.0 LEU A:68 A:68 115.0 0.676 T -62.3 -17.2
af-o75019-f1 1 O75019 85.39 0.0 PRO A:68 A:68 79.0 0.545 T -64.9 -10.1
af-q8nhl6-f1 1 Q8NHL6 86.4 0.0 LEU A:68 A:68 123.0 0.724 G -61.6 -24.2
af-q8n149-f1 1 Q8N149 81.84 0.0 SER A:68 A:68 105.0 0.913 T -69.0 -19.9
af-q8n423-f1 1 Q8N423 81.12 0.0 SER A:68 A:68 71.0 0.617 T -61.9 -17.4