Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55085920 . G A CCDS12900.1:NM_006866.2:c.223Gag>Aag_NP_006857.1:p.75E>K Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
2019-07-31 GLU G:52 G:53 136.0 0.716 H -57.0 -33.0 136.0 0.716 0.0
GLU H:52 H:53 132.0 0.695 H -62.9 -40.8 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
2008-02-19 GLU A:52 A:52 162.0 0.853 S -131.6 54.8 162.0 0.853 0.0 HOH
2.932
CA
O
GLU B:52 B:52 135.0 0.711 S -137.4 -55.7 135.0 0.711 0.0 HOH
3.902
CG
O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
2008-07-08 GLU C:53 D:53 124.0 0.653 H -58.7 -42.6 124.0 0.653 0.0 HOH
3.422
OE1
O
GLU F:53 H:53 109.0 0.574 H -66.0 -28.0 NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
2019-11-27 GLU D:54 D:53 140.0 0.737 H -61.3 -32.5 140.0 0.737 0.0
GLU H:54 NA:NA DO NA DO DO DO NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
2004-08-10 GLU A:53 A:53 130.0 0.684 H -59.8 -34.6 130.0 0.684 0.0 HOH
2.731
O
O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
2001-01-17 GLU A:52 A:53 141.0 0.742 H -61.0 -28.6 141.0 0.742 0.0 HOH
2.799
OE1
O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
2003-10-14 GLU D:52 D:53 83.0 NA H -70.6 -10.2 83.0 NA NA
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
2004-08-10 GLU A:52 A:53 137.0 0.721 H -58.3 -37.5 137.0 0.721 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
2005-08-02 GLU A:53 A:53 121.0 0.637 H -53.2 -51.7 121.0 0.637 0.0 HOH
8.176
O
O
GLU B:53 B:53 138.0 0.726 H -60.2 -42.8 138.0 0.726 0.0 HOH
8.608
O
O
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
2014-11-19 GLU D:50 D:53 159.0 0.837 T -47.0 -45.8 159.0 0.837 0.0
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 GLU D:50 NA:NA DO NA DO DO DO NA NA NA
GLU H:50 H:53 143.0 0.753 H -44.0 -43.3 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
2018-11-07 GLU D:50 D:53 172.0 0.905 H -35.6 -29.6 172.0 0.905 0.0
GLU H:50 H:53 164.0 0.863 H -62.1 9.4 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 GLU D:50 D:53 177.0 0.932 H -54.5 -39.6 177.0 0.932 0.0
GLU H:50 H:53 157.0 0.826 H -61.6 -42.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 GLU A:75 A:75 56.0 0.295 -131.9 83.8
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 GLU A:76 A:76 122.0 0.642 H -62.3 -29.6
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 GLU A:76 A:76 117.0 0.616 H -64.0 -28.8