Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55086237 . C A CCDS12900.1:NM_006866.2:c.392cCt>cAt_NP_006857.1:p.131P>H Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
2019-07-31 PRO G:109 G:110 4.0 0.028 S -78.9 11.2 4.0 0.028 0.0
PRO H:109 H:110 11.0 0.076 S -71.1 -14.9 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
2008-02-19 PRO A:108 A:108 114.0 0.786 S -50.4 -40.5 60.0 0.414 0.372 B:Q8N149:0.372
PRO B:108 B:108 105.0 0.724 S -71.8 -26.6 36.0 0.248 0.476 A:Q8N149:0.476
HOH
4.660
C
O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
2008-07-08 PRO C:110 D:110 60.0 0.414 S -76.0 -13.0 60.0 0.414 0.0 HOH
3.786
CD
O
PRO F:110 H:110 60.0 0.414 S -78.5 -6.7 NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
2019-11-27 PRO D:111 NA:NA DO NA DO DO DO NA NA NA
PRO H:111 NA:NA DO NA DO DO DO NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
2004-08-10 PRO A:110 A:110 47.0 0.324 S -74.1 -12.4 47.0 0.324 0.0 HOH
3.031
CG
O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
2001-01-17 PRO A:109 A:110 54.0 0.372 S -71.4 -22.6 54.0 0.372 0.0 HOH
2.961
CG
O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
2003-10-14 PRO D:109 D:110 58.0 0.4 S -66.8 -8.1 58.0 0.4 0.0
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
2004-08-10 PRO A:109 A:110 59.0 0.407 S -72.9 -14.4 59.0 0.407 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
2005-08-02 PRO A:110 A:110 47.0 0.324 S -71.6 -23.1 47.0 0.324 0.0 HOH
4.871
N
O
PRO B:110 B:110 46.0 0.317 S -58.7 -10.0 46.0 0.317 0.0 HOH
9.633
CD
O
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
2014-11-19 PRO D:107 D:110 59.0 0.407 S -79.0 -7.3 59.0 0.407 0.0 HOH
4.193
CD
O
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 PRO D:107 D:110 53.0 0.366 S -74.0 -8.6 53.0 0.366 0.0 HOH
7.307
CB
O
PRO H:107 H:110 54.0 0.372 S -74.5 -9.7 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
2018-11-07 PRO D:107 D:110 56.0 0.386 S -66.6 -15.2 56.0 0.386 0.0
PRO H:107 H:110 57.0 0.393 S -65.7 -16.1 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 PRO D:107 D:110 56.0 0.386 S -78.1 -5.1 56.0 0.386 0.0 HOH
4.758
N
O
PRO H:107 H:110 54.0 0.372 S -78.9 -5.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 PRO A:131 A:131 0.0 0.0 S -78.8 -12.8
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 PRO A:133 A:133 0.0 0.0 S -73.4 -13.5
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 PRO A:133 A:133 1.0 0.007 S -71.4 -12.4