Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55086338 . C A CCDS12900.1:NM_006866.2:c.493Cgc>Agc_NP_006857.1:p.165R>S Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
2019-07-31 CYS G:143 G:144 50.0 0.37 -155.3 157.1 50.0 0.37 0.0
CYS H:143 H:144 95.0 0.704 360.0 141.0 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
2008-02-19 CYS A:142 A:142 30.0 0.222 E -124.1 168.3 22.0 0.163 0.059 B:Q8N149:0.059
HOH
5.367
O
O
CYS B:142 B:142 27.0 0.2 E -115.2 136.0 12.0 0.089 0.111 A:Q8N149:0.111
HOH
7.178
N
O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
2008-07-08 CYS C:144 D:144 55.0 0.407 E -107.3 151.3 55.0 0.407 0.0 HOH
4.618
C
O
CYS F:144 H:144 57.0 0.422 E -125.5 147.3 NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
2019-11-27 CYS D:145 D:144 49.0 0.363 E -100.3 172.7 49.0 0.363 0.0
CYS H:145 NA:NA DO NA DO DO DO NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
2004-08-10 CYS A:144 A:144 47.0 0.348 E -128.0 161.0 47.0 0.348 0.0 HOH
2.947
N
O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
2001-01-17 CYS A:143 A:144 45.0 0.333 E -105.1 129.5 45.0 0.333 0.0 HOH
3.040
N
O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
2003-10-14 CYS D:143 D:144 73.0 0.541 -108.8 -153.1 73.0 0.541 0.0
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
2004-08-10 CYS A:143 A:144 91.0 0.674 360.0 152.7 91.0 0.674 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
2005-08-02 CYS A:144 A:144 27.0 0.2 E -106.8 159.7 16.0 0.119 0.081 B:Q8NHL6:0.081
HOH
5.181
SG
O
CYS B:144 B:144 39.0 0.289 E -139.0 152.2 22.0 0.163 0.126 A:Q8NHL6:0.126
HOH
5.374
SG
O
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
2014-11-19 CYS D:141 D:144 64.0 0.474 E -88.4 143.0 64.0 0.474 0.0 HOH
8.430
SG
O
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 CYS D:141 D:144 62.0 0.459 E -112.3 146.5 62.0 0.459 0.0
CYS H:141 H:144 41.0 0.304 E -112.4 137.4 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
2018-11-07 CYS D:141 D:144 54.0 0.4 E -135.4 149.1 54.0 0.4 0.0
CYS H:141 H:144 52.0 0.385 E -131.8 147.3 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 CYS D:141 D:144 65.0 0.481 E -117.4 137.0 65.0 0.481 0.0 HOH
4.614
O
O
CYS H:141 H:144 40.0 0.296 E -123.7 127.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 ARG A:165 A:165 90.0 0.4 E -109.6 137.1
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 CYS A:167 A:167 45.0 0.333 E -105.1 133.2
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 CYS A:167 A:167 45.0 0.333 E -101.2 132.9