Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55086368 . T A CCDS12900.1:NM_006866.2:c.523Tgg>Agg_NP_006857.1:p.175W>R Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
 2019-07-31 SER G:153 G:154 132.0 1.0 360.0 -34.6 108.0 0.939 0.061 B:P61769:0.209
SER H:153 H:154 117.0 1.0 360.0 -43.9 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
 2008-02-19 TRP A:152 A:152 194.0 0.761 S -144.2 142.1 142.0 0.557 0.204 B:Q8N149:0.204
 HOH
 3.192
 CE3
 O
TRP B:152 B:152 248.0 0.973 T -127.1 102.5 181.0 0.71 0.263 A:Q8N149:0.263
 HOH
 6.258
 C
 O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
 2008-07-08 SER C:154 NA:NA DO NA DO DO DO NA NA NA
SER F:154 NA:NA DO NA DO DO DO NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
 2019-11-27 SER D:155 D:154 134.0 1.0 360.0 -149.6 134.0 1.0 0.0
SER H:155 NA:NA DO NA DO DO DO NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
 2004-08-10 SER A:154 A:154 127.0 1.0 360.0 5.5 127.0 1.0 0.0 HOH
 7.125
 O
 O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
 2001-01-17 SER A:153 A:154 93.0 0.809 T -64.3 -30.2 93.0 0.809 0.0 HOH
 2.568
 O
 O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
 2003-10-14 SER D:153 D:154 42.0 0.365 -87.9 146.7 42.0 0.365 0.0
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
 2004-08-10 SER A:153 A:154 118.0 1.0 360.0 -31.7 118.0 1.0 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
 2005-08-02 SER A:154 A:154 107.0 0.93 S -91.3 75.9 107.0 0.93 0.0 HOH
 3.199
 OG
 O
SER B:154 B:154 85.0 0.739 S -178.5 154.2 85.0 0.739 0.0
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
 2014-11-19 SER D:151 D:154 34.0 0.296 -94.4 -55.5 34.0 0.296 0.0 HOH
 5.715
 OG
 O
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
 2018-11-07 SER D:151 D:154 40.0 0.348 -87.8 -29.4 36.0 0.313 0.035 B:P61769:0.035
 HOH
 9.914
 O
 O
SER H:151 H:154 46.0 0.4 T -83.3 -54.5 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
 2018-11-07 SER D:151 D:154 50.0 0.435 -68.4 -30.1 45.0 0.391 0.044 B:P61769:0.043
SER H:151 H:154 40.0 0.348 -86.4 -39.8 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
 2018-11-07 SER D:151 D:154 40.0 0.348 -90.7 -26.9 37.0 0.322 0.026 B:P61769:0.026
 HOH
 4.199
 O
 O
SER H:151 H:154 52.0 0.452 -88.9 -62.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 TRP A:175 A:175 61.0 0.239 -89.0 151.7
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 SER A:177 A:177 25.0 0.217 E -66.2 132.7
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 SER A:177 A:177 33.0 0.287 -67.2 124.3