Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr19 55086447 . A C CCDS12900.1:NM_006866.2:c.602aAc>aCc_NP_006857.1:p.201N>T Homo sapiens leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 (LILRA2), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6aee 4 A0A0G2JQ44 80.41 0.0 X-RAY
2019-07-31 ASN G:179 G:180 149.0 0.931 T -70.9 -13.0 118.0 0.738 0.193 B:P61769:0.175
A:P17693:0.019
ASN H:179 H:180 144.0 0.9 T -79.0 -27.0 NA NA NA
2otp 1 Q8N149 99.49 6e-142 X-RAY
2008-02-19 ASN A:178 A:178 151.0 0.944 T -57.0 -32.8 151.0 0.944 0.0 HOH
2.771
OD1
O
ASN B:178 B:178 146.0 0.912 S -70.0 -35.9 146.0 0.912 0.0 HOH
2.781
CB
O
3d2u 3 Q8NHL6 80.81 2e-104 X-RAY
2008-07-08 ASN C:180 D:180 144.0 0.9 T -84.7 -18.8 135.0 0.844 0.056 B:P61769:0.056
HOH
2.986
OD1
O
ASN F:180 H:180 137.0 0.856 T -79.7 -17.9 NA NA NA
6k60 4 A0A0G2JQ44 81.12 3e-104 X-RAY
2019-11-27 ASN D:181 D:180 130.0 0.812 T -74.9 -9.3 122.0 0.762 0.05 B:P61769:0.05
ASN H:181 H:180 139.0 0.869 T -76.1 -27.7 NA NA NA
1ugn 1 Q8NHL6 80.3 8e-104 X-RAY
2004-08-10 ASN A:180 A:180 147.0 0.919 T -75.7 -15.1 147.0 0.919 0.0 HOH
3.610
CB
O
1g0x 1 Q8NHL6 80.71 1e-103 X-RAY
2001-01-17 ASN A:179 A:180 137.0 0.856 T -74.3 -18.0 137.0 0.856 0.0 HOH
3.283
CB
O
1p7q 4 Q8NHL6 80.71 1e-103 X-RAY
2003-10-14 ASN D:179 D:180 135.0 0.844 T -85.1 34.5 134.0 0.838 0.006 B:P61769:0.006
1ufu 1 Q8NHL6 80.71 1e-103 X-RAY
2004-08-10 ASN A:179 A:180 143.0 0.894 T -85.1 4.2 143.0 0.894 0.0
1vdg 1 Q8NHL6 80.1 3e-102 X-RAY
2005-08-02 ASN A:180 A:180 147.0 0.919 T -59.9 -26.4 147.0 0.919 0.0 HOH
5.048
O
O
ASN B:180 B:180 144.0 0.9 T -85.2 10.7 144.0 0.9 0.0 HOH
6.423
ND2
O
4no0 4 Q8NHL6 80.51 5e-102 X-RAY
2014-11-19 ASN D:177 D:180 141.0 0.881 T -72.7 -18.6 140.0 0.875 0.006 B:P61769:0.006
HOH
5.552
O
O
6ewa 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 ASN D:177 D:180 142.0 0.887 T -71.9 -28.1 131.0 0.819 0.068 B:P61769:0.069
HOH
6.218
C
O
ASN H:177 H:180 138.0 0.863 T -72.9 -17.1 NA NA NA
6ewc 4 A0A0G2JQ44 80.51 5e-102 X-RAY
2018-11-07 ASN D:177 D:180 138.0 0.863 T -85.2 0.6 138.0 0.863 0.0
ASN H:177 H:180 140.0 0.875 T -87.7 3.4 NA NA NA
6ewo 4 D9IDM8 80.51 5e-102 X-RAY
2018-11-07 ASN D:177 D:180 138.0 0.863 T -69.5 -14.9 138.0 0.863 0.0 HOH
5.181
O
O
ASN H:177 H:180 139.0 0.869 T -71.7 -15.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q8n149-f1 1 Q8N149 100.0 0.0 ASN A:201 A:201 137.0 0.856 T -75.3 -17.9
af-q8n6c8-f1 1 Q8N6C8 81.84 0.0 ARG A:203 A:203 198.0 0.88 T -73.7 -20.9
af-q8nhl6-f1 1 Q8NHL6 81.15 0.0 ASN A:203 A:203 110.0 0.688 T -69.6 -25.2