Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr19 | 55106183 | . | G | A | CCDS12901.1:NM_006863.3:c.124Ggg>Agg_NP_006854.1:p.42G>R | Homo sapiens leukocyte immunoglobulin like receptor A1 (LILRA1), transcript variant 1, mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
6aee | 4 | A0A0G2JQ44 | 85.46 | 0.0 |
X-RAY |
2019-07-31 | GLY | G:18 | G:19 | 24.0 | 0.32 | T | 91.1 | -25.0 | 24.0 | 0.32 | 0.0 | ||||||
GLY | H:18 | H:19 | 29.0 | 0.387 | T | 99.0 | -26.9 | NA | NA | NA | |||||||||||||
6zdx | 2 | A0A0G2JQ46 | 84.21 | 0.0 |
X-RAY |
2020-07-22 | GLY | B:50 | B:19 | 37.0 | 0.493 | T | 92.0 | -37.7 | 37.0 | 0.493 | 0.0 | ||||||
6aed | 1 | Q8N423 | 84.63 | 0.0 |
X-RAY |
2019-07-31 | GLY | A:19 | A:19 | 37.0 | 0.493 | T | 84.9 | -35.0 | 37.0 | 0.493 | 0.0 | ||||||
1ugn | 1 | Q8NHL6 | 88.89 | 7e-122 |
X-RAY |
2004-08-10 | GLY | A:19 | A:19 | 25.0 | 0.333 | T | 87.1 | -15.4 | 25.0 | 0.333 | 0.0 |
HOH |
2.865 |
O |
O |
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3d2u | 3 | Q8NHL6 | 88.38 | 3e-121 |
X-RAY |
2008-07-08 | GLY | C:19 | D:19 | 28.0 | 0.373 | T | 91.3 | -25.8 | 28.0 | 0.373 | 0.0 |
HOH |
2.753 |
O |
O |
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GLY | F:19 | H:19 | 42.0 | 0.56 | T | 87.0 | -7.4 | NA | NA | NA | |||||||||||||
1g0x | 1 | Q8NHL6 | 88.78 | 1e-120 |
X-RAY |
2001-01-17 | GLY | A:18 | A:19 | 35.0 | 0.467 | T | 92.2 | -14.7 | 35.0 | 0.467 | 0.0 |
HOH |
2.654 |
O |
O |
||
1p7q | 4 | Q8NHL6 | 88.78 | 1e-120 |
X-RAY |
2003-10-14 | GLY | D:18 | D:19 | 38.0 | 0.507 | T | 99.9 | -35.2 | 33.0 | 0.44 | 0.067 |
B:P61769:0.067 |
|||||
1ufu | 1 | Q8NHL6 | 88.78 | 1e-120 |
X-RAY |
2004-08-10 | GLY | A:18 | A:19 | 32.0 | 0.427 | T | 87.1 | -3.1 | 32.0 | 0.427 | 0.0 | ||||||
6k60 | 4 | A0A0G2JQ44 | 88.32 | 1e-120 |
X-RAY |
2019-11-27 | GLY | D:20 | D:19 | 48.0 | 0.64 | T | 82.8 | 5.2 | 44.0 | 0.587 | 0.053 |
B:P61769:0.053 |
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GLY | H:20 | H:19 | 38.0 | 0.507 | T | 133.2 | -15.9 | NA | NA | NA | |||||||||||||
4no0 | 4 | Q8NHL6 | 88.72 | 4e-120 |
X-RAY |
2014-11-19 | GLY | D:16 | D:19 | 50.0 | 0.667 | T | 90.2 | -2.6 | 50.0 | 0.667 | 0.0 |
HOH |
5.172 |
CA |
O |
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6ewa | 4 | D9IDM8 | 88.72 | 4e-120 |
X-RAY |
2018-11-07 | GLY | D:16 | D:19 | 56.0 | 0.747 | T | 92.4 | -10.4 | 56.0 | 0.747 | 0.0 | ||||||
GLY | H:16 | H:19 | 36.0 | 0.48 | T | 96.7 | -17.9 | NA | NA | NA | |||||||||||||
6ewc | 4 | A0A0G2JQ44 | 88.72 | 4e-120 |
X-RAY |
2018-11-07 | GLY | D:16 | D:19 | 40.0 | 0.533 | T | 102.1 | -36.0 | 40.0 | 0.533 | 0.0 | ||||||
GLY | H:16 | H:19 | 40.0 | 0.533 | T | 100.9 | -35.7 | NA | NA | NA | |||||||||||||
6ewo | 4 | D9IDM8 | 88.72 | 4e-120 |
X-RAY |
2018-11-07 | GLY | D:16 | D:19 | 52.0 | 0.693 | T | 85.3 | 6.4 | 47.0 | 0.627 | 0.066 |
B:P61769:0.067 |
HOH |
6.486 |
N |
O |
|
GLY | H:16 | H:19 | 44.0 | 0.587 | T | 84.4 | 0.5 | NA | NA | NA | |||||||||||||
5knm | 3 | Q8NHL6 | 86.87 | 3e-118 |
X-RAY |
2017-06-14 | GLY | C:88 | D:19 | 46.0 | 0.613 | T | 68.0 | 7.9 | 46.0 | 0.613 | 0.0 | ||||||
1vdg | 1 | Q8NHL6 | 86.8 | 2e-117 |
X-RAY |
2005-08-02 | GLY | A:19 | A:19 | 31.0 | 0.413 | T | 88.2 | -27.9 | 31.0 | 0.413 | 0.0 | ||||||
GLY | B:19 | B:19 | 34.0 | 0.453 | T | 99.7 | -24.5 | 34.0 | 0.453 | 0.0 |
HOH |
3.398 |
C |
O |
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2gw5 | 1 | Q8N423 | 80.81 | 2e-105 |
X-RAY |
2006-06-20 | GLY | A:19 | A:19 | 34.0 | 0.453 | T | 46.4 | 0.6 | 34.0 | 0.453 | 0.0 |
HOH |
2.613 |
O |
O |
||
6bcs | 1 | A0A0G2JNQ7 | 80.81 | 2e-105 |
X-RAY |
2018-09-05 | GLY | A:20 | A:19 | 39.0 | 0.52 | T | 89.1 | -10.4 | 39.0 | 0.52 | 0.0 |
CL DMS HOH |
6.190 9.186 3.257 |
N N C |
CL C2 O |
||
2dyp | 4 | Q8N423 | 81.12 | 3e-105 |
X-RAY |
2006-11-07 | GLY | D:19 | D:19 | 33.0 | 0.44 | T | 106.5 | -33.1 | 31.0 | 0.413 | 0.027 |
B:P61769:0.027 |
HOH |
3.427 |
N |
O |
|
2otp | 1 | Q8N149 | 80.3 | 1e-104 |
X-RAY |
2008-02-19 | GLY | A:19 | A:19 | 45.0 | 0.6 | S | 87.0 | 37.9 | 45.0 | 0.6 | 0.0 |
HOH |
8.265 |
O |
O |
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GLY | B:19 | B:19 | 71.0 | 0.947 | T | 85.1 | 1.8 | 71.0 | 0.947 | 0.0 |
HOH |
2.569 |
O |
O |
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3q2c | 1 | Q8N6C8 | 86.6 | 1e-50 |
X-RAY |
2011-07-13 | GLY | A:19 | A:19 | 42.0 | 0.56 | T | 88.4 | -23.1 | 42.0 | 0.56 | 0.0 |
HOH |
7.512 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-o75019-f1 | 1 | O75019 | 100.0 | 0.0 | GLY | A:42 | A:42 | 40.0 | 0.533 | T | 88.5 | -13.9 | |
af-q8n6c8-f1 | 1 | Q8N6C8 | 85.39 | 0.0 | GLY | A:42 | A:42 | 40.0 | 0.533 | T | 85.1 | -10.2 | |
af-q8n423-f1 | 1 | Q8N423 | 84.62 | 0.0 | GLY | A:42 | A:42 | 39.0 | 0.52 | T | 84.9 | -14.4 | |
af-q8nhl6-f1 | 1 | Q8NHL6 | 84.73 | 0.0 | GLY | A:42 | A:42 | 38.0 | 0.507 | T | 91.2 | -21.8 |