Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr2 98263883 . A C CCDS2032.1:NM_001862.2:c.254aAc>aCc_NP_001853.2:p.85N>T Homo sapiens cytochrome c oxidase subunit 5B (COX5B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2y69 6 P00428 82.95 1e-81 X-RAY
 2011-02-23 ASN F:85 F:54 77.0 0.481 S -101.2 14.6 77.0 0.481 0.0 HOH
 3.252
 CB
 O
ASN S:85 S:54 92.0 0.575 S -86.0 -21.0 NA NA NA
5z62 6 P10606 100.0 3e-71 EM
 2019-02-27 ASN F:54 F:85 95.0 0.594 S -86.8 11.5 95.0 0.594 0.0
7o37 18 P19536 85.86 2e-64 EM
 2021-10-13 ASN BA:55 f:55 81.0 0.506 S -81.6 -12.5 76.0 0.475 0.031 Z:P19783:0.031
7o3c 18 P19536 85.86 2e-64 EM
 2021-10-13 ASN BA:55 f:55 87.0 0.544 S -101.5 29.5 87.0 0.544 0.0
7o3e 16 P19536 85.86 2e-64 EM
 2021-10-13 ASN V:55 f:55 84.0 0.525 S -83.2 -8.9 72.0 0.45 0.075 T:P19783:0.075
5j4z 67 W5PW27 86.73 2e-64 EM
 2016-09-21 ASN DC:54 BP:54 78.0 NA S -66.2 -19.1 78.0 NA NA
5j7y 67 W5PW27 86.73 2e-64 EM
 2016-09-21 ASN DC:54 BP:54 78.0 NA S -66.2 -19.1 78.0 NA NA
1occ 6 P00428 85.71 5e-64 X-RAY
 1996-12-07 ASN F:54 F:54 86.0 0.537 S -119.1 20.9 86.0 0.537 0.0
ASN S:54 S:54 85.0 0.531 S -119.0 20.9 85.0 0.531 0.0
1oco 6 P00428 85.71 5e-64 X-RAY
 1999-07-22 ASN F:54 F:54 92.0 0.575 S -117.4 11.7 92.0 0.575 0.0
ASN S:54 S:54 91.0 0.569 S -117.3 12.0 91.0 0.569 0.0
1ocr 6 P00428 85.71 5e-64 X-RAY
 1999-07-29 ASN F:54 F:54 74.0 0.463 S -105.5 16.0 74.0 0.463 0.0
ASN S:54 S:54 73.0 0.456 S -106.2 16.0 73.0 0.456 0.0
1ocz 6 P00428 85.71 5e-64 X-RAY
 1999-07-22 ASN F:54 F:54 91.0 0.569 S -66.8 -3.6 91.0 0.569 0.0
ASN S:54 S:54 89.0 0.556 S -69.2 -1.5 89.0 0.556 0.0
1v54 6 P00428 85.71 5e-64 X-RAY
 2003-12-23 ASN F:54 F:54 78.0 0.487 S -98.9 13.3 78.0 0.487 0.0 HOH
 4.143
 O
 O
ASN S:54 S:54 80.0 0.5 S -97.4 5.7 80.0 0.5 0.0 HOH
 6.358
 N
 O
1v55 6 P00428 85.71 5e-64 X-RAY
 2003-12-23 ASN F:54 F:54 78.0 0.487 S -98.2 12.5 78.0 0.487 0.0 HOH
 3.054
 O
 O
ASN S:54 S:54 83.0 0.519 S -97.8 6.3 83.0 0.519 0.0 HOH
 2.860
 ND2
 O
2dyr 6 P00428 85.71 5e-64 X-RAY
 2007-04-03 ASN F:54 F:54 79.0 0.494 S -94.9 5.3 79.0 0.494 0.0 HOH
 4.030
 O
 O
ASN S:54 S:54 98.0 0.613 S -77.0 -25.6 98.0 0.613 0.0 HOH
 6.327
 N
 O
2dys 6 P00428 85.71 5e-64 X-RAY
 2007-04-03 ASN F:54 F:54 79.0 0.494 S -98.6 17.3 79.0 0.494 0.0 HOH
 2.725
 O
 O
ASN S:54 S:54 86.0 0.537 S -95.0 7.0 86.0 0.537 0.0 HOH
 4.103
 N
 O
2eij 6 P00428 85.71 5e-64 X-RAY
 2007-05-29 ASN F:54 F:54 75.0 0.469 S -100.8 16.3 75.0 0.469 0.0 HOH
 2.870
 O
 O
ASN S:54 S:54 83.0 0.519 S -97.8 6.9 83.0 0.519 0.0 HOH
 3.018
 ND2
 O
2eik 6 P00428 85.71 5e-64 X-RAY
 2007-05-29 ASN F:54 F:54 80.0 0.5 S -95.5 13.7 80.0 0.5 0.0 HOH
 2.550
 OD1
 O
ASN S:54 S:54 84.0 0.525 S -94.7 7.1 84.0 0.525 0.0 HOH
 3.857
 OD1
 O
2eil 6 P00428 85.71 5e-64 X-RAY
 2007-05-29 ASN F:54 F:54 81.0 0.506 S -97.8 15.8 81.0 0.506 0.0 HOH
 2.592
 OD1
 O
ASN S:54 S:54 82.0 0.512 S -96.0 7.0 82.0 0.512 0.0 HOH
 6.969
 O
 O
2eim 6 P00428 85.71 5e-64 X-RAY
 2007-05-29 ASN F:54 F:54 80.0 0.5 S -94.3 20.8 80.0 0.5 0.0 HOH
 2.961
 O
 O
ASN S:54 S:54 82.0 0.512 S -93.8 15.4 82.0 0.512 0.0 HOH
 6.873
 O
 O
2ein 6 P00428 85.71 5e-64 X-RAY
 2007-05-29 ASN F:54 F:54 79.0 0.494 S -89.1 15.5 79.0 0.494 0.0 HOH
 4.054
 O
 O
ASN S:54 S:54 87.0 0.544 S -81.8 5.1 87.0 0.544 0.0 HOH
 3.033
 ND2
 O
2occ 6 P00428 85.71 5e-64 X-RAY
 1999-01-13 ASN F:54 F:54 76.0 0.475 S -104.0 5.1 76.0 0.475 0.0
ASN S:54 S:54 75.0 0.469 S -107.4 6.5 NA NA NA
2ybb 25 P00428 85.71 5e-64 EM
 2011-10-19 ASN Y:54 Q:54 87.0 0.544 S -119.2 21.0 87.0 0.544 0.0
2zxw 6 P00428 85.71 5e-64 X-RAY
 2009-02-24 ASN F:54 F:54 79.0 0.494 S -94.0 8.5 79.0 0.494 0.0 HOH
 2.650
 N
 O
ASN S:54 S:54 94.0 0.588 S -66.7 -34.7 NA NA NA
3abk 6 P00428 85.71 5e-64 X-RAY
 2010-03-09 ASN F:54 F:54 73.0 0.456 S -100.3 8.5 73.0 0.456 0.0 HOH
 4.139
 O
 O
ASN S:54 S:54 83.0 0.519 S -107.9 10.9 NA NA NA
3abl 6 P00428 85.71 5e-64 X-RAY
 2010-01-19 ASN F:54 F:54 74.0 0.463 S -95.8 14.7 74.0 0.463 0.0 HOH
 2.629
 ND2
 O
ASN S:54 S:54 89.0 0.556 S -74.6 -22.2 NA NA NA
3abm 6 P00428 85.71 5e-64 X-RAY
 2010-01-19 ASN F:54 F:54 76.0 0.475 S -100.1 15.0 76.0 0.475 0.0 HOH
 3.166
 O
 O
ASN S:54 S:54 84.0 0.525 S -75.8 -24.5 NA NA NA
3ag1 6 P00428 85.71 5e-64 X-RAY
 2010-04-28 ASN F:54 F:54 82.0 0.512 S -98.8 13.1 82.0 0.512 0.0 HOH
 3.007
 N
 O
ASN S:54 S:54 81.0 0.506 S -102.3 2.6 NA NA NA
3ag2 6 P00428 85.71 5e-64 X-RAY
 2010-04-28 ASN F:54 F:54 98.0 0.613 S -96.4 7.7 98.0 0.613 0.0 HOH
 3.028
 O
 O
ASN S:54 S:54 93.0 0.581 S -103.6 9.7 NA NA NA
3ag3 6 P00428 85.71 5e-64 X-RAY
 2010-04-28 ASN F:54 F:54 88.0 0.55 S -93.9 2.4 88.0 0.55 0.0 HOH
 4.630
 N
 O
ASN S:54 S:54 89.0 0.556 S -87.4 -10.9 NA NA NA
3ag4 6 P00428 85.71 5e-64 X-RAY
 2010-04-28 ASN F:54 F:54 79.0 0.494 S -93.2 8.0 79.0 0.494 0.0 HOH
 2.603
 OD1
 O
ASN S:54 S:54 99.0 0.619 S -71.4 -28.3 NA NA NA
3asn 6 P00428 85.71 5e-64 X-RAY
 2011-08-03 ASN F:54 F:54 77.0 0.481 S -98.8 6.6 77.0 0.481 0.0 HOH
 2.525
 CB
 O
ASN S:54 S:54 90.0 0.562 S -46.8 -32.2 NA NA NA
3aso 6 P00428 85.71 5e-64 X-RAY
 2011-08-03 ASN F:54 F:54 77.0 0.481 S -96.2 8.7 77.0 0.481 0.0 HOH
 2.761
 CB
 O
ASN S:54 S:54 89.0 0.556 S -67.2 -30.9 NA NA NA
3wg7 6 P00428 85.71 5e-64 X-RAY
 2014-04-30 ASN F:54 F:54 95.0 0.594 S -95.7 10.0 95.0 0.594 0.0 HOH
 3.437
 ND2
 O
ASN S:54 S:54 80.0 0.5 S -101.3 10.7 NA NA NA
3x2q 6 P00428 85.71 5e-64 X-RAY
 2015-06-10 ASN F:54 F:54 97.0 0.606 S -98.3 11.2 97.0 0.606 0.0 HOH
 2.673
 CB
 O
ASN S:54 S:54 84.0 0.525 S -101.6 6.7 NA NA NA
5b1a 6 P00428 85.71 5e-64 X-RAY
 2016-09-14 ASN F:54 F:54 97.0 0.606 S -83.1 1.9 97.0 0.606 0.0 HOH
 2.449
 OD1
 O
ASN S:54 S:54 82.0 0.512 S -104.4 6.8 NA NA NA
5b1b 6 P00428 85.71 5e-64 X-RAY
 2016-09-14 ASN F:54 F:54 72.0 0.45 S -105.7 23.2 72.0 0.45 0.0 HOH
 2.475
 ND2
 O
ASN S:54 S:54 81.0 0.506 S -104.9 5.6 NA NA NA
5b3s 6 P00428 85.71 5e-64 X-RAY
 2017-03-22 ASN F:54 F:54 97.0 0.606 S -100.1 13.3 97.0 0.606 0.0 HOH
 2.559
 ND2
 O
ASN S:54 S:54 81.0 0.506 S -104.2 5.9 NA NA NA
5gpn 39 P00428 85.71 5e-64 EM
 2017-04-05 ASN ZA:54 3:54 65.0 NA S -119.2 20.9 65.0 NA NA
5gup 65 ? 85.71 5e-64 EM
 2017-03-29 ASN ZB:54 Ap:54 86.0 0.537 S -119.2 20.9 86.0 0.537 0.0
5iy5 6 P00428 85.71 5e-64 X-RAY
 2017-01-11 ASN F:54 F:54 77.0 0.481 S -99.6 13.3 66.0 0.412 0.069 D:P00423:0.069
 HOH
 2.955
 O
 O
ASN S:54 S:54 84.0 0.525 S -113.1 15.6 NA NA NA
5luf 17 P00428 85.71 5e-64 EM
 2016-11-30 ASN BA:54 3:54 86.0 0.537 S -119.2 21.0 86.0 0.537 0.0
5w97 6 P00428 85.71 5e-64 X-RAY
 2017-08-09 ASN F:54 F:54 102.0 0.637 S -96.5 2.5 102.0 0.637 0.0 HOH
 4.303
 CB
 O
ASN S:54 f:54 88.0 0.55 S -99.7 3.7 83.0 0.519 0.031 Q:P00423:0.031
 HOH
 6.545
 N
 O
5wau 6 P00428 85.71 5e-64 X-RAY
 2017-08-09 ASN F:54 F:54 97.0 0.606 S -85.2 1.0 97.0 0.606 0.0 HOH
 2.761
 OD1
 O
ASN S:54 f:54 79.0 0.494 S -95.7 2.2 66.0 0.412 0.082 Q:P00423:0.081
 HOH
 2.899
 O
 O
5x19 6 P00428 85.71 5e-64 X-RAY
 2017-08-09 ASN F:54 F:54 105.0 0.656 S -95.4 0.7 105.0 0.656 0.0 HOH
 3.049
 N
 O
ASN S:54 S:54 85.0 0.531 S -99.3 2.6 NA NA NA
5x1b 6 P00428 85.71 5e-64 X-RAY
 2017-08-09 ASN F:54 F:54 98.0 0.613 S -101.5 8.1 98.0 0.613 0.0 HOH
 4.942
 N
 O
ASN S:54 S:54 76.0 0.475 S -110.2 14.1 NA NA NA
5x1f 6 P00428 85.71 5e-64 X-RAY
 2017-08-09 ASN F:54 F:54 104.0 0.65 S -99.6 11.6 104.0 0.65 0.0 HOH
 2.975
 O
 O
ASN S:54 S:54 81.0 0.506 S -96.2 0.1 NA NA NA
5xth 50 P00428 85.71 5e-64 EM
 2017-09-13 ASN YA:54 2:54 86.0 0.537 S -119.4 21.1 86.0 0.537 0.0
5xti 50 P00428 85.71 5e-64 EM
 2017-09-13 ASN YA:54 2:54 87.0 0.544 S -119.4 21.0 87.0 0.544 0.0
ASN AE:54 B2:54 86.0 0.537 S -119.4 21.1 86.0 0.537 0.0
5z84 6 P00428 85.71 5e-64 X-RAY
 2018-08-15 ASN F:54 F:54 102.0 0.637 S -94.1 16.7 102.0 0.637 0.0 HOH
 2.825
 O
 O
ASN S:54 S:54 82.0 0.512 S -108.9 11.9 NA NA NA
5z85 6 P00428 85.71 5e-64 X-RAY
 2018-08-15 ASN F:54 F:54 91.0 0.569 S -87.9 8.7 91.0 0.569 0.0 HOH
 4.604
 ND2
 O
ASN S:54 S:54 82.0 0.512 S -110.2 11.8 NA NA NA
5z86 6 P00428 85.71 5e-64 X-RAY
 2018-08-15 ASN F:54 F:54 94.0 0.588 S -102.5 14.8 94.0 0.588 0.0 HOH
 2.897
 O
 O
ASN S:54 S:54 85.0 0.531 S -101.5 7.9 NA NA NA
5zco 6 P00428 85.71 5e-64 X-RAY
 2018-08-15 ASN F:54 F:54 88.0 0.55 S -91.1 11.2 88.0 0.55 0.0 HOH
 2.855
 O
 O
ASN S:54 S:54 83.0 0.519 S -106.7 11.1 NA NA NA
5zcp 6 P00428 85.71 5e-64 X-RAY
 2018-08-15 ASN F:54 F:54 88.0 0.55 S -90.0 10.4 88.0 0.55 0.0 HOH
 2.730
 OD1
 O
ASN S:54 S:54 83.0 0.519 S -108.2 9.5 NA NA NA
5zcq 6 P00428 85.71 5e-64 X-RAY
 2018-08-15 ASN F:54 F:54 86.0 0.537 S -78.6 -7.2 86.0 0.537 0.0 HOH
 3.532
 ND2
 O
ASN S:54 S:54 77.0 0.481 S -110.4 6.3 NA NA NA
6j8m 6 P00428 85.71 5e-64 X-RAY
 2019-06-26 ASN F:54 F:54 75.0 0.469 S -102.1 18.2 75.0 0.469 0.0 HOH
 2.672
 OD1
 O
ASN S:54 S:54 82.0 0.512 S -102.7 6.2 NA NA NA
6juw 6 P00428 85.71 5e-64 X-RAY
 2020-03-25 ASN F:54 F:54 93.0 0.581 S -98.5 16.5 93.0 0.581 0.0 EDO
HOH
 9.640
2.705
 N
OD1
 O1
O
ASN S:54 S:54 85.0 0.531 S -106.8 11.4 83.0 0.519 0.012 Q:P00423:0.013
 EDO
EDO
HOH
 9.531
9.967
2.711
 N
N
OD1
 O1
C2
O
6jy3 6 P00428 85.71 5e-64 X-RAY
 2019-09-18 ASN F:54 F:54 94.0 0.588 S -100.4 10.1 94.0 0.588 0.0 HOH
 6.364
 N
 O
6jy4 6 P00428 85.71 5e-64 X-RAY
 2019-09-18 ASN F:54 F:54 88.0 0.55 S -101.4 14.3 88.0 0.55 0.0 HOH
 7.165
 O
 O
6nkn 6 P00428 85.71 5e-64 X-RAY
 2019-03-20 ASN F:54 F:54 103.0 0.644 S -85.1 -14.0 103.0 0.644 0.0 HOH
 6.227
 N
 O
ASN S:54 S:54 87.0 0.544 S -99.8 5.7 87.0 0.544 0.0 HOH
 6.602
 N
 O
6nmf 6 P00428 85.71 5e-64 X-RAY
 2019-03-13 ASN F:54 F:54 88.0 0.55 S -80.6 -2.2 88.0 0.55 0.0 HOH
 2.776
 O
 O
ASN S:54 S:54 75.0 0.469 S -114.7 12.0 75.0 0.469 0.0 HOH
 2.625
 ND2
 O
6nmp 6 P00428 85.71 5e-64 X-RAY
 2019-03-13 ASN F:54 F:54 90.0 0.562 S -105.1 11.4 90.0 0.562 0.0 HOH
 9.341
 N
 O
ASN S:54 S:54 80.0 0.5 S -98.7 -3.9 80.0 0.5 0.0 HOH
 3.704
 OD1
 O
7coh 6 P00428 85.71 5e-64 X-RAY
 2021-04-07 ASN F:54 F:54 85.0 0.531 S -100.5 17.1 85.0 0.531 0.0 HOH
 2.973
 O
 O
ASN S:54 S:54 80.0 0.5 S -103.3 6.1 NA NA NA
7ev7 6 P00428 85.71 5e-64 X-RAY
 2021-07-14 ASN F:54 F:54 88.0 0.55 S -101.6 17.9 88.0 0.55 0.0 HOH
 3.127
 O
 O
ASN S:54 S:54 84.0 0.525 S -107.1 7.4 NA NA NA
5xdq 6 P00428 85.11 9e-61 X-RAY
 2017-07-12 ASN F:54 F:54 93.0 0.581 S -97.8 8.6 93.0 0.581 0.0 HOH
 2.648
 ND2
 O
ASN S:54 S:54 82.0 0.512 S -97.2 6.1 NA NA NA
5xdx 6 P00428 85.11 9e-61 X-RAY
 2018-02-07 ASN F:54 F:54 97.0 0.606 S -94.3 4.3 97.0 0.606 0.0 HOH
 3.211
 CA
 O
ASN S:54 S:54 85.0 0.531 S -95.7 7.0 NA NA NA
7cp5 6 P00428 85.11 9e-61 X-RAY
 2021-07-21 ASN F:54 F:54 93.0 0.581 S -101.9 16.2 93.0 0.581 0.0 EDO
HOH
 9.775
6.324
 N
N
 O2
O
ASN S:54 S:54 68.0 0.425 S -105.3 6.0 68.0 0.425 0.0 EDO
HOH
 9.959
2.704
 N
OD1
 C1
O
7d5w 6 P00428 85.11 9e-61 X-RAY
 2021-07-21 ASN F:54 F:54 94.0 0.588 S -103.3 15.2 94.0 0.588 0.0 EDO
HOH
 9.689
2.994
 N
O
 O2
O
ASN S:54 S:54 69.0 0.431 S -102.6 8.5 69.0 0.431 0.0 HOH
 2.814
 OD1
 O
7d5x 6 P00428 85.11 9e-61 X-RAY
 2021-07-21 ASN F:54 F:54 76.0 0.475 S -99.1 14.6 76.0 0.475 0.0 EDO
EDO
HOH
 9.677
8.749
2.734
 N
N
OD1
 O2
C2
O
ASN S:54 S:54 79.0 0.494 S -106.9 8.2 79.0 0.494 0.0 EDO
HOH
 9.953
2.606
 N
OD1
 C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p10606-f1 1 P10606 100.0 8e-94 ASN A:85 A:85 104.0 0.65 S -77.0 0.9