Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr20 6759532 . C A CCDS13099.1:NM_001200.2:c.987tgC>tgA_NP_001191.1:p.329C>* Homo sapiens bone morphogenetic protein 2 (BMP2), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1es7 1 P12643 100.0 1e-82 X-RAY
 2000-10-07 CYS A:49 A:47 2.0 0.015 -120.4 88.8 2.0 0.015 0.0 HOH
 2.752
 O
 O
CYS C:49 C:547 2.0 0.015 -119.8 89.5 2.0 0.015 0.0 HOH
 2.961
 O
 O
2qj9 1 P12643 100.0 1e-82 X-RAY
 2008-01-15 CYS A:49 B:47 3.0 0.022 -118.1 83.2 3.0 0.022 0.0 HOH
 2.528
 O
 O
CYS B:49 A:47 4.0 0.03 -110.0 80.4 4.0 0.03 0.0 HOH
 2.694
 O
 O
2qja 1 P12643 100.0 1e-82 X-RAY
 2008-01-15 CYS A:49 A:47 4.0 0.03 -120.7 77.0 4.0 0.03 0.0 HOH
 3.098
 O
 O
CYS B:49 B:47 3.0 0.022 -114.6 86.6 3.0 0.022 0.0 HOH
 5.468
 O
 O
2qjb 1 P12643 100.0 1e-82 X-RAY
 2008-01-15 CYS A:49 A:47 2.0 0.015 -115.1 80.3 2.0 0.015 0.0 HOH
 6.103
 C
 O
CYS B:49 B:47 1.0 0.007 -113.5 88.1 1.0 0.007 0.0 HOH
 2.648
 O
 O
1rew 1 P12643 100.0 2e-82 X-RAY
 2004-05-04 CYS A:47 A:47 2.0 0.015 -110.6 87.3 2.0 0.015 0.0 HOH
 2.734
 O
 O
CYS B:47 B:47 4.0 0.03 -111.1 88.0 4.0 0.03 0.0 HOH
 2.877
 O
 O
2goo 1 P12643 100.0 2e-82 X-RAY
 2006-05-09 CYS A:47 A:47 2.0 0.015 -108.3 94.5 2.0 0.015 0.0 HOH
 2.793
 O
 O
CYS D:47 D:47 2.0 0.015 -103.0 100.2 2.0 0.015 0.0 HOH
 2.735
 O
 O
2h62 1 P12643 100.0 2e-82 X-RAY
 2007-04-10 CYS A:47 A:47 1.0 0.007 -122.3 77.2 1.0 0.007 0.0 HOH
 2.761
 O
 O
CYS B:47 B:47 3.0 0.022 -104.7 91.2 3.0 0.022 0.0 HOH
 2.753
 O
 O
3bmp 1 P12643 100.0 2e-82 X-RAY
 2000-03-12 CYS A:47 A:47 3.0 0.022 -103.1 90.3 3.0 0.022 0.0 HOH
 8.278
 SG
 O
4uhy 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 CYS A:47 A:329 2.0 0.015 -116.6 84.1 2.0 0.015 0.0
CYS B:47 B:329 2.0 0.015 -112.3 56.4 2.0 0.015 0.0
4uhz 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 CYS A:47 A:329 4.0 0.03 -116.0 63.1 4.0 0.03 0.0 SO4
SO4
SO4
 9.058
7.550
9.097
 N
N
N
 O2
O2
O3
4ui0 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 CYS A:47 A:329 5.0 0.037 -112.7 80.3 5.0 0.037 0.0 HOH
 3.171
 N
 O
CYS B:47 B:329 2.0 0.015 -107.2 79.0 2.0 0.015 0.0 HOH
 8.604
 CB
 O
4ui1 1 P12643 100.0 2e-82 X-RAY
 2015-05-06 CYS A:47 A:329 3.0 0.022 -118.2 72.1 3.0 0.022 0.0 CL
HOH
 8.581
2.630
 O
O
 CL
O
CYS B:47 B:329 3.0 0.022 -119.5 71.3 NA NA NA
4ui2 2 P12643 100.0 2e-82 X-RAY
 2015-05-06 CYS B:47 B:329 1.0 0.007 -124.9 71.5 1.0 0.007 0.0
2h64 1 P12643 98.25 8e-81 X-RAY
 2007-04-10 CYS A:47 A:47 1.0 0.007 -115.0 74.4 1.0 0.007 0.0 HOH
 2.488
 O
 O
3bk3 1 P12643 98.25 1e-80 X-RAY
 2008-05-27 CYS A:47 A:47 4.0 0.03 -108.4 100.7 4.0 0.03 0.0 HOH
 2.831
 O
 O
CYS B:47 B:47 4.0 0.03 -90.3 102.7 4.0 0.03 0.0 HOH
 2.942
 O
 O
6omn 1 P12643 100.0 1e-77 X-RAY
 2019-05-08 CYS A:41 E:47 13.0 0.096 -119.7 88.4 13.0 0.096 0.0 NAG
 9.394
 SG
 C8
CYS B:41 F:47 4.0 0.03 -114.1 87.3 4.0 0.03 0.0 NAG
HOH
 8.813
7.542
 SG
O
 C8
O
CYS C:41 G:47 4.0 0.03 -112.8 81.7 NA NA NA
CYS D:41 H:47 2.0 0.015 -106.2 97.4 NA NA NA
1reu 1 P12643 99.03 2e-75 X-RAY
 2004-05-04 CYS A:36 A:47 3.0 0.022 -82.8 106.3 3.0 0.022 0.0 HOH
 8.396
 SG
 O
4mid 1 ? 81.42 2e-68 X-RAY
 2014-05-07 CYS A:48 A:47 1.0 0.007 -117.0 83.3 1.0 0.007 0.0 HOH
 4.536
 SG
 O
6oml 1 ? 85.71 9e-65 X-RAY
 2019-05-15 CYS A:37 X:47 4.0 0.03 -88.5 67.9 4.0 0.03 0.0 HOH
 7.757
 SG
 O
CYS B:37 Y:47 1.0 0.007 -120.1 84.5 1.0 0.007 0.0 NAG
HOH
 8.070
3.422
 SG
N
 C8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p12643-f1 1 P12643 100.0 0.0 CYS A:329 A:329 2.0 0.015 -116.0 71.6