Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 41642623 . G A CCDS14012.1:NM_001278651.1:c.1748aCg>aTg_NP_001265580.1:p.583T>M Homo sapiens Ran GTPase activating protein 1 (RANGAP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d2m 3 P46060 100.0 6e-119 X-RAY
 2015-11-04 THR C:167 C:583 27.0 0.193 H -65.2 -34.4 27.0 0.193 0.0 HOH
 2.710
 OG1
 O
THR F:167 F:583 17.0 0.121 H -62.3 -45.8 NA NA NA
1z5s 3 P46060 100.0 7e-119 X-RAY
 2005-06-07 THR C:168 C:583 24.0 0.171 H -47.2 -49.7 24.0 0.171 0.0 HOH
 8.026
 CG2
 O
2grn 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:166 B:583 15.0 0.107 H -69.4 -42.5 15.0 0.107 0.0 HOH
 2.775
 OG1
 O
2gro 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:166 B:583 15.0 0.107 H -68.5 -42.2 15.0 0.107 0.0 HOH
 2.837
 OG1
 O
2grp 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:166 B:583 15.0 0.107 H -66.0 -43.9 15.0 0.107 0.0 HOH
 2.729
 OG1
 O
2grq 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:166 B:583 15.0 0.107 H -66.7 -43.2 15.0 0.107 0.0 HOH
 2.796
 OG1
 O
2grr 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:166 B:583 14.0 0.1 H -68.5 -42.5 14.0 0.1 0.0 HOH
 2.737
 OG1
 O
3uin 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 THR C:167 C:583 21.0 0.15 H -65.9 -46.5 21.0 0.15 0.0
3uio 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 THR C:167 C:583 7.0 0.05 H -64.8 -43.9 7.0 0.05 0.0 HOH
 6.125
 OG1
 O
3uip 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 THR C:167 C:583 17.0 0.121 H -59.9 -44.9 17.0 0.121 0.0 HOH
 3.265
 OG1
 O
2io2 3 P46060 99.41 1e-117 X-RAY
 2006-11-21 THR C:168 C:583 97.0 0.693 H -59.9 -47.2 25.0 0.179 0.514 C:P46060:0.064
C:P46060:0.45
2io3 3 P46060 99.41 1e-117 X-RAY
 2006-11-14 THR C:168 C:583 88.0 0.629 H -78.7 -34.7 12.0 0.086 0.543 C:P46060:0.479
C:P46060:0.086
2iy0 3 P46060 100.0 2e-107 X-RAY
 2006-08-07 THR C:152 C:583 12.0 0.086 H -59.8 -54.5 12.0 0.086 0.0
1kps 2 P46061 81.76 3e-98 X-RAY
 2002-02-13 THR B:167 B:585 26.0 0.186 H -58.5 -42.5 26.0 0.186 0.0 HOH
 3.025
 CB
 O
THR D:167 D:585 11.0 0.079 H -71.5 -50.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46060-f1 1 P46060 100.0 0.0 THR A:583 A:583 16.0 0.114 H -71.2 -48.3