Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 41642645 . C A CCDS14012.1:NM_001278651.1:c.1726Gcc>Tcc_NP_001265580.1:p.576A>S Homo sapiens Ran GTPase activating protein 1 (RANGAP1), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d2m 3 P46060 100.0 6e-119 X-RAY
 2015-11-04 ALA C:160 C:576 3.0 0.026 H -67.1 -38.9 3.0 0.026 0.0 EDO
HOH
 7.977
2.717
 HB2
O
 HO1
O
ALA F:160 F:576 2.0 0.017 H -61.2 -43.5 NA NA NA
1z5s 3 P46060 100.0 7e-119 X-RAY
 2005-06-07 ALA C:161 C:576 0.0 0.0 H -39.1 -43.9 0.0 0.0 0.0 HOH
 3.094
 N
 O
2grn 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:159 B:576 1.0 0.009 H -60.5 -39.9 1.0 0.009 0.0 HOH
 3.033
 N
 O
2gro 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:159 B:576 1.0 0.009 H -63.8 -37.7 1.0 0.009 0.0 HOH
 2.837
 O
 O
2grp 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:159 B:576 1.0 0.009 H -62.2 -40.4 1.0 0.009 0.0 HOH
 3.002
 N
 O
2grq 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:159 B:576 1.0 0.009 H -63.9 -37.3 1.0 0.009 0.0 HOH
 2.750
 O
 O
2grr 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:159 B:576 1.0 0.009 H -62.5 -37.5 1.0 0.009 0.0 HOH
 2.779
 O
 O
3uin 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 ALA C:160 C:576 2.0 0.017 H -54.6 -51.2 2.0 0.017 0.0 HOH
 8.088
 CB
 O
3uio 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 ALA C:160 C:576 1.0 0.009 H -61.3 -48.1 1.0 0.009 0.0 HOH
 2.968
 N
 O
3uip 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 ALA C:160 C:576 1.0 0.009 H -61.7 -40.1 1.0 0.009 0.0 HOH
 2.825
 O
 O
2io2 3 P46060 99.41 1e-117 X-RAY
 2006-11-21 ALA C:161 C:576 37.0 0.322 H -44.2 -61.5 1.0 0.009 0.313 C:P46060:0.313
2io3 3 P46060 99.41 1e-117 X-RAY
 2006-11-14 ALA C:161 C:576 35.0 0.304 H -56.0 -59.8 1.0 0.009 0.295 C:P46060:0.296
2iy0 3 P46060 100.0 2e-107 X-RAY
 2006-08-07 ALA C:145 C:576 0.0 0.0 H -57.0 -44.9 0.0 0.0 0.0
1kps 2 P46061 81.76 3e-98 X-RAY
 2002-02-13 ALA B:160 B:578 2.0 0.017 H -64.9 -41.9 2.0 0.017 0.0 SO4
HOH
 8.150
3.092
 CB
O
 O4
O
ALA D:160 D:578 2.0 0.017 H -53.8 -48.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46060-f1 1 P46060 100.0 0.0 ALA A:576 A:576 0.0 0.0 H -66.7 -41.9