Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 41645346 . G A CCDS14012.1:NM_001278651.1:c.1682gCg>gTg_NP_001265580.1:p.561A>V Homo sapiens Ran GTPase activating protein 1 (RANGAP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d2m 3 P46060 100.0 6e-119 X-RAY
 2015-11-04 ALA C:145 C:561 55.0 0.478 H -62.8 -50.0 9.0 0.078 0.4 A:P63279:0.4
 EDO
HOH
 9.869
2.629
 O
HA
 HO1
O
ALA F:145 F:561 56.0 0.487 H -65.5 -41.7 NA NA NA
1z5s 3 P46060 100.0 7e-119 X-RAY
 2005-06-07 ALA C:146 C:561 53.0 0.461 H -66.8 -43.8 13.0 0.113 0.348 A:P63279:0.348
 HOH
 7.784
 O
 O
2grn 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:144 B:561 51.0 0.443 H -58.6 -41.4 5.0 0.043 0.4 A:P63279:0.4
 HOH
 2.768
 O
 O
2gro 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:144 B:561 51.0 0.443 H -57.6 -41.7 5.0 0.043 0.4 A:P63279:0.4
 HOH
 2.736
 O
 O
2grp 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:144 B:561 48.0 0.417 H -58.0 -38.9 5.0 0.043 0.374 A:P63279:0.374
 HOH
 2.741
 O
 O
2grq 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:144 B:561 51.0 0.443 H -61.0 -40.5 5.0 0.043 0.4 A:P63279:0.4
 HOH
 2.759
 O
 O
2grr 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 ALA B:144 B:561 49.0 0.426 H -56.0 -40.6 4.0 0.035 0.391 A:P63279:0.391
 HOH
 2.686
 O
 O
3uin 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 ALA C:145 C:561 54.0 0.47 H -57.7 -36.9 14.0 0.122 0.348 A:P63279:0.348
 HOH
 2.594
 O
 O
3uio 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 ALA C:145 C:561 52.0 0.452 H -70.9 -36.7 14.0 0.122 0.33 A:P63279:0.33
 HOH
 2.838
 O
 O
3uip 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 ALA C:145 C:561 55.0 0.478 H -58.4 -45.8 9.0 0.078 0.4 A:P63279:0.4
 HOH
 2.814
 O
 O
2io2 3 P46060 99.41 1e-117 X-RAY
 2006-11-21 ALA C:146 C:561 48.0 0.417 H -52.6 -24.2 48.0 0.417 0.0
2io3 3 P46060 99.41 1e-117 X-RAY
 2006-11-14 ALA C:146 C:561 57.0 0.496 T -73.5 22.4 56.0 0.487 0.009 A:Q9HC62:0.009
2iy0 3 P46060 100.0 2e-107 X-RAY
 2006-08-07 ALA C:130 C:561 60.0 0.522 H -70.3 -11.1 60.0 0.522 0.0
1kps 2 P46061 81.76 3e-98 X-RAY
 2002-02-13 ALA B:145 B:563 51.0 0.443 H -50.4 -36.0 3.0 0.026 0.417 A:P63279:0.417
 HOH
 2.750
 O
 O
ALA D:145 D:563 47.0 0.409 H -53.9 -36.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46060-f1 1 P46060 100.0 0.0 ALA A:561 A:561 47.0 0.409 H -63.9 -26.5