Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 41645788 . G A CCDS14012.1:NM_001278651.1:c.1517tCc>tTc_NP_001265580.1:p.506S>F Homo sapiens Ran GTPase activating protein 1 (RANGAP1), transcript variant 1, mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d2m 3 P46060 100.0 6e-119 X-RAY
 2015-11-04 SER C:90 C:506 102.0 0.887 T -87.8 -19.1 102.0 0.887 0.0 HOH
 4.984
 O
 O
SER F:90 F:506 100.0 0.87 T -71.6 -34.6 NA NA NA
1z5s 3 P46060 100.0 7e-119 X-RAY
 2005-06-07 SER C:91 C:506 102.0 0.887 S -72.2 44.3 102.0 0.887 0.0 HOH
 4.196
 O
 O
2grn 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 SER B:89 B:506 97.0 0.843 T -96.3 -17.7 97.0 0.843 0.0 HOH
 2.730
 OG
 O
2gro 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 SER B:89 B:506 95.0 0.826 T -94.7 -21.1 95.0 0.826 0.0 HOH
 2.743
 OG
 O
2grp 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 SER B:89 B:506 93.0 0.809 T -101.7 -26.5 93.0 0.809 0.0 HOH
 2.546
 OG
 O
2grq 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 SER B:89 B:506 103.0 0.896 T -91.8 -18.3 103.0 0.896 0.0 HOH
 2.856
 OG
 O
2grr 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 SER B:89 B:506 99.0 0.861 T -93.8 -13.3 99.0 0.861 0.0 HOH
 2.789
 OG
 O
3uin 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 SER C:90 C:506 86.0 0.748 T -79.0 0.6 86.0 0.748 0.0 HOH
 4.380
 C
 O
3uio 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 SER C:90 C:506 91.0 0.791 T -83.6 1.1 91.0 0.791 0.0 HOH
 2.830
 O
 O
3uip 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 SER C:90 C:506 83.0 0.722 S -87.5 2.2 83.0 0.722 0.0 HOH
 2.788
 O
 O
2io2 3 P46060 99.41 1e-117 X-RAY
 2006-11-21 SER C:91 C:506 67.0 0.583 T -59.9 14.7 67.0 0.583 0.0
2io3 3 P46060 99.41 1e-117 X-RAY
 2006-11-14 SER C:91 C:506 66.0 0.574 T -64.5 -6.4 61.0 0.53 0.044 A:Q9HC62:0.043
2iy0 3 P46060 100.0 2e-107 X-RAY
 2006-08-07 SER C:75 C:506 80.0 0.696 T -91.4 -7.9 80.0 0.696 0.0
1kps 2 P46061 81.76 3e-98 X-RAY
 2002-02-13 SER B:90 B:508 97.0 0.843 T -60.7 -30.7 97.0 0.843 0.0 SO4
HOH
 9.426
2.663
 N
O
 O3
O
SER D:90 D:508 91.0 0.791 T -87.6 6.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46060-f1 1 P46060 100.0 0.0 SER A:506 A:506 85.0 0.739 T -91.6 -9.3