Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr22 41647106 . G A CCDS14012.1:NM_001278651.1:c.1388aCg>aTg_NP_001265580.1:p.463T>M Homo sapiens Ran GTPase activating protein 1 (RANGAP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5d2m 3 P46060 100.0 6e-119 X-RAY
 2015-11-04 THR C:47 C:463 16.0 0.114 T -88.6 30.5 16.0 0.114 0.0 HOH
 5.874
 N
 O
THR F:47 F:463 14.0 0.1 T -83.0 18.3 NA NA NA
1z5s 3 P46060 100.0 7e-119 X-RAY
 2005-06-07 THR C:48 C:463 28.0 0.2 -63.7 3.0 28.0 0.2 0.0 HOH
 2.749
 O
 O
2grn 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:46 B:463 20.0 0.143 T -71.9 2.2 20.0 0.143 0.0 HOH
 2.674
 O
 O
2gro 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:46 B:463 18.0 0.129 T -72.6 2.5 18.0 0.129 0.0 HOH
 2.424
 O
 O
2grp 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:46 B:463 17.0 0.121 T -71.1 2.6 17.0 0.121 0.0 HOH
 2.483
 OG1
 O
2grq 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:46 B:463 19.0 0.136 T -73.4 3.9 19.0 0.136 0.0 HOH
 2.498
 O
 O
2grr 2 P46060 99.41 4e-118 X-RAY
 2006-05-30 THR B:46 B:463 20.0 0.143 T -73.9 4.4 20.0 0.143 0.0 HOH
 2.558
 OG1
 O
3uin 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 THR C:47 C:463 12.0 0.086 T -96.3 3.6 12.0 0.086 0.0 HOH
 4.445
 OG1
 O
3uio 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 THR C:47 C:463 12.0 0.086 T -95.2 3.2 12.0 0.086 0.0 HOH
 7.069
 O
 O
3uip 3 P46060 100.0 5e-118 X-RAY
 2011-12-28 THR C:47 C:463 10.0 0.071 T -91.1 8.3 10.0 0.071 0.0 HOH
 2.482
 OG1
 O
2io2 3 P46060 99.41 1e-117 X-RAY
 2006-11-21 THR C:48 C:463 12.0 0.086 -97.7 22.3 12.0 0.086 0.0
2io3 3 P46060 99.41 1e-117 X-RAY
 2006-11-14 THR C:48 C:463 3.0 0.021 -86.9 43.6 3.0 0.021 0.0
2iy0 3 P46060 100.0 2e-107 X-RAY
 2006-08-07 THR C:32 C:463 14.0 0.1 T -72.5 9.5 14.0 0.1 0.0
1kps 2 P46061 81.76 3e-98 X-RAY
 2002-02-13 THR B:47 B:465 15.0 0.107 T -81.4 50.4 15.0 0.107 0.0 SO4
HOH
 5.290
2.964
 OG1
OG1
 O2
O
THR D:47 D:465 12.0 0.086 T -60.5 12.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p46060-f1 1 P46060 100.0 0.0 THR A:463 A:463 15.0 0.107 T -78.5 7.8