Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10183809 . G A CCDS2597.1:NM_000551.3:c.278gGc>gAc_NP_000542.1:p.93G>D Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 GLY A:113 A:93 10.0 0.133 S 69.0 14.9 10.0 0.133 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 GLY C:77 C:93 14.0 0.187 S 83.3 11.1 14.0 0.187 0.0
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 GLY C:51 C:93 19.0 0.253 S 79.5 11.4 19.0 0.253 0.0 HOH
2.638
O
O
GLY F:51 F:93 19.0 0.253 S 79.9 11.9 NA NA NA
GLY I:51 I:93 19.0 0.253 S 79.9 11.5 NA NA NA
GLY L:51 L:93 15.0 0.2 S 80.4 12.0 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 GLY C:42 C:93 15.0 0.2 S 72.4 23.3 15.0 0.2 0.0 HOH
6.276
O
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 GLY C:42 C:93 22.0 0.293 S 87.2 -4.0 22.0 0.293 0.0
GLY F:42 F:93 15.0 0.2 S 96.6 3.6 NA NA NA
GLY I:42 I:93 14.0 0.187 S 83.0 3.3 NA NA NA
GLY L:42 L:93 22.0 0.293 S 95.5 -13.0 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 GLY C:42 C:93 21.0 0.28 S 78.4 -10.8 21.0 0.28 0.0 HOH
4.331
O
O
GLY F:42 F:93 25.0 0.333 S 77.3 -9.1 NA NA NA
GLY I:42 I:93 25.0 0.333 S 78.6 -8.5 NA NA NA
GLY L:42 L:93 17.0 0.227 S 79.9 -9.6 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 GLY C:42 C:93 18.0 0.24 S 84.9 7.7 18.0 0.24 0.0 HOH
3.561
O
O
GLY F:42 F:93 21.0 0.28 S 83.1 10.4 NA NA NA
GLY I:42 I:93 18.0 0.24 S 85.0 4.8 NA NA NA
GLY L:42 L:93 18.0 0.24 S 85.0 6.4 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 GLY C:42 C:93 18.0 0.24 S 85.5 9.1 18.0 0.24 0.0 HOH
3.443
O
O
GLY F:42 F:93 18.0 0.24 S 83.8 10.5 NA NA NA
GLY I:42 I:93 18.0 0.24 S 87.0 9.7 NA NA NA
GLY L:42 L:93 19.0 0.253 S 83.7 11.8 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 17.0 0.227 S 85.4 2.0 17.0 0.227 0.0 HOH
3.421
O
O
GLY F:42 F:93 18.0 0.24 80.6 12.5 NA NA NA
GLY I:42 I:93 20.0 0.267 S 79.5 10.1 NA NA NA
GLY L:42 L:93 20.0 0.267 S 81.4 7.3 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 17.0 0.227 S 83.6 2.3 17.0 0.227 0.0 HOH
2.920
O
O
GLY F:42 F:93 16.0 0.213 85.6 14.1 NA NA NA
GLY I:42 I:93 20.0 0.267 S 82.8 5.5 NA NA NA
GLY L:42 L:93 18.0 0.24 S 86.8 2.8 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 19.0 0.253 S 82.4 5.6 19.0 0.253 0.0 HOH
3.275
O
O
GLY F:42 F:93 19.0 0.253 S 84.9 12.4 NA NA NA
GLY I:42 I:93 20.0 0.267 S 76.1 11.9 NA NA NA
GLY L:42 L:93 18.0 0.24 S 90.3 7.8 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 18.0 0.24 S 83.0 8.0 18.0 0.24 0.0 HOH
2.670
O
O
GLY F:42 F:93 18.0 0.24 S 81.1 14.6 NA NA NA
GLY I:42 I:93 18.0 0.24 S 80.6 10.3 NA NA NA
GLY L:42 L:93 16.0 0.213 S 82.1 11.9 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 20.0 0.267 S 82.6 8.6 20.0 0.267 0.0 HOH
3.568
O
O
GLY F:42 F:93 20.0 0.267 S 85.3 4.1 NA NA NA
GLY I:42 I:93 19.0 0.253 S 78.2 8.2 NA NA NA
GLY L:42 L:93 18.0 0.24 S 97.9 1.4 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 19.0 0.253 S 83.4 4.1 19.0 0.253 0.0 HOH
2.875
O
O
GLY F:42 F:93 21.0 0.28 S 79.4 13.4 NA NA NA
GLY I:42 I:93 19.0 0.253 S 82.4 5.9 NA NA NA
GLY L:42 L:93 18.0 0.24 S 83.9 10.0 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 19.0 0.253 S 74.6 10.9 19.0 0.253 0.0 HOH
3.039
O
O
GLY F:42 F:93 18.0 0.24 S 77.7 17.4 NA NA NA
GLY I:42 I:93 19.0 0.253 S 84.6 6.6 NA NA NA
GLY L:42 L:93 17.0 0.227 S 99.2 1.9 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 20.0 0.267 S 82.9 7.5 20.0 0.267 0.0 HOH
3.061
O
O
GLY F:42 F:93 19.0 0.253 S 89.2 10.1 NA NA NA
GLY I:42 I:93 19.0 0.253 S 86.6 8.4 NA NA NA
GLY L:42 L:93 16.0 0.213 S 87.8 7.1 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 19.0 0.253 S 82.2 6.3 19.0 0.253 0.0 HOH
3.734
O
O
GLY F:42 F:93 18.0 0.24 S 73.5 8.8 NA NA NA
GLY I:42 I:93 20.0 0.267 S 79.3 7.4 NA NA NA
GLY L:42 L:93 17.0 0.227 S 87.7 6.8 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:42 C:93 19.0 0.253 S 86.6 8.3 19.0 0.253 0.0 HOH
5.949
N
O
GLY F:42 F:93 20.0 0.267 S 77.3 16.3 NA NA NA
GLY I:42 I:93 18.0 0.24 S 86.9 8.1 NA NA NA
GLY L:42 L:93 18.0 0.24 S 90.8 7.0 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 GLY C:42 C:93 20.0 0.267 S 84.4 4.7 20.0 0.267 0.0 HOH
2.996
O
O
GLY F:42 F:93 20.0 0.267 S 77.2 9.5 NA NA NA
GLY I:42 I:93 20.0 0.267 S 88.8 6.6 NA NA NA
GLY L:42 L:93 20.0 0.267 S 91.8 6.3 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 18.0 0.24 S 79.2 7.1 18.0 0.24 0.0 HOH
2.744
O
O
GLY F:42 F:93 20.0 0.267 S 71.9 14.6 NA NA NA
GLY I:42 I:93 18.0 0.24 S 83.6 8.2 NA NA NA
GLY L:42 L:93 18.0 0.24 S 84.5 7.7 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 19.0 0.253 S 83.5 4.2 19.0 0.253 0.0 HOH
2.787
O
O
GLY F:42 F:93 18.0 0.24 S 75.9 14.2 NA NA NA
GLY I:42 I:93 18.0 0.24 S 81.6 7.7 NA NA NA
GLY L:42 L:93 18.0 0.24 S 88.6 4.8 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 18.0 0.24 S 83.1 6.7 18.0 0.24 0.0 HOH
2.902
O
O
GLY F:42 F:93 18.0 0.24 S 73.0 14.8 NA NA NA
GLY I:42 I:93 17.0 0.227 S 81.7 8.8 NA NA NA
GLY L:42 L:93 19.0 0.253 S 85.3 11.7 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 21.0 0.28 S 96.0 -13.0 21.0 0.28 0.0 HOH
3.651
O
O
GLY F:42 F:93 21.0 0.28 S 69.7 24.3 NA NA NA
GLY I:42 I:93 26.0 0.347 S 67.7 12.8 NA NA NA
GLY L:42 L:93 20.0 0.267 S 99.0 3.0 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 18.0 0.24 93.9 1.0 18.0 0.24 0.0 HOH
4.131
O
O
GLY F:42 F:93 21.0 0.28 S 84.3 13.7 NA NA NA
GLY I:42 I:93 19.0 0.253 S 94.3 10.7 NA NA NA
GLY L:42 L:93 20.0 0.267 S 93.8 2.7 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 19.0 0.253 S 85.5 6.0 19.0 0.253 0.0 HOH
3.073
O
O
GLY F:42 F:93 20.0 0.267 S 87.0 13.1 NA NA NA
GLY I:42 I:93 21.0 0.28 S 87.8 3.8 NA NA NA
GLY L:42 L:93 18.0 0.24 S 93.8 6.7 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 18.0 0.24 S 83.5 7.0 18.0 0.24 0.0 HOH
2.884
O
O
GLY F:42 F:93 20.0 0.267 S 80.0 9.0 NA NA NA
GLY I:42 I:93 18.0 0.24 S 84.4 10.4 NA NA NA
GLY L:42 L:93 20.0 0.267 S 86.8 11.9 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:42 C:93 19.0 0.253 S 79.2 9.0 19.0 0.253 0.0 HOH
2.836
O
O
GLY F:42 F:93 19.0 0.253 S 73.9 16.9 NA NA NA
GLY I:42 I:93 19.0 0.253 S 84.2 9.3 NA NA NA
GLY L:42 L:93 20.0 0.267 S 89.5 6.7 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 GLY D:42 D:93 12.0 0.16 S 74.0 8.3 12.0 0.16 0.0 HOH
9.619
O
O
GLY H:42 H:93 12.0 0.16 S 73.4 8.6 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 GLY A:42 V:93 13.0 0.173 S 76.8 9.0 13.0 0.173 0.0 HOH
5.814
HA3
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 GLY C:42 C:93 21.0 0.28 S 87.0 4.0 21.0 0.28 0.0 HOH
3.778
O
O
GLY F:42 F:93 21.0 0.28 S 76.7 13.2 NA NA NA
GLY I:42 I:93 19.0 0.253 S 88.7 8.5 NA NA NA
GLY L:42 L:93 21.0 0.28 S 92.6 4.2 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 GLY C:42 C:93 18.0 0.24 S 83.6 4.4 18.0 0.24 0.0 HOH
2.907
O
O
GLY F:42 F:93 20.0 0.267 S 73.8 13.4 NA NA NA
GLY I:42 I:93 19.0 0.253 S 79.4 5.8 NA NA NA
GLY L:42 L:93 19.0 0.253 S 83.1 11.0 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 GLY C:42 C:93 21.0 0.28 S 80.5 8.5 21.0 0.28 0.0 HOH
2.829
O
O
GLY F:42 F:93 21.0 0.28 S 79.8 9.3 NA NA NA
GLY L:42 L:93 20.0 0.267 S 82.0 8.1 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 GLY I:42 I:93 19.0 0.253 S 81.4 8.6 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 GLY C:42 C:93 21.0 0.28 S 88.0 -1.4 21.0 0.28 0.0 HOH
5.376
O
O
GLY F:42 F:93 24.0 0.32 S 86.1 -5.1 NA NA NA
GLY I:42 I:93 21.0 0.28 S 86.7 -1.1 NA NA NA
GLY L:42 L:93 20.0 0.267 S 88.7 -0.8 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 GLY C:42 C:93 20.0 0.267 S 85.8 3.8 20.0 0.267 0.0 HOH
5.854
N
O
GLY F:42 F:93 17.0 0.227 S 82.8 0.9 NA NA NA
GLY I:42 I:93 22.0 0.293 S 83.0 2.5 NA NA NA
GLY L:42 L:93 15.0 0.2 S 86.2 2.5 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 GLY B:42 B:93 11.0 0.147 S 73.8 19.8 11.0 0.147 0.0 HOH
2.665
O
O
GLY F:42 F:93 14.0 0.187 S 73.9 19.4 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 GLY B:42 B:93 10.0 0.133 S 75.1 14.4 10.0 0.133 0.0 HOH
2.679
O
O
GLY F:42 F:93 10.0 0.133 S 75.6 14.1 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 GLY D:42 D:93 17.0 0.227 S 125.4 -4.0 17.0 0.227 0.0
GLY H:42 H:93 17.0 0.227 S 125.5 -4.3 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 GLY D:42 L:93 13.0 0.173 S 85.9 9.4 13.0 0.173 0.0 HOH
5.652
N
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 GLY C:42 L:93 12.0 0.16 S 79.3 3.3 12.0 0.16 0.0 HOH
6.720
C
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 GLY C:43 C:93 20.0 0.267 S 135.8 -37.8 20.0 0.267 0.0
GLY F:43 F:93 19.0 0.253 S 91.6 -2.7 NA NA NA
GLY I:43 I:93 17.0 0.227 S 86.7 -9.8 NA NA NA
GLY L:43 L:93 22.0 0.293 S 93.6 -18.9 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 GLY C:43 C:93 19.0 0.253 S 109.2 5.4 19.0 0.253 0.0
GLY F:43 F:93 18.0 0.24 S 87.7 5.7 NA NA NA
GLY I:43 I:93 16.0 0.213 S 86.6 3.5 NA NA NA
GLY L:43 L:93 20.0 0.267 S 84.8 -13.7 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 GLY C:43 C:93 24.0 0.32 S 151.9 -1.4 24.0 0.32 0.0
GLY F:43 F:93 19.0 0.253 S 88.5 -3.2 NA NA NA
GLY I:43 I:93 15.0 0.2 S 90.0 9.4 NA NA NA
GLY L:43 L:93 20.0 0.267 S 100.6 -12.5 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 GLY C:43 C:93 17.0 0.227 S 92.7 -0.6 17.0 0.227 0.0 HOH
3.325
O
O
GLY F:43 F:93 18.0 0.24 S 85.5 -6.9 NA NA NA
GLY I:43 I:93 17.0 0.227 S 75.0 19.4 NA NA NA
GLY L:43 L:93 21.0 0.28 S 102.3 -7.7 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 GLY D:43 V:93 14.0 0.187 S 74.7 12.9 14.0 0.187 0.0 HOH
2.699
O
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 GLY C:43 C:93 19.0 0.253 S 104.2 0.1 19.0 0.253 0.0 HOH
3.777
O
O
GLY F:43 F:93 20.0 0.267 S 100.1 2.9 NA NA NA
GLY I:43 I:93 18.0 0.24 S 97.0 4.5 NA NA NA
GLY L:43 L:93 18.0 0.24 S 100.0 4.7 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 GLY D:43 V:93 11.0 0.147 S 77.3 13.3 11.0 0.147 0.0 HOH
2.850
O
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 GLY C:40 V:93 9.0 0.12 S 69.4 15.7 9.0 0.12 0.0 HOH
2.797
O
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 GLY C:40 C:93 16.0 0.213 S 90.0 -0.5 16.0 0.213 0.0 HOH
3.968
O
O
GLY F:40 F:93 17.0 0.227 S 88.2 1.0 NA NA NA
GLY I:40 I:93 15.0 0.2 S 89.2 1.6 NA NA NA
GLY L:40 L:93 17.0 0.227 S 90.0 1.4 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 GLY B:40 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 GLY C:40 C:93 14.0 0.187 S 74.7 13.7 14.0 0.187 0.0 HOH
2.680
O
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 GLY D:40 V:93 8.0 0.107 S 75.0 13.5 8.0 0.107 0.0 HOH
2.809
O
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 GLY D:40 V:93 15.0 0.2 S 77.5 13.2 15.0 0.2 0.0 HOH
2.612
O
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 GLY I:40 V:93 11.0 0.147 94.3 9.5 11.0 0.147 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 GLY C:55 C:93 13.0 0.173 S 80.3 2.7 13.0 0.173 0.0 HOH
2.836
O
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 GLY A:43 A:93 12.0 0.16 S 82.1 7.4 12.0 0.16 0.0
GLY E:43 E:93 14.0 0.187 S 80.7 9.2 NA NA NA
GLY I:43 I:93 13.0 0.173 S 81.7 6.9 NA NA NA
GLY M:43 M:93 14.0 0.187 S 79.5 9.9 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 GLY A:35 AAA:93 12.0 0.16 S 73.1 13.3 12.0 0.16 0.0 EDO
IOD
IOD
HOH
3.708
8.509
6.764
2.702
O
N
N
O
C1
I
I
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 GLY A:35 AAA:93 11.0 0.147 S 67.4 13.4 11.0 0.147 0.0 EDO
HOH
8.098
2.722
N
O
O1
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLY C:42 C:93 17.0 0.227 S 76.0 3.0 17.0 0.227 0.0 HOH
6.910
O
O
GLY F:42 F:93 19.0 0.253 S 75.1 13.5 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLY C:42 C:93 20.0 0.267 S 78.3 10.2 20.0 0.267 0.0 HOH
2.968
O
O
GLY F:42 F:93 18.0 0.24 S 71.4 11.3 NA NA NA
GLY I:42 I:93 23.0 0.307 S 74.6 9.3 NA NA NA
GLY L:42 L:93 21.0 0.28 S 94.5 2.2 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLY C:42 C:93 21.0 0.28 S 84.8 3.4 21.0 0.28 0.0 HOH
3.962
O
O
GLY F:42 F:93 23.0 0.307 S 74.7 12.5 NA NA NA
GLY I:42 I:93 23.0 0.307 S 72.7 18.3 NA NA NA
GLY L:42 L:93 20.0 0.267 S 92.4 -0.4 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 GLY B:33 B:93 10.0 0.133 S 70.2 17.8 10.0 0.133 0.0 FWZ
HOH
9.655
3.283
H
O
H7
O
GLY F:33 F:93 10.0 0.133 S 70.5 18.0 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 GLY L:34 V:93 35.0 0.467 S 61.0 26.0 35.0 0.467 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 GLY A:93 A:93 12.0 0.16 S 79.2 7.5