Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188215 . A C CCDS2597.1:NM_000551.3:c.358Aga>Cga_NP_000542.1:p.120R>R Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 ARG A:140 A:120 8.0 0.036 E -137.4 167.6 8.0 0.036 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 ARG C:104 C:120 14.0 0.062 E -137.2 154.3 14.0 0.062 0.0
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 ARG C:78 C:120 6.0 0.027 E -130.0 162.0 6.0 0.027 0.0 HOH
3.494
NH1
O
ARG F:78 F:120 9.0 0.04 E -128.9 161.9 NA NA NA
ARG I:78 I:120 2.0 0.009 E -138.1 163.8 NA NA NA
ARG L:78 L:120 1.0 0.004 E -137.7 163.0 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 ARG C:69 C:120 1.0 0.004 E -137.1 165.2 1.0 0.004 0.0 HOH
2.907
NH2
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 ARG C:69 C:120 0.0 0.0 E -145.4 162.9 0.0 0.0 0.0
ARG F:69 F:120 3.0 0.013 E -137.8 152.9 NA NA NA
ARG I:69 I:120 1.0 0.004 E -107.3 156.7 NA NA NA
ARG L:69 L:120 1.0 0.004 E -122.5 157.5 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 ARG C:69 C:120 13.0 0.058 E -128.7 164.4 13.0 0.058 0.0 HOH
3.532
NH1
O
ARG F:69 F:120 2.0 0.009 E -131.4 164.2 NA NA NA
ARG I:69 I:120 5.0 0.022 E -129.2 163.7 NA NA NA
ARG L:69 L:120 6.0 0.027 E -130.8 168.7 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ARG C:69 C:120 2.0 0.009 E -132.4 160.7 2.0 0.009 0.0 HOH
3.598
NH1
O
ARG F:69 F:120 15.0 0.067 E -132.0 160.2 NA NA NA
ARG I:69 I:120 2.0 0.009 E -130.0 163.1 NA NA NA
ARG L:69 L:120 4.0 0.018 E -132.4 161.6 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ARG C:69 C:120 3.0 0.013 E -130.7 158.5 3.0 0.013 0.0 HOH
3.336
NH1
O
ARG F:69 F:120 4.0 0.018 E -130.2 166.6 NA NA NA
ARG I:69 I:120 0.0 0.0 E -130.4 161.8 NA NA NA
ARG L:69 L:120 0.0 0.0 E -131.6 161.3 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 6.0 0.027 E -130.8 159.8 6.0 0.027 0.0 HOH
2.126
NH1
O
ARG F:69 F:120 7.0 0.031 E -135.9 161.3 NA NA NA
ARG I:69 I:120 6.0 0.027 E -138.6 165.6 NA NA NA
ARG L:69 L:120 5.0 0.022 E -138.1 160.8 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 6.0 0.027 E -130.4 161.5 6.0 0.027 0.0 HOH
2.206
NH1
O
ARG F:69 F:120 13.0 0.058 E -132.0 156.7 NA NA NA
ARG I:69 I:120 10.0 0.044 E -133.8 160.1 NA NA NA
ARG L:69 L:120 7.0 0.031 E -136.9 158.8 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 3.0 0.013 E -131.4 168.1 3.0 0.013 0.0 HOH
5.057
CD
O
ARG F:69 F:120 6.0 0.027 E -130.8 164.0 NA NA NA
ARG I:69 I:120 3.0 0.013 E -143.3 161.9 NA NA NA
ARG L:69 L:120 1.0 0.004 E -138.4 162.0 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 2.0 0.009 E -135.5 157.9 2.0 0.009 0.0 HOH
2.946
NH1
O
ARG F:69 F:120 3.0 0.013 E -128.3 157.1 NA NA NA
ARG I:69 I:120 10.0 0.044 E -138.1 161.1 NA NA NA
ARG L:69 L:120 9.0 0.04 E -130.7 162.6 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 4.0 0.018 E -138.6 164.5 4.0 0.018 0.0 HOH
2.499
NH1
O
ARG F:69 F:120 11.0 0.049 E -135.6 164.4 NA NA NA
ARG I:69 I:120 12.0 0.053 E -140.6 161.7 NA NA NA
ARG L:69 L:120 8.0 0.036 E -139.0 157.8 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 8.0 0.036 E -131.5 157.0 8.0 0.036 0.0 HOH
2.441
NH1
O
ARG F:69 F:120 9.0 0.04 E -129.0 159.9 NA NA NA
ARG I:69 I:120 7.0 0.031 E -137.3 162.5 NA NA NA
ARG L:69 L:120 4.0 0.018 E -136.4 158.8 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 7.0 0.031 E -131.8 166.8 7.0 0.031 0.0 HOH
2.525
NH1
O
ARG F:69 F:120 7.0 0.031 E -131.5 162.4 NA NA NA
ARG I:69 I:120 5.0 0.022 E -137.6 163.1 NA NA NA
ARG L:69 L:120 5.0 0.022 E -137.4 158.6 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 8.0 0.036 E -135.4 159.3 8.0 0.036 0.0 HOH
2.269
NH1
O
ARG F:69 F:120 6.0 0.027 E -133.9 157.3 NA NA NA
ARG I:69 I:120 9.0 0.04 E -131.6 158.9 NA NA NA
ARG L:69 L:120 9.0 0.04 E -133.8 162.8 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 4.0 0.018 E -137.9 158.2 4.0 0.018 0.0 HOH
2.648
NH1
O
ARG F:69 F:120 12.0 0.053 E -142.6 157.9 NA NA NA
ARG I:69 I:120 6.0 0.027 E -128.1 166.1 NA NA NA
ARG L:69 L:120 9.0 0.04 E -130.6 161.8 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ARG C:69 C:120 5.0 0.022 E -135.4 157.3 5.0 0.022 0.0 HOH
2.311
NH1
O
ARG F:69 F:120 7.0 0.031 E -134.2 158.3 NA NA NA
ARG I:69 I:120 5.0 0.022 E -125.7 163.9 NA NA NA
ARG L:69 L:120 7.0 0.031 E -132.5 162.8 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 ARG C:69 C:120 9.0 0.04 E -136.2 160.9 9.0 0.04 0.0 HOH
3.519
NH2
O
ARG F:69 F:120 5.0 0.022 E -136.1 161.6 NA NA NA
ARG I:69 I:120 12.0 0.053 E -137.0 162.0 NA NA NA
ARG L:69 L:120 12.0 0.053 E -141.1 160.5 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 7.0 0.031 E -132.5 158.3 7.0 0.031 0.0 HOH
2.921
NH1
O
ARG F:69 F:120 11.0 0.049 E -133.0 161.9 NA NA NA
ARG I:69 I:120 10.0 0.044 E -138.6 159.6 NA NA NA
ARG L:69 L:120 10.0 0.044 E -135.9 159.0 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 7.0 0.031 E -132.3 159.4 7.0 0.031 0.0 HOH
3.120
NH1
O
ARG F:69 F:120 9.0 0.04 E -128.3 162.8 NA NA NA
ARG I:69 I:120 10.0 0.044 E -136.3 162.1 NA NA NA
ARG L:69 L:120 11.0 0.049 E -134.2 162.5 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 8.0 0.036 E -131.1 159.1 8.0 0.036 0.0 HOH
3.079
NH1
O
ARG F:69 F:120 12.0 0.053 E -130.7 160.9 NA NA NA
ARG I:69 I:120 12.0 0.053 E -137.4 161.4 NA NA NA
ARG L:69 L:120 11.0 0.049 E -134.7 161.4 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 3.0 0.013 E -135.4 154.2 3.0 0.013 0.0 HOH
5.110
NH2
O
ARG F:69 F:120 6.0 0.027 E -127.0 163.7 NA NA NA
ARG I:69 I:120 15.0 0.067 E -139.0 164.1 NA NA NA
ARG L:69 L:120 3.0 0.013 E -135.4 154.9 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 4.0 0.018 E -141.2 157.1 4.0 0.018 0.0 HOH
4.910
NH2
O
ARG F:69 F:120 8.0 0.036 E -138.2 166.0 NA NA NA
ARG I:69 I:120 9.0 0.04 E -131.3 167.6 NA NA NA
ARG L:69 L:120 7.0 0.031 E -138.0 160.4 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 12.0 0.053 E -137.3 160.2 12.0 0.053 0.0 HOH
2.400
NH1
O
ARG F:69 F:120 12.0 0.053 E -138.3 161.6 NA NA NA
ARG I:69 I:120 13.0 0.058 E -137.7 159.8 NA NA NA
ARG L:69 L:120 13.0 0.058 E -136.8 162.4 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 11.0 0.049 E -133.6 158.3 11.0 0.049 0.0 HOH
2.395
NH2
O
ARG F:69 F:120 11.0 0.049 E -134.5 159.7 NA NA NA
ARG I:69 I:120 17.0 0.076 E -136.3 160.9 NA NA NA
ARG L:69 L:120 15.0 0.067 E -138.0 159.7 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ARG C:69 C:120 13.0 0.058 E -132.8 161.4 13.0 0.058 0.0 HOH
3.450
NH1
O
ARG F:69 F:120 12.0 0.053 E -132.4 161.2 NA NA NA
ARG I:69 I:120 15.0 0.067 E -134.5 161.4 NA NA NA
ARG L:69 L:120 13.0 0.058 E -136.7 162.6 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 ARG D:69 D:120 11.0 0.049 E -139.0 161.2 11.0 0.049 0.0 HOH
2.810
NH1
O
ARG H:69 H:120 11.0 0.049 E -139.2 160.9 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 ARG A:69 V:120 2.0 0.009 E -136.5 155.3 2.0 0.009 0.0 HOH
1.987
HE
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ARG C:69 C:120 4.0 0.018 E -139.4 159.8 4.0 0.018 0.0 HOH
5.173
N
O
ARG F:69 F:120 6.0 0.027 E -134.6 167.5 NA NA NA
ARG I:69 I:120 6.0 0.027 E -138.4 164.4 NA NA NA
ARG L:69 L:120 4.0 0.018 E -138.2 158.8 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ARG C:69 C:120 5.0 0.022 E -130.8 157.6 5.0 0.022 0.0 HOH
3.282
NH1
O
ARG F:69 F:120 10.0 0.044 E -134.2 164.7 NA NA NA
ARG I:69 I:120 11.0 0.049 E -139.4 160.6 NA NA NA
ARG L:69 L:120 8.0 0.036 E -136.1 161.5 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ARG C:69 C:120 4.0 0.018 E -138.3 155.2 4.0 0.018 0.0 HOH
2.574
NE
O
ARG F:69 F:120 6.0 0.027 E -126.1 160.7 NA NA NA
ARG L:69 L:120 8.0 0.036 E -133.9 160.4 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 ARG I:69 I:120 3.0 0.013 E -131.1 156.5 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 ARG C:69 C:120 16.0 0.071 E -140.0 153.7 16.0 0.071 0.0 HOH
6.782
NH2
O
ARG F:69 F:120 5.0 0.022 E -139.9 151.3 NA NA NA
ARG I:69 I:120 18.0 0.08 E -132.8 156.6 NA NA NA
ARG L:69 L:120 14.0 0.062 E -138.6 156.3 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ARG C:69 C:120 1.0 0.004 E -147.2 157.6 1.0 0.004 0.0 HOH
3.187
NH1
O
ARG F:69 F:120 5.0 0.022 E -134.4 151.8 NA NA NA
ARG I:69 I:120 2.0 0.009 E -137.3 154.0 NA NA NA
ARG L:69 L:120 12.0 0.053 E -142.4 159.0 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ARG B:69 B:120 9.0 0.04 E -129.0 167.2 9.0 0.04 0.0 HOH
2.979
NH1
O
ARG F:69 F:120 10.0 0.044 E -128.9 167.7 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ARG B:69 B:120 11.0 0.049 E -133.5 164.2 11.0 0.049 0.0 EDO
HOH
8.716
2.737
CB
NH1
C1
O
ARG F:69 F:120 11.0 0.049 E -133.3 163.8 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 ARG D:69 D:120 12.0 0.053 E -134.9 174.8 12.0 0.053 0.0
ARG H:69 H:120 13.0 0.058 E -134.8 175.0 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 ARG D:69 L:120 9.0 0.04 E -130.1 166.2 9.0 0.04 0.0 NA
HOH
9.442
2.701
C
NH1
NA
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 ARG C:69 L:120 7.0 0.031 E -135.4 159.9 7.0 0.031 0.0 HOH
2.614
NH1
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ARG C:70 C:120 18.0 0.08 E -163.8 164.4 18.0 0.08 0.0
ARG F:70 F:120 4.0 0.018 E -136.0 152.5 NA NA NA
ARG I:70 I:120 4.0 0.018 E -160.9 138.4 NA NA NA
ARG L:70 L:120 4.0 0.018 E -139.0 156.1 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ARG C:70 C:120 13.0 0.058 E -141.1 156.5 13.0 0.058 0.0 HOH
6.413
NH1
O
ARG F:70 F:120 1.0 0.004 E -141.1 140.1 NA NA NA
ARG I:70 I:120 0.0 0.0 E -107.9 163.8 NA NA NA
ARG L:70 L:120 2.0 0.009 E -121.9 159.5 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ARG C:70 C:120 16.0 0.071 E -145.4 162.3 16.0 0.071 0.0
ARG F:70 F:120 4.0 0.018 E -139.8 158.9 NA NA NA
ARG I:70 I:120 1.0 0.004 E -125.7 164.4 NA NA NA
ARG L:70 L:120 0.0 0.0 E -134.7 156.5 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ARG C:70 C:120 13.0 0.058 E -142.9 161.9 13.0 0.058 0.0 HOH
3.319
NH2
O
ARG F:70 F:120 1.0 0.004 E -135.1 153.6 NA NA NA
ARG I:70 I:120 3.0 0.013 E -136.9 156.2 NA NA NA
ARG L:70 L:120 2.0 0.009 E -137.5 167.1 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 ARG D:70 V:120 1.0 0.004 E -141.4 160.0 1.0 0.004 0.0 HOH
2.899
NH1
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 ARG C:70 C:120 2.0 0.009 E -137.5 161.7 2.0 0.009 0.0 HOH
6.970
CZ
O
ARG F:70 F:120 13.0 0.058 E -134.2 155.4 NA NA NA
ARG I:70 I:120 1.0 0.004 E -130.9 163.9 NA NA NA
ARG L:70 L:120 1.0 0.004 E -136.3 161.9 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 ARG D:70 V:120 17.0 0.076 E -137.6 160.7 17.0 0.076 0.0 F4K
HOH
3.220
3.765
NH1
NH2
N09
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 ARG C:67 V:120 0.0 0.0 E -139.3 168.0 0.0 0.0 0.0 HOH
2.758
NH2
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 ARG C:67 C:120 4.0 0.018 E -142.1 168.1 4.0 0.018 0.0 HOH
3.418
NH2
O
ARG F:67 F:120 2.0 0.009 E -140.1 167.6 NA NA NA
ARG I:67 I:120 3.0 0.013 E -138.8 166.9 NA NA NA
ARG L:67 L:120 5.0 0.022 E -142.0 166.7 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 ARG B:67 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 ARG C:67 C:120 8.0 0.036 E -136.5 157.5 8.0 0.036 0.0 HOH
4.424
NH2
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ARG D:67 V:120 7.0 0.031 E -130.9 159.8 7.0 0.031 0.0 GOL
HOH
8.922
1.938
C
HH11
HO3
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ARG D:67 V:120 6.0 0.027 E -133.1 162.7 6.0 0.027 0.0 HOH
1.912
HH11
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 ARG I:67 V:120 12.0 0.053 E -142.8 167.3 12.0 0.053 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 ARG C:82 C:120 1.0 0.004 E -128.1 161.7 1.0 0.004 0.0 HOH
7.160
O
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 ARG A:70 A:120 0.0 0.0 E -145.5 152.5 0.0 0.0 0.0
ARG E:70 E:120 1.0 0.004 E -144.4 152.6 NA NA NA
ARG I:70 I:120 3.0 0.013 E -146.0 153.4 NA NA NA
ARG M:70 M:120 0.0 0.0 E -144.4 152.7 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 ARG A:62 AAA:120 8.0 0.036 E -128.3 157.6 8.0 0.036 0.0 GOL
GOL
IOD
IOD
HOH
4.942
6.775
4.168
9.714
2.727
NH2
O
CG
NH1
NH2
C3
O2
I
I
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 ARG A:62 AAA:120 6.0 0.027 E -135.5 154.2 6.0 0.027 0.0 HOH
2.454
NH2
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ARG C:69 C:120 15.0 0.067 E -132.6 158.2 15.0 0.067 0.0 HOH
7.078
NH2
O
ARG F:69 F:120 4.0 0.018 E -138.5 163.0 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ARG C:69 C:120 3.0 0.013 E -132.6 162.4 3.0 0.013 0.0 HOH
3.263
NH1
O
ARG F:69 F:120 9.0 0.04 E -132.8 163.6 NA NA NA
ARG I:69 I:120 5.0 0.022 E -137.4 161.9 NA NA NA
ARG L:69 L:120 7.0 0.031 E -137.5 164.0 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ARG C:69 C:120 2.0 0.009 E -132.4 162.6 2.0 0.009 0.0 HOH
3.659
NH2
O
ARG F:69 F:120 4.0 0.018 E -132.2 167.3 NA NA NA
ARG I:69 I:120 7.0 0.031 E -135.9 165.0 NA NA NA
ARG L:69 L:120 13.0 0.058 E -133.8 157.3 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 ARG B:60 B:120 13.0 0.058 E -133.9 169.5 13.0 0.058 0.0 FWZ
HOH
9.350
1.910
H
HH11
H16
O
ARG F:60 F:120 11.0 0.049 E -132.8 167.8 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 ARG L:61 V:120 3.0 0.013 E -75.5 124.6 3.0 0.013 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 ARG A:120 A:120 7.0 0.031 E -125.4 155.9