Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188233 . G A CCDS2597.1:NM_000551.3:c.376Gat>Aat_NP_000542.1:p.126D>N Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 ASP A:146 A:126 8.0 0.053 -59.8 144.0 8.0 0.053 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 ASP C:110 C:126 8.0 0.053 -58.1 132.1 8.0 0.053 0.0
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 ASP C:84 C:126 6.0 0.04 -58.6 140.3 6.0 0.04 0.0 HOH
2.712
OD2
O
ASP F:84 F:126 7.0 0.047 -58.1 141.0 NA NA NA
ASP I:84 I:126 7.0 0.047 -58.0 140.3 NA NA NA
ASP L:84 L:126 6.0 0.04 -57.7 140.3 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 ASP C:75 C:126 5.0 0.033 -57.9 145.6 5.0 0.033 0.0 HOH
2.631
OD1
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 ASP C:75 C:126 6.0 0.04 -44.9 143.0 6.0 0.04 0.0 HOH
6.582
OD2
O
ASP F:75 F:126 7.0 0.047 -46.5 141.0 NA NA NA
ASP I:75 I:126 11.0 0.073 -38.0 137.7 NA NA NA
ASP L:75 L:126 6.0 0.04 -46.5 136.1 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 ASP C:75 C:126 7.0 0.047 -57.0 141.6 7.0 0.047 0.0 HOH
4.701
OD2
O
ASP F:75 F:126 7.0 0.047 -58.2 142.9 NA NA NA
ASP I:75 I:126 6.0 0.04 -58.9 141.6 NA NA NA
ASP L:75 L:126 7.0 0.047 -57.9 142.6 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ASP C:75 C:126 7.0 0.047 -57.4 137.4 7.0 0.047 0.0 ACT
HOH
5.265
2.689
OD2
OD2
O
O
ASP F:75 F:126 7.0 0.047 -56.4 137.6 NA NA NA
ASP I:75 I:126 6.0 0.04 -58.8 138.9 NA NA NA
ASP L:75 L:126 6.0 0.04 -59.0 137.6 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ASP C:75 C:126 9.0 0.06 -59.9 139.2 9.0 0.06 0.0 HOH
2.649
OD1
O
ASP F:75 F:126 6.0 0.04 -61.4 141.3 NA NA NA
ASP I:75 I:126 6.0 0.04 -61.6 139.4 NA NA NA
ASP L:75 L:126 5.0 0.033 -62.7 139.8 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 7.0 0.047 -57.8 146.2 7.0 0.047 0.0 HOH
2.594
OD1
O
ASP F:75 F:126 7.0 0.047 -51.2 143.0 NA NA NA
ASP I:75 I:126 7.0 0.047 -54.4 144.1 NA NA NA
ASP L:75 L:126 6.0 0.04 -54.2 144.0 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 7.0 0.047 -54.1 145.1 7.0 0.047 0.0 HOH
2.641
OD2
O
ASP F:75 F:126 8.0 0.053 -53.6 145.4 NA NA NA
ASP I:75 I:126 7.0 0.047 -53.0 143.5 NA NA NA
ASP L:75 L:126 7.0 0.047 -54.5 143.9 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 5.0 0.033 -51.6 140.4 5.0 0.033 0.0 HOH
2.766
OD1
O
ASP F:75 F:126 5.0 0.033 -51.6 148.3 NA NA NA
ASP I:75 I:126 6.0 0.04 -54.8 137.6 NA NA NA
ASP L:75 L:126 6.0 0.04 -51.8 134.1 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 6.0 0.04 -53.0 139.6 6.0 0.04 0.0 HOH
2.520
OD1
O
ASP F:75 F:126 8.0 0.053 -54.7 139.9 NA NA NA
ASP I:75 I:126 6.0 0.04 -50.3 137.6 NA NA NA
ASP L:75 L:126 5.0 0.033 -54.2 142.6 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 6.0 0.04 -56.2 145.0 6.0 0.04 0.0 HOH
2.834
OD1
O
ASP F:75 F:126 6.0 0.04 -56.6 146.5 NA NA NA
ASP I:75 I:126 5.0 0.033 -57.9 142.4 NA NA NA
ASP L:75 L:126 6.0 0.04 -52.6 141.6 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 5.0 0.033 -55.7 141.0 5.0 0.033 0.0 HOH
2.589
OD2
O
ASP F:75 F:126 7.0 0.047 -51.3 142.1 NA NA NA
ASP I:75 I:126 6.0 0.04 -53.6 141.0 NA NA NA
ASP L:75 L:126 6.0 0.04 -55.2 140.5 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 5.0 0.033 -49.1 142.9 5.0 0.033 0.0 HOH
2.455
OD2
O
ASP F:75 F:126 8.0 0.053 -51.2 144.1 NA NA NA
ASP I:75 I:126 6.0 0.04 -51.9 137.8 NA NA NA
ASP L:75 L:126 7.0 0.047 -53.1 142.1 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 6.0 0.04 -55.6 146.4 6.0 0.04 0.0 HOH
2.683
OD1
O
ASP F:75 F:126 5.0 0.033 -52.5 143.5 NA NA NA
ASP I:75 I:126 5.0 0.033 -53.8 138.7 NA NA NA
ASP L:75 L:126 6.0 0.04 -51.1 141.8 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 6.0 0.04 -50.6 140.9 6.0 0.04 0.0 HOH
2.495
OD2
O
ASP F:75 F:126 5.0 0.033 -51.3 142.8 NA NA NA
ASP I:75 I:126 6.0 0.04 -55.4 140.7 NA NA NA
ASP L:75 L:126 9.0 0.06 -54.7 144.4 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASP C:75 C:126 7.0 0.047 -52.7 142.9 7.0 0.047 0.0 HOH
2.629
OD2
O
ASP F:75 F:126 8.0 0.053 -52.4 143.1 NA NA NA
ASP I:75 I:126 6.0 0.04 -55.7 139.2 NA NA NA
ASP L:75 L:126 6.0 0.04 -56.2 140.5 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 ASP C:75 C:126 6.0 0.04 -49.1 147.4 6.0 0.04 0.0 HOH
2.586
OD2
O
ASP F:75 F:126 7.0 0.047 -52.9 143.3 NA NA NA
ASP I:75 I:126 7.0 0.047 -53.6 141.0 NA NA NA
ASP L:75 L:126 7.0 0.047 -53.0 142.2 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 5.0 0.033 -53.1 144.1 5.0 0.033 0.0 HOH
2.638
OD1
O
ASP F:75 F:126 7.0 0.047 -50.9 140.0 NA NA NA
ASP I:75 I:126 6.0 0.04 -51.0 143.1 NA NA NA
ASP L:75 L:126 7.0 0.047 -54.1 142.3 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 5.0 0.033 -53.7 146.1 5.0 0.033 0.0 HOH
2.629
OD2
O
ASP F:75 F:126 7.0 0.047 -52.7 141.8 NA NA NA
ASP I:75 I:126 5.0 0.033 -53.6 141.4 NA NA NA
ASP L:75 L:126 7.0 0.047 -55.7 140.5 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 5.0 0.033 -53.4 145.9 5.0 0.033 0.0 HOH
2.625
OD2
O
ASP F:75 F:126 5.0 0.033 -52.5 142.0 NA NA NA
ASP I:75 I:126 6.0 0.04 -53.6 142.5 NA NA NA
ASP L:75 L:126 6.0 0.04 -54.8 143.1 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 5.0 0.033 -56.2 139.3 5.0 0.033 0.0 HOH
3.002
OD1
O
ASP F:75 F:126 7.0 0.047 -60.8 144.3 NA NA NA
ASP I:75 I:126 5.0 0.033 -61.6 130.3 NA NA NA
ASP L:75 L:126 5.0 0.033 -57.1 143.2 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 7.0 0.047 -51.7 146.5 7.0 0.047 0.0 HOH
2.538
OD2
O
ASP F:75 F:126 6.0 0.04 -58.9 152.1 NA NA NA
ASP I:75 I:126 6.0 0.04 -56.1 140.8 NA NA NA
ASP L:75 L:126 8.0 0.053 -53.4 145.6 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 6.0 0.04 -49.6 148.6 6.0 0.04 0.0 HOH
2.637
OD2
O
ASP F:75 F:126 7.0 0.047 -50.3 143.4 NA NA NA
ASP I:75 I:126 7.0 0.047 -54.2 143.0 NA NA NA
ASP L:75 L:126 7.0 0.047 -51.6 142.5 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 7.0 0.047 -51.9 143.6 7.0 0.047 0.0 HOH
2.662
OD1
O
ASP F:75 F:126 8.0 0.053 -46.6 141.2 NA NA NA
ASP I:75 I:126 7.0 0.047 -52.3 140.1 NA NA NA
ASP L:75 L:126 9.0 0.06 -51.2 140.9 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASP C:75 C:126 7.0 0.047 -54.0 145.3 7.0 0.047 0.0 HOH
2.661
OD1
O
ASP F:75 F:126 9.0 0.06 -48.3 143.8 NA NA NA
ASP I:75 I:126 7.0 0.047 -53.6 142.0 NA NA NA
ASP L:75 L:126 8.0 0.053 -52.9 143.2 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 ASP D:75 D:126 7.0 0.047 -57.3 132.6 7.0 0.047 0.0 HOH
2.922
OD1
O
ASP H:75 H:126 8.0 0.053 -57.7 132.0 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 ASP A:75 V:126 8.0 0.053 -55.6 141.9 8.0 0.053 0.0 HOH
2.710
OD1
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ASP C:75 C:126 5.0 0.033 -53.7 143.6 5.0 0.033 0.0 HOH
2.660
OD2
O
ASP F:75 F:126 7.0 0.047 -49.3 147.4 NA NA NA
ASP I:75 I:126 7.0 0.047 -52.9 141.1 NA NA NA
ASP L:75 L:126 7.0 0.047 -52.6 145.1 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ASP C:75 C:126 5.0 0.033 -54.8 147.6 5.0 0.033 0.0 HOH
2.544
OD1
O
ASP F:75 F:126 6.0 0.04 -49.1 142.4 NA NA NA
ASP I:75 I:126 6.0 0.04 -52.9 141.4 NA NA NA
ASP L:75 L:126 5.0 0.033 -55.0 143.6 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ASP C:75 C:126 6.0 0.04 -55.2 142.6 6.0 0.04 0.0 ACT
HOH
5.263
2.748
OD2
OD1
O
O
ASP F:75 F:126 7.0 0.047 -52.9 142.6 NA NA NA
ASP L:75 L:126 7.0 0.047 -54.6 143.2 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 ASP I:75 I:126 7.0 0.047 -54.0 142.6 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 ASP C:75 C:126 5.0 0.033 -48.4 143.6 5.0 0.033 0.0 HOH
3.377
OD1
O
ASP F:75 F:126 7.0 0.047 -46.8 142.4 NA NA NA
ASP I:75 I:126 6.0 0.04 -48.7 141.6 NA NA NA
ASP L:75 L:126 8.0 0.053 -48.2 141.7 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ASP C:75 C:126 7.0 0.047 -53.8 138.1 7.0 0.047 0.0 HOH
2.542
OD1
O
ASP F:75 F:126 7.0 0.047 -52.2 141.6 NA NA NA
ASP I:75 I:126 7.0 0.047 -52.9 138.3 NA NA NA
ASP L:75 L:126 5.0 0.033 -51.7 140.8 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ASP B:75 B:126 7.0 0.047 -64.8 135.0 7.0 0.047 0.0 EDO
HOH
3.636
2.657
OD2
OD1
O1
O
ASP F:75 F:126 7.0 0.047 -63.9 135.2 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ASP B:75 B:126 6.0 0.04 -60.8 137.0 6.0 0.04 0.0 EDO
EDO
HOH
4.944
7.358
2.639
OD2
N
OD2
O1
O1
O
ASP F:75 F:126 7.0 0.047 -61.7 136.7 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 ASP D:75 D:126 3.0 0.02 -72.6 143.8 3.0 0.02 0.0 HOH
6.457
OD2
O
ASP H:75 H:126 4.0 0.027 -72.7 144.0 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 ASP D:75 L:126 6.0 0.04 -47.6 139.8 6.0 0.04 0.0 NA
HOH
2.637
2.644
OD2
OD1
NA
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 ASP C:75 L:126 9.0 0.06 -54.0 131.5 9.0 0.06 0.0 HOH
2.340
OD1
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ASP C:76 C:126 5.0 0.033 -50.4 153.2 5.0 0.033 0.0
ASP F:76 F:126 5.0 0.033 -46.5 138.0 NA NA NA
ASP I:76 I:126 7.0 0.047 -50.8 132.7 NA NA NA
ASP L:76 L:126 9.0 0.06 -44.5 144.1 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ASP C:76 C:126 8.0 0.053 -58.0 144.1 8.0 0.053 0.0 HOH
5.297
OD2
O
ASP F:76 F:126 7.0 0.047 -52.1 146.3 NA NA NA
ASP I:76 I:126 9.0 0.06 -49.2 132.7 NA NA NA
ASP L:76 L:126 7.0 0.047 -43.7 128.9 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ASP C:76 C:126 7.0 0.047 -60.6 137.9 7.0 0.047 0.0 HOH
6.097
OD2
O
ASP F:76 F:126 8.0 0.053 -47.4 148.2 NA NA NA
ASP I:76 I:126 8.0 0.053 -51.0 143.2 NA NA NA
ASP L:76 L:126 6.0 0.04 -50.7 137.7 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ASP C:76 C:126 6.0 0.04 -51.8 137.8 6.0 0.04 0.0 HOH
2.634
OD1
O
ASP F:76 F:126 8.0 0.053 -52.2 147.5 NA NA NA
ASP I:76 I:126 8.0 0.053 -52.1 136.4 NA NA NA
ASP L:76 L:126 6.0 0.04 -48.2 138.8 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 ASP D:76 V:126 7.0 0.047 -53.1 143.4 7.0 0.047 0.0 GOL
HOH
5.122
2.631
OD2
OD2
O3
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 ASP C:76 C:126 4.0 0.027 -59.4 140.0 4.0 0.027 0.0 ACT
HOH
5.729
2.952
OD2
OD1
OXT
O
ASP F:76 F:126 6.0 0.04 -57.4 149.3 NA NA NA
ASP I:76 I:126 6.0 0.04 -60.3 137.9 NA NA NA
ASP L:76 L:126 6.0 0.04 -57.2 139.4 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 ASP D:76 V:126 5.0 0.033 -49.3 141.9 5.0 0.033 0.0 F4K
GOL
HOH
5.765
4.660
2.661
C
OD1
OD1
C05
O1
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 ASP C:73 V:126 8.0 0.053 -59.0 143.6 8.0 0.053 0.0 HOH
2.686
OD2
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 ASP C:73 C:126 9.0 0.06 -58.7 145.3 9.0 0.06 0.0 HOH
4.669
OD2
O
ASP F:73 F:126 11.0 0.073 -56.5 145.0 NA NA NA
ASP I:73 I:126 9.0 0.06 -55.9 143.2 NA NA NA
ASP L:73 L:126 9.0 0.06 -55.8 144.3 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 ASP B:73 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 ASP C:73 C:126 6.0 0.04 -53.3 141.8 6.0 0.04 0.0 HOH
2.641
OD2
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ASP D:73 V:126 7.0 0.047 -53.3 146.4 7.0 0.047 0.0 GOL
HOH
3.810
2.597
OD2
OD2
HO3
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ASP D:73 V:126 7.0 0.047 -53.6 142.5 7.0 0.047 0.0 FMT
HOH
5.249
2.623
OD2
OD2
O2
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 ASP I:73 V:126 1.0 0.007 -77.4 157.6 1.0 0.007 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 ASP C:88 C:126 8.0 0.053 -66.2 140.3 8.0 0.053 0.0 HOH
2.713
OD1
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 ASP A:76 A:126 6.0 0.04 -55.8 140.6 6.0 0.04 0.0
ASP E:76 E:126 8.0 0.053 -55.1 140.5 NA NA NA
ASP I:76 I:126 7.0 0.047 -56.5 141.0 NA NA NA
ASP M:76 M:126 7.0 0.047 -56.2 140.9 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 ASP A:68 AAA:126 6.0 0.04 -50.9 136.7 6.0 0.04 0.0 GOL
GOL
GOL
IOD
IOD
HOH
4.981
5.800
6.771
6.693
8.702
2.626
OD2
C
OD2
N
CB
OD2
O1
C3
O3
I
I
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 ASP A:68 AAA:126 7.0 0.047 -52.3 147.1 7.0 0.047 0.0 EDO
HOH
5.434
2.478
OD2
OD2
C1
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ASP C:75 C:126 5.0 0.033 -56.0 146.5 5.0 0.033 0.0 HOH
2.906
OD1
O
ASP F:75 F:126 8.0 0.053 -57.0 135.7 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ASP C:75 C:126 5.0 0.033 -56.9 139.3 5.0 0.033 0.0 HOH
2.842
OD1
O
ASP F:75 F:126 5.0 0.033 -56.9 143.4 NA NA NA
ASP I:75 I:126 7.0 0.047 -58.6 133.5 NA NA NA
ASP L:75 L:126 6.0 0.04 -55.3 137.1 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ASP C:75 C:126 6.0 0.04 -60.8 147.1 6.0 0.04 0.0 HOH
2.811
OD1
O
ASP F:75 F:126 5.0 0.033 -57.8 151.0 NA NA NA
ASP I:75 I:126 7.0 0.047 -60.3 133.5 NA NA NA
ASP L:75 L:126 5.0 0.033 -61.6 137.2 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 ASP B:66 B:126 7.0 0.047 -62.1 143.9 7.0 0.047 0.0 HOH
2.678
OD1
O
ASP F:66 F:126 5.0 0.033 -63.5 140.6 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 ASP L:67 V:126 8.0 0.053 -79.8 -172.4 8.0 0.053 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 ASP A:126 A:126 4.0 0.027 -54.0 135.2