Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188245 . G A CCDS2597.1:NM_000551.3:c.388Gtt>Att_NP_000542.1:p.130V>I Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 VAL A:150 A:130 1.0 0.006 E -128.6 116.8 1.0 0.006 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 VAL C:114 C:130 1.0 0.006 E -148.2 119.2 1.0 0.006 0.0 HOH
6.222
O
O
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 VAL C:88 C:130 1.0 0.006 E -135.1 116.6 1.0 0.006 0.0 HOH
2.677
O
O
VAL F:88 F:130 0.0 0.0 E -135.9 116.9 NA NA NA
VAL I:88 I:130 1.0 0.006 E -136.6 116.5 NA NA NA
VAL L:88 L:130 0.0 0.0 E -133.7 117.3 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 VAL C:79 C:130 0.0 0.0 E -131.7 123.1 0.0 0.0 0.0 HOH
3.520
C
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 VAL C:79 C:130 2.0 0.013 E -119.7 124.4 2.0 0.013 0.0
VAL F:79 F:130 1.0 0.006 E -149.4 117.9 NA NA NA
VAL I:79 I:130 3.0 0.019 E -129.7 118.6 NA NA NA
VAL L:79 L:130 2.0 0.013 E -123.4 120.7 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 VAL C:79 C:130 1.0 0.006 E -133.2 119.5 1.0 0.006 0.0 HOH
3.690
C
O
VAL F:79 F:130 0.0 0.0 E -132.0 120.1 NA NA NA
VAL I:79 I:130 1.0 0.006 E -133.6 120.0 NA NA NA
VAL L:79 L:130 0.0 0.0 E -132.7 119.2 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 VAL C:79 C:130 0.0 0.0 E -133.8 118.1 0.0 0.0 0.0 HOH
3.624
C
O
VAL F:79 F:130 0.0 0.0 E -135.0 116.3 NA NA NA
VAL I:79 I:130 1.0 0.006 E -126.7 116.9 NA NA NA
VAL L:79 L:130 1.0 0.006 E -133.9 116.9 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 VAL C:79 C:130 1.0 0.006 E -134.1 118.6 1.0 0.006 0.0 HOH
3.028
O
O
VAL F:79 F:130 1.0 0.006 E -133.2 117.0 NA NA NA
VAL I:79 I:130 1.0 0.006 E -132.1 117.3 NA NA NA
VAL L:79 L:130 0.0 0.0 E -133.3 115.9 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 1.0 0.006 E -136.4 129.0 1.0 0.006 0.0 HOH
2.768
O
O
VAL F:79 F:130 0.0 0.0 E -137.2 120.5 NA NA NA
VAL I:79 I:130 1.0 0.006 E -135.1 119.9 NA NA NA
VAL L:79 L:130 1.0 0.006 E -138.0 119.8 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 0.0 0.0 E -134.0 123.0 0.0 0.0 0.0 HOH
2.633
O
O
VAL F:79 F:130 0.0 0.0 E -133.9 122.6 NA NA NA
VAL I:79 I:130 0.0 0.0 E -134.5 120.7 NA NA NA
VAL L:79 L:130 1.0 0.006 E -136.0 123.2 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 1.0 0.006 E -133.7 125.0 1.0 0.006 0.0 HOH
2.978
O
O
VAL F:79 F:130 0.0 0.0 E -135.3 118.5 NA NA NA
VAL I:79 I:130 0.0 0.0 E -142.5 121.4 NA NA NA
VAL L:79 L:130 0.0 0.0 E -138.0 119.7 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 1.0 0.006 E -132.6 122.5 1.0 0.006 0.0 HOH
2.787
O
O
VAL F:79 F:130 0.0 0.0 E -133.8 122.4 NA NA NA
VAL I:79 I:130 0.0 0.0 E -129.5 126.9 NA NA NA
VAL L:79 L:130 1.0 0.006 E -131.7 124.7 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 0.0 0.0 E -133.2 117.8 0.0 0.0 0.0 HOH
2.866
O
O
VAL F:79 F:130 0.0 0.0 E -137.6 118.4 NA NA NA
VAL I:79 I:130 0.0 0.0 E -141.0 117.7 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.5 116.1 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 1.0 0.006 E -133.0 126.6 1.0 0.006 0.0 HOH
2.718
O
O
VAL F:79 F:130 1.0 0.006 E -132.3 121.5 NA NA NA
VAL I:79 I:130 1.0 0.006 E -128.9 122.0 NA NA NA
VAL L:79 L:130 1.0 0.006 E -131.3 121.9 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 0.0 0.0 E -130.4 125.4 0.0 0.0 0.0 HOH
2.888
O
O
VAL F:79 F:130 0.0 0.0 E -133.3 121.4 NA NA NA
VAL I:79 I:130 0.0 0.0 E -135.7 117.3 NA NA NA
VAL L:79 L:130 0.0 0.0 E -133.5 120.0 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 0.0 0.0 E -132.6 124.3 0.0 0.0 0.0 HOH
2.870
O
O
VAL F:79 F:130 1.0 0.006 E -132.7 120.5 NA NA NA
VAL I:79 I:130 0.0 0.0 E -133.9 119.5 NA NA NA
VAL L:79 L:130 0.0 0.0 E -133.3 124.7 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 1.0 0.006 E -124.0 123.3 1.0 0.006 0.0 HOH
2.812
O
O
VAL F:79 F:130 0.0 0.0 E -133.4 119.6 NA NA NA
VAL I:79 I:130 1.0 0.006 E -130.5 123.0 NA NA NA
VAL L:79 L:130 0.0 0.0 E -137.9 125.3 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 VAL C:79 C:130 1.0 0.006 E -129.7 123.6 1.0 0.006 0.0 HOH
2.956
O
O
VAL F:79 F:130 0.0 0.0 E -130.9 121.0 NA NA NA
VAL I:79 I:130 1.0 0.006 E -130.6 122.0 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.5 123.6 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 VAL C:79 C:130 1.0 0.006 E -137.5 125.4 1.0 0.006 0.0 HOH
2.911
O
O
VAL F:79 F:130 1.0 0.006 E -130.5 120.6 NA NA NA
VAL I:79 I:130 1.0 0.006 E -135.9 123.8 NA NA NA
VAL L:79 L:130 1.0 0.006 E -138.8 116.7 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -131.9 126.6 1.0 0.006 0.0 HOH
2.730
O
O
VAL F:79 F:130 1.0 0.006 E -132.7 120.5 NA NA NA
VAL I:79 I:130 1.0 0.006 E -132.8 124.2 NA NA NA
VAL L:79 L:130 1.0 0.006 E -131.0 124.4 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -130.6 129.1 1.0 0.006 0.0 HOH
2.815
O
O
VAL F:79 F:130 1.0 0.006 E -134.2 120.9 NA NA NA
VAL I:79 I:130 1.0 0.006 E -133.5 121.4 NA NA NA
VAL L:79 L:130 0.0 0.0 E -133.2 123.3 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -132.5 126.2 1.0 0.006 0.0 HOH
2.709
O
O
VAL F:79 F:130 1.0 0.006 E -132.0 119.9 NA NA NA
VAL I:79 I:130 1.0 0.006 E -130.8 122.9 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.4 125.7 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -133.9 118.0 1.0 0.006 0.0 HOH
2.978
O
O
VAL F:79 F:130 0.0 0.0 E -130.3 120.9 NA NA NA
VAL I:79 I:130 0.0 0.0 E -133.8 120.9 NA NA NA
VAL L:79 L:130 1.0 0.006 E -131.8 121.5 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -136.7 124.6 1.0 0.006 0.0 HOH
2.983
O
O
VAL F:79 F:130 1.0 0.006 E -127.9 125.4 NA NA NA
VAL I:79 I:130 1.0 0.006 E -136.2 123.1 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.4 125.2 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 2.0 0.013 E -134.5 122.2 2.0 0.013 0.0 HOH
2.681
O
O
VAL F:79 F:130 1.0 0.006 E -135.0 118.7 NA NA NA
VAL I:79 I:130 1.0 0.006 E -134.3 122.7 NA NA NA
VAL L:79 L:130 1.0 0.006 E -135.8 123.1 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -129.6 128.5 1.0 0.006 0.0 HOH
2.877
O
O
VAL F:79 F:130 1.0 0.006 E -131.9 121.0 NA NA NA
VAL I:79 I:130 1.0 0.006 E -130.4 122.6 NA NA NA
VAL L:79 L:130 1.0 0.006 E -131.4 124.1 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 VAL C:79 C:130 1.0 0.006 E -132.8 127.3 1.0 0.006 0.0 HOH
2.937
O
O
VAL F:79 F:130 1.0 0.006 E -132.9 123.9 NA NA NA
VAL I:79 I:130 1.0 0.006 E -130.9 122.8 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.1 122.2 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 VAL D:79 D:130 1.0 0.006 E -136.1 117.8 1.0 0.006 0.0 HOH
2.821
O
O
VAL H:79 H:130 1.0 0.006 E -136.3 117.2 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 VAL A:79 V:130 1.0 0.006 E -131.5 125.6 1.0 0.006 0.0 HOH
3.212
HA
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 VAL C:79 C:130 1.0 0.006 E -134.2 127.6 1.0 0.006 0.0 HOH
2.875
O
O
VAL F:79 F:130 1.0 0.006 E -130.8 125.1 NA NA NA
VAL I:79 I:130 1.0 0.006 E -134.3 118.5 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.4 125.7 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 VAL C:79 C:130 1.0 0.006 E -133.5 127.8 1.0 0.006 0.0 HOH
2.822
O
O
VAL F:79 F:130 1.0 0.006 E -136.8 121.3 NA NA NA
VAL I:79 I:130 1.0 0.006 E -136.1 121.7 NA NA NA
VAL L:79 L:130 1.0 0.006 E -132.1 123.3 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 VAL C:79 C:130 0.0 0.0 E -134.3 121.6 0.0 0.0 0.0 HOH
2.866
O
O
VAL F:79 F:130 1.0 0.006 E -133.7 118.2 NA NA NA
VAL L:79 L:130 1.0 0.006 E -133.7 121.1 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 VAL I:79 I:130 1.0 0.006 E -131.9 121.5 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 VAL C:79 C:130 2.0 0.013 E -138.6 116.9 2.0 0.013 0.0 HOH
6.885
O
O
VAL F:79 F:130 1.0 0.006 E -143.5 118.2 NA NA NA
VAL I:79 I:130 1.0 0.006 E -139.8 119.6 NA NA NA
VAL L:79 L:130 1.0 0.006 E -133.7 117.8 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 VAL C:79 C:130 1.0 0.006 E -135.3 120.8 1.0 0.006 0.0 HOH
3.577
C
O
VAL F:79 F:130 0.0 0.0 E -136.4 118.5 NA NA NA
VAL I:79 I:130 1.0 0.006 E -136.4 121.4 NA NA NA
VAL L:79 L:130 0.0 0.0 E -137.2 119.9 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 VAL B:79 B:130 1.0 0.006 E -142.3 114.1 1.0 0.006 0.0 HOH
2.731
O
O
VAL F:79 F:130 1.0 0.006 E -142.4 113.7 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 VAL B:79 B:130 1.0 0.006 E -132.7 112.2 1.0 0.006 0.0 HOH
3.032
O
O
VAL F:79 F:130 1.0 0.006 E -134.0 112.5 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 VAL D:79 D:130 1.0 0.006 E -135.7 105.3 1.0 0.006 0.0
VAL H:79 H:130 1.0 0.006 E -135.7 105.3 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 VAL D:79 L:130 0.0 0.0 E -135.8 122.7 0.0 0.0 0.0 HOH
2.904
O
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 VAL C:79 L:130 0.0 0.0 E -132.5 117.4 0.0 0.0 0.0 HOH
2.589
O
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 VAL C:80 C:130 3.0 0.019 E -134.2 124.8 3.0 0.019 0.0
VAL F:80 F:130 1.0 0.006 E -111.7 121.8 NA NA NA
VAL I:80 I:130 2.0 0.013 E -98.4 125.1 NA NA NA
VAL L:80 L:130 1.0 0.006 E -132.2 110.3 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 VAL C:80 C:130 3.0 0.019 E -124.8 135.3 3.0 0.019 0.0 HOH
6.483
C
O
VAL F:80 F:130 3.0 0.019 E -125.5 129.0 NA NA NA
VAL I:80 I:130 1.0 0.006 E -156.8 116.1 NA NA NA
VAL L:80 L:130 2.0 0.013 E -137.5 121.3 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 VAL C:80 C:130 1.0 0.006 E -120.5 126.4 1.0 0.006 0.0
VAL F:80 F:130 1.0 0.006 E -129.5 122.2 NA NA NA
VAL I:80 I:130 1.0 0.006 E -138.9 125.3 NA NA NA
VAL L:80 L:130 0.0 0.0 E -127.0 117.3 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 VAL C:80 C:130 2.0 0.013 E -135.3 120.7 2.0 0.013 0.0 HOH
4.399
CG1
O
VAL F:80 F:130 2.0 0.013 E -127.5 118.3 NA NA NA
VAL I:80 I:130 2.0 0.013 E -139.8 115.2 NA NA NA
VAL L:80 L:130 1.0 0.006 E -131.2 120.9 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 VAL D:80 V:130 1.0 0.006 E -135.1 124.1 1.0 0.006 0.0 HOH
2.960
O
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 VAL C:80 C:130 0.0 0.0 E -129.6 120.9 0.0 0.0 0.0 HOH
3.740
C
O
VAL F:80 F:130 0.0 0.0 E -132.4 114.0 NA NA NA
VAL I:80 I:130 0.0 0.0 E -133.8 119.3 NA NA NA
VAL L:80 L:130 0.0 0.0 E -129.0 119.5 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 VAL D:80 V:130 1.0 0.006 E -130.8 122.5 1.0 0.006 0.0 F4K
HOH
7.149
2.889
N
O
C10
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 VAL C:77 V:130 1.0 0.006 E -128.9 118.7 1.0 0.006 0.0 HOH
2.803
O
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 VAL C:77 C:130 2.0 0.013 E -134.2 114.8 2.0 0.013 0.0 HOH
4.177
CG1
O
VAL F:77 F:130 2.0 0.013 E -133.3 116.5 NA NA NA
VAL I:77 I:130 2.0 0.013 E -135.5 117.5 NA NA NA
VAL L:77 L:130 2.0 0.013 E -135.6 116.8 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 VAL B:77 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 VAL C:77 C:130 1.0 0.006 E -134.9 121.5 1.0 0.006 0.0 HOH
3.118
O
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 VAL D:77 V:130 1.0 0.006 E -133.3 124.7 1.0 0.006 0.0 HOH
2.759
O
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 VAL D:77 V:130 1.0 0.006 E -127.7 123.5 1.0 0.006 0.0 HOH
2.889
HG13
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 VAL I:77 V:130 1.0 0.006 E -122.2 117.2 1.0 0.006 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 VAL C:92 C:130 0.0 0.0 E -129.7 119.5 0.0 0.0 0.0 HOH
3.336
O
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 VAL A:80 A:130 1.0 0.006 E -129.2 125.2 1.0 0.006 0.0
VAL E:80 E:130 2.0 0.013 E -129.8 124.2 NA NA NA
VAL I:80 I:130 1.0 0.006 E -130.1 125.2 NA NA NA
VAL M:80 M:130 0.0 0.0 E -128.8 124.5 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 VAL A:72 AAA:130 1.0 0.006 E -134.4 119.5 1.0 0.006 0.0 GOL
GOL
GOL
HOH
4.721
7.955
8.463
2.743
O
N
N
O
O2
O1
C3
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 VAL A:72 AAA:130 1.0 0.006 E -132.6 118.9 1.0 0.006 0.0 EDO
HOH
7.916
2.866
N
O
C2
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 VAL C:79 C:130 1.0 0.006 E -137.5 117.4 1.0 0.006 0.0 HOH
9.581
O
O
VAL F:79 F:130 0.0 0.0 E -140.2 122.4 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 VAL C:79 C:130 1.0 0.006 E -130.8 123.3 1.0 0.006 0.0 HOH
2.977
O
O
VAL F:79 F:130 1.0 0.006 E -140.2 121.0 NA NA NA
VAL I:79 I:130 1.0 0.006 E -137.1 119.5 NA NA NA
VAL L:79 L:130 0.0 0.0 E -137.5 121.9 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 VAL C:79 C:130 1.0 0.006 E -136.4 119.2 1.0 0.006 0.0 HOH
3.554
C
O
VAL F:79 F:130 1.0 0.006 E -134.5 118.2 NA NA NA
VAL I:79 I:130 1.0 0.006 E -135.1 116.6 NA NA NA
VAL L:79 L:130 2.0 0.013 E -132.9 124.8 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 VAL B:70 B:130 1.0 0.006 E -136.7 116.8 1.0 0.006 0.0 HOH
2.881
HG13
O
VAL F:70 F:130 1.0 0.006 E -136.6 116.4 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 VAL L:71 V:130 4.0 0.026 B -76.7 125.2 4.0 0.026 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 VAL A:130 A:130 0.0 0.0 E -123.5 118.3