Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188249 . A C CCDS2597.1:NM_000551.3:c.392aAc>aCc_NP_000542.1:p.131N>T Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 ASN A:151 A:131 68.0 0.425 T 56.2 43.2 68.0 0.425 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 ASN C:115 C:131 64.0 0.4 T 47.8 44.6 64.0 0.4 0.0 HOH
6.973
O
O
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 ASN C:89 C:131 72.0 0.45 T 52.8 42.0 72.0 0.45 0.0 HOH
3.068
N
O
ASN F:89 F:131 73.0 0.456 T 52.0 43.8 NA NA NA
ASN I:89 I:131 67.0 0.419 T 53.5 42.8 NA NA NA
ASN L:89 L:131 73.0 0.456 T 51.4 42.9 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 ASN C:80 C:131 63.0 0.394 T 48.2 44.7 63.0 0.394 0.0 HOH
2.968
N
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 ASN C:80 C:131 67.0 0.419 T 44.0 40.1 67.0 0.419 0.0
ASN F:80 F:131 58.0 0.362 T 47.9 42.9 NA NA NA
ASN I:80 I:131 66.0 0.412 T 49.3 43.0 NA NA NA
ASN L:80 L:131 58.0 0.362 T 40.8 60.5 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 ASN C:80 C:131 74.0 0.463 T 48.2 46.4 74.0 0.463 0.0 HOH
3.174
N
O
ASN F:80 F:131 65.0 0.406 T 47.2 46.6 NA NA NA
ASN I:80 I:131 65.0 0.406 T 48.2 47.0 NA NA NA
ASN L:80 L:131 64.0 0.4 T 48.2 46.6 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ASN C:80 C:131 71.0 0.444 T 48.9 45.4 71.0 0.444 0.0 HOH
3.026
ND2
O
ASN F:80 F:131 68.0 0.425 T 50.6 45.8 NA NA NA
ASN I:80 I:131 56.0 0.35 T 53.0 41.2 NA NA NA
ASN L:80 L:131 65.0 0.406 T 50.6 45.1 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ASN C:80 C:131 70.0 0.438 T 51.0 42.0 70.0 0.438 0.0 HOH
2.918
ND2
O
ASN F:80 F:131 65.0 0.406 T 51.2 43.6 NA NA NA
ASN I:80 I:131 66.0 0.412 T 52.6 41.3 NA NA NA
ASN L:80 L:131 69.0 0.431 T 52.7 41.1 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 71.0 0.444 T 29.5 49.0 71.0 0.444 0.0 HOH
2.993
ND2
O
ASN F:80 F:131 67.0 0.419 T 43.3 47.0 NA NA NA
ASN I:80 I:131 65.0 0.406 T 45.3 45.9 NA NA NA
ASN L:80 L:131 63.0 0.394 T 43.9 44.4 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 63.0 0.394 T 42.0 42.7 63.0 0.394 0.0 HOH
3.201
N
O
ASN F:80 F:131 69.0 0.431 T 42.9 44.5 NA NA NA
ASN I:80 I:131 65.0 0.406 T 48.0 46.5 NA NA NA
ASN L:80 L:131 65.0 0.406 T 41.2 47.0 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 70.0 0.438 T 40.3 47.3 70.0 0.438 0.0 HOH
3.517
CB
O
ASN F:80 F:131 66.0 0.412 T 46.8 53.6 NA NA NA
ASN I:80 I:131 64.0 0.4 T 47.9 40.8 NA NA NA
ASN L:80 L:131 61.0 0.381 T 46.5 46.5 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 68.0 0.425 T 42.9 46.1 68.0 0.425 0.0 HOH
2.898
ND2
O
ASN F:80 F:131 70.0 0.438 T 42.2 51.0 NA NA NA
ASN I:80 I:131 67.0 0.419 T 43.2 46.0 NA NA NA
ASN L:80 L:131 66.0 0.412 T 42.2 49.4 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 68.0 0.425 T 45.9 50.6 68.0 0.425 0.0 HOH
2.920
N
O
ASN F:80 F:131 65.0 0.406 T 45.6 53.8 NA NA NA
ASN I:80 I:131 64.0 0.4 T 51.4 44.9 NA NA NA
ASN L:80 L:131 62.0 0.388 T 49.2 48.2 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 72.0 0.45 T 37.5 44.0 72.0 0.45 0.0 HOH
3.118
N
O
ASN F:80 F:131 68.0 0.425 T 40.4 49.9 NA NA NA
ASN I:80 I:131 63.0 0.394 T 45.9 44.8 NA NA NA
ASN L:80 L:131 62.0 0.388 T 41.3 49.9 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 69.0 0.431 T 38.9 48.2 69.0 0.431 0.0 HOH
3.200
N
O
ASN F:80 F:131 67.0 0.419 T 44.2 47.7 NA NA NA
ASN I:80 I:131 63.0 0.394 T 49.6 44.1 NA NA NA
ASN L:80 L:131 60.0 0.375 T 43.6 49.7 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 62.0 0.388 T 40.4 42.5 62.0 0.388 0.0 HOH
3.011
N
O
ASN F:80 F:131 64.0 0.4 T 42.2 51.4 NA NA NA
ASN I:80 I:131 65.0 0.406 T 48.6 44.3 NA NA NA
ASN L:80 L:131 64.0 0.4 T 39.7 46.3 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 57.0 0.356 T 42.9 43.7 57.0 0.356 0.0 HOH
3.050
N
O
ASN F:80 F:131 64.0 0.4 T 45.3 49.6 NA NA NA
ASN I:80 I:131 62.0 0.388 T 45.8 45.0 NA NA NA
ASN L:80 L:131 61.0 0.381 T 39.1 46.5 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ASN C:80 C:131 63.0 0.394 T 41.4 44.9 63.0 0.394 0.0 HOH
3.122
N
O
ASN F:80 F:131 62.0 0.388 T 43.9 47.9 NA NA NA
ASN I:80 I:131 62.0 0.388 T 46.2 44.1 NA NA NA
ASN L:80 L:131 62.0 0.388 T 39.2 47.6 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 ASN C:80 C:131 72.0 0.45 T 38.1 46.8 72.0 0.45 0.0 HOH
2.985
N
O
ASN F:80 F:131 71.0 0.444 T 46.2 47.5 NA NA NA
ASN I:80 I:131 66.0 0.412 T 41.4 45.9 NA NA NA
ASN L:80 L:131 65.0 0.406 T 49.0 41.5 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 69.0 0.431 T 40.3 47.0 69.0 0.431 0.0 HOH
3.015
ND2
O
ASN F:80 F:131 70.0 0.438 T 45.3 47.8 NA NA NA
ASN I:80 I:131 63.0 0.394 T 41.6 48.7 NA NA NA
ASN L:80 L:131 63.0 0.394 T 41.6 47.8 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 72.0 0.45 T 37.1 47.3 72.0 0.45 0.0 HOH
3.049
ND2
O
ASN F:80 F:131 69.0 0.431 T 42.7 51.6 NA NA NA
ASN I:80 I:131 63.0 0.394 T 43.2 47.5 NA NA NA
ASN L:80 L:131 62.0 0.388 T 41.4 45.9 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 72.0 0.45 T 38.8 46.5 72.0 0.45 0.0 HOH
3.140
N
O
ASN F:80 F:131 66.0 0.412 T 45.2 50.9 NA NA NA
ASN I:80 I:131 64.0 0.4 T 43.4 46.1 NA NA NA
ASN L:80 L:131 63.0 0.394 T 39.2 47.5 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 63.0 0.394 T 48.4 51.0 63.0 0.394 0.0 HOH
2.758
ND2
O
ASN F:80 F:131 69.0 0.431 T 42.3 60.5 NA NA NA
ASN I:80 I:131 64.0 0.4 T 49.5 48.8 NA NA NA
ASN L:80 L:131 67.0 0.419 T 45.5 47.4 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 65.0 0.406 T 38.2 49.9 65.0 0.406 0.0 HOH
3.060
ND2
O
ASN F:80 F:131 61.0 0.381 T 45.2 51.1 NA NA NA
ASN I:80 I:131 62.0 0.388 T 48.4 45.4 NA NA NA
ASN L:80 L:131 62.0 0.388 T 39.1 50.2 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 71.0 0.444 T 41.3 46.5 71.0 0.444 0.0 HOH
2.961
ND2
O
ASN F:80 F:131 70.0 0.438 T 46.9 49.3 NA NA NA
ASN I:80 I:131 65.0 0.406 T 42.8 47.0 NA NA NA
ASN L:80 L:131 66.0 0.412 T 44.4 43.2 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 67.0 0.419 T 37.4 46.9 67.0 0.419 0.0 HOH
2.858
ND2
O
ASN F:80 F:131 69.0 0.431 T 45.7 47.5 NA NA NA
ASN I:80 I:131 67.0 0.419 T 45.0 45.9 NA NA NA
ASN L:80 L:131 65.0 0.406 T 43.1 46.4 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ASN C:80 C:131 72.0 0.45 T 39.0 48.4 72.0 0.45 0.0 HOH
3.055
ND2
O
ASN F:80 F:131 71.0 0.444 T 42.6 47.2 NA NA NA
ASN I:80 I:131 66.0 0.412 T 45.0 44.8 NA NA NA
ASN L:80 L:131 63.0 0.394 T 42.7 47.6 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 ASN D:80 D:131 76.0 0.475 T 48.7 50.8 76.0 0.475 0.0 HOH
3.054
N
O
ASN H:80 H:131 75.0 0.469 T 48.6 51.5 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 ASN A:80 V:131 70.0 0.438 T 40.7 45.0 70.0 0.438 0.0 HOH
3.103
H
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ASN C:80 C:131 71.0 0.444 T 34.2 54.6 71.0 0.444 0.0 HOH
3.207
N
O
ASN F:80 F:131 69.0 0.431 T 41.2 52.4 NA NA NA
ASN I:80 I:131 68.0 0.425 T 51.6 43.9 NA NA NA
ASN L:80 L:131 65.0 0.406 T 36.6 50.5 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ASN C:80 C:131 70.0 0.438 T 35.9 47.8 70.0 0.438 0.0 HOH
3.197
ND2
O
ASN F:80 F:131 69.0 0.431 T 41.4 47.8 NA NA NA
ASN I:80 I:131 64.0 0.4 T 44.0 47.2 NA NA NA
ASN L:80 L:131 64.0 0.4 T 44.4 44.5 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ASN C:80 C:131 61.0 0.381 T 47.5 43.5 61.0 0.381 0.0 HOH
3.130
N
O
ASN F:80 F:131 59.0 0.369 T 47.7 42.9 NA NA NA
ASN L:80 L:131 67.0 0.419 T 48.2 41.6 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 ASN I:80 I:131 57.0 0.356 T 48.2 39.8 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 ASN C:80 C:131 67.0 0.419 T 44.5 51.3 67.0 0.419 0.0 HOH
7.799
O
O
ASN F:80 F:131 69.0 0.431 T 45.7 52.7 NA NA NA
ASN I:80 I:131 65.0 0.406 T 41.9 48.9 NA NA NA
ASN L:80 L:131 63.0 0.394 T 44.0 49.3 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ASN C:80 C:131 60.0 0.375 S 42.4 41.0 60.0 0.375 0.0 HOH
3.152
N
O
ASN F:80 F:131 70.0 0.438 T 43.4 46.6 NA NA NA
ASN I:80 I:131 60.0 0.375 T 45.2 47.0 NA NA NA
ASN L:80 L:131 66.0 0.412 T 44.8 46.3 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ASN B:80 B:131 72.0 0.45 T 55.4 37.3 72.0 0.45 0.0 HOH
3.470
ND2
O
ASN F:80 F:131 74.0 0.463 T 55.6 37.7 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ASN B:80 B:131 73.0 0.456 T 55.9 39.5 73.0 0.456 0.0 HOH
2.874
ND2
O
ASN F:80 F:131 72.0 0.45 T 55.3 40.4 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 ASN D:80 D:131 70.0 0.438 S 65.0 48.5 70.0 0.438 0.0
ASN H:80 H:131 69.0 0.431 S 64.8 48.5 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 ASN D:80 L:131 65.0 0.406 T 46.8 43.7 65.0 0.406 0.0 HOH
3.054
N
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 ASN C:80 L:131 65.0 0.406 T 51.1 46.8 65.0 0.406 0.0 HOH
2.570
ND2
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ASN C:81 C:131 70.0 0.438 T 40.7 46.5 70.0 0.438 0.0
ASN F:81 F:131 75.0 0.469 T 61.5 34.5 NA NA NA
ASN I:81 I:131 67.0 0.419 T 48.2 49.8 NA NA NA
ASN L:81 L:131 72.0 0.45 T 61.3 47.5 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ASN C:81 C:131 73.0 0.456 T 32.9 47.8 73.0 0.456 0.0 HOH
3.180
CB
O
ASN F:81 F:131 61.0 0.381 T 31.0 59.0 NA NA NA
ASN I:81 I:131 68.0 0.425 T 43.4 45.5 NA NA NA
ASN L:81 L:131 61.0 0.381 T 45.4 40.0 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ASN C:81 C:131 64.0 0.4 T 41.4 49.1 64.0 0.4 0.0
ASN F:81 F:131 53.0 0.331 T 39.1 55.9 NA NA NA
ASN I:81 I:131 70.0 0.438 T 45.6 44.0 NA NA NA
ASN L:81 L:131 54.0 0.338 T 46.5 58.9 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ASN C:81 C:131 66.0 0.412 T 49.8 42.5 66.0 0.412 0.0 HOH
4.514
ND2
O
ASN F:81 F:131 60.0 0.375 T 43.4 48.2 NA NA NA
ASN I:81 I:131 60.0 0.375 T 44.1 45.1 NA NA NA
ASN L:81 L:131 61.0 0.381 T 43.2 55.6 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 ASN D:81 V:131 71.0 0.444 T 42.9 45.0 71.0 0.444 0.0 HOH
3.091
N
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 ASN C:81 C:131 72.0 0.45 T 52.3 43.9 72.0 0.45 0.0 HOH
3.146
N
O
ASN F:81 F:131 67.0 0.419 T 51.7 54.1 NA NA NA
ASN I:81 I:131 65.0 0.406 T 51.9 45.6 NA NA NA
ASN L:81 L:131 66.0 0.412 T 52.3 45.6 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 ASN D:81 V:131 71.0 0.444 T 44.2 48.5 71.0 0.444 0.0 HOH
3.193
N
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 ASN C:78 V:131 68.0 0.425 T 56.2 42.6 68.0 0.425 0.0 HOH
2.949
N
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 ASN C:78 C:131 66.0 0.412 T 52.6 43.9 66.0 0.412 0.0 HOH
3.106
ND2
O
ASN F:78 F:131 67.0 0.419 T 50.5 45.2 NA NA NA
ASN I:78 I:131 68.0 0.425 T 49.8 44.3 NA NA NA
ASN L:78 L:131 69.0 0.431 T 49.7 44.5 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 ASN B:78 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 ASN C:78 C:131 69.0 0.431 T 45.9 44.3 69.0 0.431 0.0 HOH
3.123
N
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ASN D:78 V:131 71.0 0.444 T 40.2 45.4 71.0 0.444 0.0 HOH
2.139
HD22
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ASN D:78 V:131 68.0 0.425 T 46.9 45.0 68.0 0.425 0.0 HOH
2.776
HB2
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 ASN I:78 V:131 68.0 0.425 T 56.4 42.0 68.0 0.425 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 ASN C:93 C:131 70.0 0.438 T 53.5 43.0 70.0 0.438 0.0 HOH
3.223
N
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 ASN A:81 A:131 61.0 0.381 T 42.1 45.4 61.0 0.381 0.0
ASN E:81 E:131 61.0 0.381 T 42.7 44.1 NA NA NA
ASN I:81 I:131 63.0 0.394 T 41.6 45.1 NA NA NA
ASN M:81 M:131 66.0 0.412 T 41.8 44.7 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 ASN A:73 AAA:131 67.0 0.419 T 48.3 44.9 67.0 0.419 0.0 GOL
GOL
HOH
3.216
7.256
3.177
ND2
C
N
O2
C3
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 ASN A:73 AAA:131 59.0 0.369 T 47.7 47.1 59.0 0.369 0.0 EDO
HOH
6.477
3.261
C
N
O2
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ASN C:80 C:131 58.0 0.362 T 46.9 52.3 58.0 0.362 0.0 HOH
6.811
ND2
O
ASN F:80 F:131 61.0 0.381 T 44.0 51.5 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ASN C:80 C:131 69.0 0.431 T 42.1 52.5 69.0 0.431 0.0 HOH
3.007
ND2
O
ASN F:80 F:131 68.0 0.425 T 41.8 55.6 NA NA NA
ASN I:80 I:131 61.0 0.381 T 47.9 48.4 NA NA NA
ASN L:80 L:131 62.0 0.388 T 41.8 47.8 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ASN C:80 C:131 65.0 0.406 T 44.4 50.1 65.0 0.406 0.0 HOH
2.923
ND2
O
ASN F:80 F:131 65.0 0.406 T 47.7 54.1 NA NA NA
ASN I:80 I:131 65.0 0.406 T 50.2 50.8 NA NA NA
ASN L:80 L:131 67.0 0.419 T 37.7 49.9 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 ASN B:71 B:131 71.0 0.444 T 53.8 42.0 71.0 0.444 0.0 HOH
2.637
HB2
O
ASN F:71 F:131 71.0 0.444 T 53.8 41.9 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 ASN L:72 V:131 50.0 0.312 T 62.8 41.1 50.0 0.312 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 ASN A:131 A:131 66.0 0.412 T 51.0 39.8