Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188254 . A C CCDS2597.1:NM_000551.3:c.397Act>Cct_NP_000542.1:p.133T>P Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 THR A:153 A:133 80.0 0.571 B -132.2 -177.9 80.0 0.571 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 THR C:117 C:133 80.0 0.571 B -114.8 -179.8 80.0 0.571 0.0 HOH
2.995
OG1
O
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 THR C:91 C:133 80.0 0.571 B -135.9 178.2 80.0 0.571 0.0 HOH
2.859
OG1
O
THR F:91 F:133 80.0 0.571 B -135.6 177.8 NA NA NA
THR I:91 I:133 82.0 0.586 B -135.4 179.0 NA NA NA
THR L:91 L:133 78.0 0.557 B -137.2 178.6 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 THR C:82 C:133 73.0 0.521 B -124.1 179.1 73.0 0.521 0.0 HOH
4.357
O
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 THR C:82 C:133 59.0 NA B -96.0 -169.1 59.0 NA NA
THR F:82 F:133 55.0 NA B -102.2 -160.7 NA NA NA
THR I:82 I:133 58.0 NA B -89.8 -170.6 NA NA NA
THR L:82 L:133 53.0 NA B -103.8 -175.2 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 THR C:82 C:133 83.0 0.593 B -127.0 178.4 83.0 0.593 0.0 HOH
4.919
O
O
THR F:82 F:133 83.0 0.593 B -128.1 178.5 NA NA NA
THR I:82 I:133 83.0 0.593 B -128.5 -179.4 NA NA NA
THR L:82 L:133 77.0 0.55 B -129.5 166.8 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 THR C:82 C:133 81.0 0.579 B -132.3 176.0 81.0 0.579 0.0 HOH
3.639
CB
O
THR F:82 F:133 82.0 0.586 B -131.7 174.9 NA NA NA
THR I:82 I:133 83.0 0.593 B -131.9 176.3 NA NA NA
THR L:82 L:133 79.0 0.564 B -132.9 177.0 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 THR C:82 C:133 78.0 0.557 B -129.6 178.4 78.0 0.557 0.0 HOH
2.857
OG1
O
THR F:82 F:133 80.0 0.571 B -130.0 177.9 NA NA NA
THR I:82 I:133 81.0 0.579 B -129.3 177.9 NA NA NA
THR L:82 L:133 80.0 0.571 B -128.8 179.4 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 74.0 0.529 B -139.0 177.0 74.0 0.529 0.0 HOH
3.115
OG1
O
THR F:82 F:133 74.0 0.529 B -138.3 175.3 NA NA NA
THR I:82 I:133 85.0 0.607 B -126.0 -175.3 NA NA NA
THR L:82 L:133 76.0 0.543 B -134.4 -178.0 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 79.0 0.564 B -135.4 -178.8 79.0 0.564 0.0 HOH
2.902
OG1
O
THR F:82 F:133 74.0 0.529 B -136.4 178.1 NA NA NA
THR I:82 I:133 77.0 0.55 B -138.3 179.9 NA NA NA
THR L:82 L:133 75.0 0.536 B -145.6 -179.3 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 77.0 0.55 B -141.6 175.2 77.0 0.55 0.0 HOH
3.178
OG1
O
THR F:82 F:133 78.0 0.557 B -139.5 -179.9 NA NA NA
THR I:82 I:133 82.0 0.586 B -134.7 179.9 NA NA NA
THR L:82 L:133 75.0 0.536 B -151.9 -178.4 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 78.0 0.557 B -134.9 179.3 78.0 0.557 0.0 HOH
3.302
OG1
O
THR F:82 F:133 82.0 0.586 B -136.5 -179.1 NA NA NA
THR I:82 I:133 78.0 0.557 B -140.8 -175.1 NA NA NA
THR L:82 L:133 77.0 0.55 B -138.5 -179.2 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 73.0 0.521 B -140.0 175.6 73.0 0.521 0.0 HOH
3.011
OG1
O
THR F:82 F:133 76.0 0.543 B -135.0 178.1 NA NA NA
THR I:82 I:133 80.0 0.571 B -128.3 179.9 NA NA NA
THR L:82 L:133 74.0 0.529 B -148.4 178.5 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 77.0 0.55 B -139.2 177.6 77.0 0.55 0.0 HOH
3.257
OG1
O
THR F:82 F:133 79.0 0.564 B -140.6 -178.3 NA NA NA
THR I:82 I:133 74.0 0.529 B -139.1 -177.6 NA NA NA
THR L:82 L:133 77.0 0.55 B -135.1 -176.1 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 78.0 0.557 B -139.2 -177.1 78.0 0.557 0.0 HOH
3.427
OG1
O
THR F:82 F:133 77.0 0.55 B -127.6 -179.4 NA NA NA
THR I:82 I:133 78.0 0.557 B -137.2 -177.1 NA NA NA
THR L:82 L:133 76.0 0.543 B -144.6 -172.2 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 83.0 0.593 B -126.7 176.0 83.0 0.593 0.0 HOH
3.164
OG1
O
THR F:82 F:133 76.0 0.543 B -137.2 176.1 NA NA NA
THR I:82 I:133 78.0 0.557 B -143.0 -178.2 NA NA NA
THR L:82 L:133 79.0 0.564 B -138.0 -178.6 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 79.0 0.564 B -127.2 -176.3 79.0 0.564 0.0 HOH
3.236
OG1
O
THR F:82 F:133 75.0 0.536 B -139.5 179.3 NA NA NA
THR I:82 I:133 77.0 0.55 B -131.9 -176.8 NA NA NA
THR L:82 L:133 76.0 0.543 B -138.0 -176.5 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 THR C:82 C:133 79.0 0.564 B -131.5 179.7 79.0 0.564 0.0 HOH
3.158
OG1
O
THR F:82 F:133 76.0 0.543 B -138.8 -179.7 NA NA NA
THR I:82 I:133 78.0 0.557 B -135.0 -179.1 NA NA NA
THR L:82 L:133 73.0 0.521 B -143.9 -173.7 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 THR C:82 C:133 75.0 0.536 B -146.2 178.9 75.0 0.536 0.0 HOH
2.745
OG1
O
THR F:82 F:133 76.0 0.543 B -136.5 -176.0 NA NA NA
THR I:82 I:133 77.0 0.55 B -141.0 -172.1 NA NA NA
THR L:82 L:133 76.0 0.543 B -140.2 -170.9 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 75.0 0.536 B -144.3 -179.7 75.0 0.536 0.0 HOH
2.812
OG1
O
THR F:82 F:133 77.0 0.55 B -143.3 -177.1 NA NA NA
THR I:82 I:133 76.0 0.543 B -143.0 -175.6 NA NA NA
THR L:82 L:133 76.0 0.543 B -137.6 -173.1 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 78.0 0.557 B -143.7 178.7 78.0 0.557 0.0 HOH
2.831
OG1
O
THR F:82 F:133 75.0 0.536 B -143.5 -179.4 NA NA NA
THR I:82 I:133 75.0 0.536 B -144.1 -178.7 NA NA NA
THR L:82 L:133 74.0 0.529 B -139.8 -173.3 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 76.0 0.543 B -147.3 -177.6 76.0 0.543 0.0 HOH
2.702
OG1
O
THR F:82 F:133 78.0 0.557 B -140.9 -178.2 NA NA NA
THR I:82 I:133 76.0 0.543 B -142.6 -178.0 NA NA NA
THR L:82 L:133 76.0 0.543 B -140.0 -174.3 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 73.0 0.521 B -152.0 170.4 73.0 0.521 0.0 HOH
3.243
CG2
O
THR F:82 F:133 75.0 0.536 B -161.5 172.2 NA NA NA
THR I:82 I:133 73.0 0.521 B -156.4 175.2 NA NA NA
THR L:82 L:133 70.0 0.5 B -152.0 178.7 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 73.0 0.521 B -152.5 -178.6 73.0 0.521 0.0 HOH
3.235
CG2
O
THR F:82 F:133 79.0 0.564 B -132.8 -173.5 NA NA NA
THR I:82 I:133 77.0 0.55 B -143.0 -179.5 NA NA NA
THR L:82 L:133 75.0 0.536 B -141.9 -175.1 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 77.0 0.55 B -145.2 -175.5 77.0 0.55 0.0 HOH
2.838
OG1
O
THR F:82 F:133 77.0 0.55 B -144.4 -174.0 NA NA NA
THR I:82 I:133 77.0 0.55 B -148.0 -175.3 NA NA NA
THR L:82 L:133 76.0 0.543 B -138.4 -172.0 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 76.0 0.543 B -144.6 -178.3 76.0 0.543 0.0 HOH
2.733
OG1
O
THR F:82 F:133 79.0 0.564 B -140.4 -175.9 NA NA NA
THR I:82 I:133 75.0 0.536 B -146.9 -175.6 NA NA NA
THR L:82 L:133 74.0 0.529 B -139.1 -174.1 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 THR C:82 C:133 77.0 0.55 B -145.0 -177.2 77.0 0.55 0.0 HOH
2.875
OG1
O
THR F:82 F:133 77.0 0.55 B -141.0 -176.4 NA NA NA
THR I:82 I:133 78.0 0.557 B -143.0 -174.3 NA NA NA
THR L:82 L:133 76.0 0.543 B -141.1 -173.5 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 THR D:82 D:133 81.0 0.579 B -139.6 -178.9 81.0 0.579 0.0 HOH
3.438
CG2
O
THR H:82 H:133 81.0 0.579 B -139.6 -179.8 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 THR A:82 V:133 75.0 0.536 B -132.9 -174.6 75.0 0.536 0.0 HOH
2.727
OG1
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 THR C:82 C:133 76.0 0.543 B -147.1 179.4 76.0 0.543 0.0 HOH
3.216
CG2
O
THR F:82 F:133 77.0 0.55 B -141.2 -174.9 NA NA NA
THR I:82 I:133 76.0 0.543 B -142.2 -177.9 NA NA NA
THR L:82 L:133 75.0 0.536 B -136.4 -170.6 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 THR C:82 C:133 79.0 0.564 B -146.5 -175.9 79.0 0.564 0.0 HOH
2.763
OG1
O
THR F:82 F:133 80.0 0.571 B -147.2 -176.5 NA NA NA
THR I:82 I:133 77.0 0.55 B -138.0 -170.8 NA NA NA
THR L:82 L:133 79.0 0.564 B -139.2 -177.7 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 THR C:82 C:133 79.0 0.564 B -135.7 -174.1 79.0 0.564 0.0 HOH
3.238
OG1
O
THR F:82 F:133 77.0 0.55 B -137.2 -173.2 NA NA NA
THR L:82 L:133 79.0 0.564 B -137.0 -171.5 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 THR I:82 I:133 80.0 0.571 B -134.9 -172.1 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 THR C:82 C:133 71.0 0.507 B -138.1 -178.4 71.0 0.507 0.0 HOH
2.646
CG2
O
THR F:82 F:133 80.0 0.571 B -138.8 -177.5 NA NA NA
THR I:82 I:133 75.0 0.536 B -136.9 -180.0 NA NA NA
THR L:82 L:133 68.0 0.486 B -138.0 -177.2 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 THR C:82 C:133 92.0 0.657 S 65.3 163.7 92.0 0.657 0.0 HOH
5.051
O
O
THR F:82 F:133 83.0 0.593 B -134.1 -179.7 NA NA NA
THR I:82 I:133 79.0 0.564 B -134.0 -175.1 NA NA NA
THR L:82 L:133 79.0 0.564 B -128.6 -178.2 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 THR B:82 B:133 69.0 0.493 B -129.2 179.3 69.0 0.493 0.0 HOH
3.134
OG1
O
THR F:82 F:133 77.0 0.55 B -129.2 177.9 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 THR B:82 B:133 76.0 0.543 B -137.3 177.5 76.0 0.543 0.0 HOH
2.800
OG1
O
THR F:82 F:133 80.0 0.571 B -136.1 176.8 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 THR D:82 D:133 69.0 0.493 S -160.6 165.3 69.0 0.493 0.0
THR H:82 H:133 69.0 0.493 S -160.7 165.4 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 THR D:82 L:133 61.0 0.436 B -146.2 179.7 61.0 0.436 0.0 HOH
2.806
OG1
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 THR C:82 L:133 71.0 0.507 B -142.0 -177.4 71.0 0.507 0.0 HOH
2.614
OG1
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 THR C:83 C:133 51.0 NA B -100.7 176.9 51.0 NA NA
THR F:83 F:133 56.0 NA B -101.0 179.1 NA NA NA
THR I:83 I:133 58.0 NA B -106.1 -175.3 NA NA NA
THR L:83 L:133 46.0 NA B -100.4 165.0 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 THR C:83 C:133 53.0 NA B -112.2 -170.7 53.0 NA NA HOH
7.485
N
O
THR F:83 F:133 53.0 NA B -97.9 -170.6 NA NA NA
THR I:83 I:133 60.0 NA B -97.9 -161.8 NA NA NA
THR L:83 L:133 51.0 NA B -123.0 -178.1 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 THR C:83 C:133 55.0 NA B -116.7 -176.2 55.0 NA NA
THR F:83 F:133 54.0 NA B -109.3 -167.1 NA NA NA
THR I:83 I:133 81.0 0.579 B -122.8 -162.8 NA NA NA
THR L:83 L:133 77.0 0.55 B -123.5 -167.1 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 THR C:83 C:133 51.0 NA B -117.6 -178.0 51.0 NA NA HOH
4.858
O
O
THR F:83 F:133 84.0 0.6 B -142.9 178.1 NA NA NA
THR I:83 I:133 87.0 0.621 B -141.0 -176.5 NA NA NA
THR L:83 L:133 76.0 0.543 B -117.6 -170.1 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 THR D:83 V:133 75.0 0.536 B -130.1 -176.6 75.0 0.536 0.0 HOH
2.773
OG1
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 THR C:83 C:133 78.0 0.557 B -137.2 -175.8 78.0 0.557 0.0 HOH
5.124
N
O
THR F:83 F:133 77.0 0.55 B -125.9 -173.1 NA NA NA
THR I:83 I:133 87.0 0.621 B -118.6 -175.9 NA NA NA
THR L:83 L:133 77.0 0.55 B -139.8 -174.8 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 THR D:83 V:133 68.0 0.486 B -138.1 175.3 68.0 0.486 0.0 F4K
HOH
6.177
2.704
O
OG1
C10
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 THR C:80 V:133 77.0 0.55 B -132.9 -176.8 77.0 0.55 0.0 HOH
2.779
OG1
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 THR C:80 C:133 52.0 NA B -91.0 -172.6 52.0 NA NA HOH
4.306
CB
O
THR F:80 F:133 53.0 NA B -93.8 -173.1 NA NA NA
THR I:80 I:133 53.0 NA B -91.5 -172.2 NA NA NA
THR L:80 L:133 53.0 NA B -92.5 -173.6 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 THR B:80 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 THR C:80 C:133 77.0 0.55 B -135.3 -179.1 77.0 0.55 0.0 HOH
2.574
OG1
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 THR D:80 V:133 81.0 0.579 B -134.3 -176.8 81.0 0.579 0.0 HOH
2.556
HG22
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 THR D:80 V:133 77.0 0.55 B -140.5 -171.9 77.0 0.55 0.0 HOH
2.246
HG1
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 THR I:80 V:133 65.0 0.464 B -143.9 168.9 65.0 0.464 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 THR C:95 C:133 78.0 0.557 B -139.2 -177.9 78.0 0.557 0.0 HOH
3.219
OG1
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 THR A:83 A:133 75.0 0.536 B -136.7 -178.7 75.0 0.536 0.0
THR E:83 E:133 80.0 0.571 B -134.5 176.2 NA NA NA
THR I:83 I:133 73.0 0.521 B -137.4 -177.1 NA NA NA
THR M:83 M:133 75.0 0.536 B -136.5 179.6 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 THR A:75 AAA:133 79.0 0.564 B -134.6 178.6 79.0 0.564 0.0 GOL
GOL
GOL
HOH
4.936
6.719
6.723
2.946
CG2
C
N
OG1
O2
O1
C3
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 THR A:75 AAA:133 76.0 0.543 B -137.1 -178.3 76.0 0.543 0.0 EDO
HOH
6.161
3.236
N
CG2
C2
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 THR C:82 C:133 77.0 0.55 B -139.8 174.7 77.0 0.55 0.0 HOH
7.713
N
O
THR F:82 F:133 78.0 0.557 B -142.2 174.8 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 THR C:82 C:133 74.0 0.529 B -151.7 176.6 74.0 0.529 0.0 HOH
2.894
OG1
O
THR F:82 F:133 76.0 0.543 B -145.8 177.4 NA NA NA
THR I:82 I:133 77.0 0.55 B -146.7 177.9 NA NA NA
THR L:82 L:133 75.0 0.536 B -147.4 -176.3 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 THR C:82 C:133 77.0 0.55 B -144.5 175.8 77.0 0.55 0.0 HOH
2.905
OG1
O
THR F:82 F:133 75.0 0.536 B -153.5 175.1 NA NA NA
THR I:82 I:133 76.0 0.543 B -154.1 176.9 NA NA NA
THR L:82 L:133 74.0 0.529 B -149.0 -176.9 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 THR B:73 B:133 67.0 0.479 B -140.7 173.4 67.0 0.479 0.0 HOH
2.175
HG1
O
THR F:73 F:133 64.0 0.457 B -140.4 174.4 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 THR L:74 V:133 66.0 0.471 B -154.8 148.2 66.0 0.471 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 THR A:133 A:133 80.0 0.571 B -77.8 154.0