Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188287 . G A CCDS2597.1:NM_000551.3:c.430Gga>Aga_NP_000542.1:p.144G>R Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 GLY A:164 A:144 72.0 0.96 T 65.1 20.2 72.0 0.96 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 GLY C:128 C:144 72.0 0.96 T 55.9 25.9 72.0 0.96 0.0
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 GLY C:102 NA:NA DO NA DO DO DO NA NA NA
GLY F:102 F:144 52.0 0.693 G 68.2 9.5 NA NA NA
GLY I:102 I:144 73.0 0.973 T 64.9 19.9 NA NA NA
GLY L:102 L:144 66.0 0.88 S 162.2 17.2 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 GLY C:93 C:144 64.0 0.853 S 57.0 8.8 64.0 0.853 0.0 HOH
7.479
N
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 GLY C:93 C:144 68.0 0.907 162.1 84.7 68.0 0.907 0.0
GLY F:93 F:144 66.0 0.88 S 128.7 4.7 NA NA NA
GLY I:93 I:144 68.0 0.907 G 47.0 44.4 NA NA NA
GLY L:93 L:144 87.0 1.0 S 48.8 6.3 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 GLY C:93 NA:NA DO NA DO DO DO NA NA NA
GLY F:93 F:144 73.0 0.973 T 100.5 -49.9 NA NA NA
GLY I:93 I:144 76.0 1.0 S -105.6 68.7 NA NA NA
GLY L:93 NA:NA DO NA DO DO DO NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 GLY C:93 NA:NA DO NA DO DO DO NA NA NA
GLY F:93 F:144 60.0 0.8 G 80.6 -5.7 NA NA NA
GLY I:93 I:144 72.0 0.96 T -109.5 20.2 NA NA NA
GLY L:93 L:144 76.0 1.0 S 87.0 9.3 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 GLY C:93 NA:NA DO NA DO DO DO NA NA NA
GLY F:93 F:144 68.0 0.907 G 69.8 8.4 NA NA NA
GLY I:93 I:144 71.0 0.947 T -107.5 26.0 NA NA NA
GLY L:93 L:144 82.0 1.0 S 80.4 -3.2 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 70.0 0.933 T 74.0 -3.8 70.0 0.933 0.0 HOH
6.913
O
O
GLY F:93 F:144 69.0 0.92 G 78.5 -3.4 NA NA NA
GLY I:93 I:144 73.0 0.973 T 71.8 2.5 NA NA NA
GLY L:93 L:144 77.0 1.0 S 72.2 6.3 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 68.0 0.907 T 65.4 7.6 68.0 0.907 0.0 HOH
7.945
CA
O
GLY F:93 F:144 58.0 0.773 G 77.3 4.1 NA NA NA
GLY I:93 I:144 66.0 0.88 T 75.1 -1.2 NA NA NA
GLY L:93 L:144 74.0 0.987 S 70.7 1.0 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 82.0 1.0 S 57.0 53.8 82.0 1.0 0.0
GLY F:93 F:144 55.0 0.733 G 85.1 -7.3 NA NA NA
GLY I:93 I:144 71.0 0.947 T 73.2 3.9 NA NA NA
GLY L:93 L:144 85.0 1.0 S 61.9 30.1 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 74.0 0.987 77.5 -21.3 74.0 0.987 0.0 HOH
6.334
O
O
GLY F:93 F:144 54.0 0.72 G 74.5 -3.9 NA NA NA
GLY I:93 I:144 65.0 0.867 T -133.2 26.4 NA NA NA
GLY L:93 L:144 77.0 1.0 G 67.8 1.9 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 74.0 0.987 T 66.0 23.8 74.0 0.987 0.0
GLY F:93 F:144 59.0 0.787 G 86.2 -4.3 NA NA NA
GLY I:93 I:144 72.0 0.96 T 70.3 16.4 NA NA NA
GLY L:93 L:144 81.0 1.0 S 65.5 29.5 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 70.0 0.933 G 72.9 -9.7 70.0 0.933 0.0 HOH
5.136
O
O
GLY F:93 F:144 59.0 0.787 G 73.4 9.4 NA NA NA
GLY I:93 I:144 70.0 0.933 T 73.5 9.0 NA NA NA
GLY L:93 L:144 73.0 0.973 S 74.6 -16.5 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 64.0 0.853 T 57.9 20.7 64.0 0.853 0.0 HOH
9.937
C
O
GLY F:93 F:144 55.0 0.733 G 78.3 10.3 NA NA NA
GLY I:93 I:144 65.0 0.867 T 71.6 -0.4 NA NA NA
GLY L:93 L:144 71.0 0.947 S 63.0 14.6 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 66.0 0.88 G 72.7 -12.3 66.0 0.88 0.0 HOH
5.826
C
O
GLY F:93 F:144 69.0 0.92 T 58.5 20.6 NA NA NA
GLY I:93 I:144 69.0 0.92 T 68.4 5.2 NA NA NA
GLY L:93 L:144 75.0 1.0 S 72.8 -8.4 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 67.0 0.893 G 64.9 13.7 67.0 0.893 0.0 HOH
6.207
CA
O
GLY F:93 F:144 61.0 0.813 G 83.1 -29.7 NA NA NA
GLY I:93 I:144 71.0 0.947 T 74.0 0.4 NA NA NA
GLY L:93 L:144 79.0 1.0 S 72.9 -4.3 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 GLY C:93 C:144 72.0 0.96 G 67.2 11.6 72.0 0.96 0.0 HOH
6.374
CA
O
GLY F:93 F:144 61.0 0.813 G 62.8 12.2 NA NA NA
GLY I:93 I:144 66.0 0.88 T 72.5 7.7 NA NA NA
GLY L:93 L:144 75.0 1.0 S 64.5 6.0 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 GLY C:93 C:144 65.0 0.867 T 78.6 -10.9 65.0 0.867 0.0 HOH
5.640
C
O
GLY F:93 F:144 54.0 0.72 G 75.3 5.1 NA NA NA
GLY I:93 I:144 68.0 0.907 T 76.8 3.6 NA NA NA
GLY L:93 L:144 80.0 1.0 S 59.7 28.7 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 73.0 0.973 T 68.3 9.9 73.0 0.973 0.0 HOH
3.611
O
O
GLY F:93 F:144 60.0 0.8 G 77.5 5.8 NA NA NA
GLY I:93 I:144 69.0 0.92 T 69.1 5.5 NA NA NA
GLY L:93 L:144 79.0 1.0 S 57.8 22.7 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 67.0 0.893 T 61.1 24.5 67.0 0.893 0.0 HOH
5.760
C
O
GLY F:93 F:144 52.0 0.693 G 79.2 -1.1 NA NA NA
GLY I:93 I:144 67.0 0.893 T 70.3 11.7 NA NA NA
GLY L:93 L:144 74.0 0.987 S 57.8 26.3 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 67.0 0.893 T 68.4 2.5 67.0 0.893 0.0 HOH
5.300
N
O
GLY F:93 F:144 52.0 0.693 G 82.4 -1.2 NA NA NA
GLY I:93 I:144 69.0 0.92 T 72.1 3.7 NA NA NA
GLY L:93 L:144 79.0 1.0 S 59.0 25.7 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 73.0 0.973 T 61.6 21.1 73.0 0.973 0.0
GLY F:93 F:144 55.0 0.733 G 76.3 4.5 NA NA NA
GLY I:93 I:144 69.0 0.92 T 64.2 16.9 NA NA NA
GLY L:93 L:144 87.0 1.0 S 52.2 35.9 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 72.0 0.96 T 71.0 25.8 72.0 0.96 0.0 HOH
6.555
C
O
GLY F:93 F:144 58.0 0.773 T 77.6 9.6 NA NA NA
GLY I:93 I:144 73.0 0.973 S 61.4 28.0 NA NA NA
GLY L:93 L:144 81.0 1.0 S 62.1 32.7 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 67.0 0.893 T 76.9 -0.5 67.0 0.893 0.0 HOH
5.861
C
O
GLY F:93 F:144 54.0 0.72 G 82.6 -6.3 NA NA NA
GLY I:93 I:144 69.0 0.92 T 70.2 15.3 NA NA NA
GLY L:93 L:144 78.0 1.0 S 60.3 23.1 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 70.0 0.933 T 71.6 5.5 70.0 0.933 0.0 HOH
5.447
C
O
GLY F:93 F:144 62.0 0.827 G 82.3 -0.9 NA NA NA
GLY I:93 I:144 71.0 0.947 T 69.7 13.9 NA NA NA
GLY L:93 L:144 83.0 1.0 S 57.4 32.3 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 GLY C:93 C:144 74.0 0.987 G 58.6 17.6 74.0 0.987 0.0 HOH
3.730
O
O
GLY F:93 F:144 54.0 0.72 G 78.2 1.4 NA NA NA
GLY I:93 I:144 70.0 0.933 T 71.9 13.0 NA NA NA
GLY L:93 L:144 74.0 0.987 S 64.3 18.7 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 GLY D:93 D:144 63.0 0.84 T 54.5 25.3 45.0 0.6 0.24 A:O60885:0.24
HOH
5.699
C
O
GLY H:93 H:144 59.0 0.787 T 56.0 22.9 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 GLY A:93 V:144 70.0 0.933 T 65.0 -12.1 70.0 0.933 0.0 HOH
6.903
H
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 GLY C:93 C:144 71.0 0.947 T 66.5 28.1 71.0 0.947 0.0
GLY F:93 F:144 55.0 0.733 G 95.2 -12.6 NA NA NA
GLY I:93 I:144 69.0 0.92 T 68.1 20.6 NA NA NA
GLY L:93 L:144 81.0 1.0 S 56.2 36.8 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 GLY C:93 C:144 69.0 0.92 T 67.7 15.2 69.0 0.92 0.0 HOH
5.563
C
O
GLY F:93 F:144 59.0 0.787 G 77.0 -1.5 NA NA NA
GLY I:93 I:144 67.0 0.893 T 68.9 10.4 NA NA NA
GLY L:93 L:144 76.0 1.0 S 63.9 18.5 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 GLY C:93 NA:NA DO NA DO DO DO NA NA NA
GLY F:93 F:144 63.0 0.84 G 71.2 3.6 NA NA NA
GLY L:93 L:144 80.0 1.0 S 75.1 19.5 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 GLY I:93 I:144 70.0 0.933 T -115.0 28.7 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 GLY C:93 NA:NA DO NA DO DO DO NA NA NA
GLY F:93 F:144 67.0 0.893 T 92.0 3.3 NA NA NA
GLY I:93 I:144 67.0 0.893 T -110.8 17.9 NA NA NA
GLY L:93 L:144 76.0 1.0 T 63.0 17.0 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 GLY C:93 NA:NA DO NA DO DO DO NA NA NA
GLY F:93 F:144 66.0 0.88 G 65.0 14.1 NA NA NA
GLY I:93 I:144 78.0 1.0 T -113.0 43.1 NA NA NA
GLY L:93 L:144 79.0 1.0 S 67.4 4.7 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 GLY B:93 B:144 57.0 0.76 T 84.0 -45.9 57.0 0.76 0.0 EDO
HOH
9.744
2.759
O
N
O1
O
GLY F:93 F:144 57.0 0.76 T 84.7 -45.9 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 GLY B:93 B:144 54.0 0.72 T 75.7 -19.6 54.0 0.72 0.0 HOH
2.706
N
O
GLY F:93 F:144 54.0 0.72 T 75.4 -20.6 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 GLY D:93 D:144 49.0 0.653 T 59.7 33.6 49.0 0.653 0.0
GLY H:93 H:144 49.0 0.653 T 59.9 33.7 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 GLY D:93 L:144 74.0 0.987 T 65.8 32.9 74.0 0.987 0.0 HOH
2.779
O
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 GLY C:93 L:144 67.0 0.893 S 75.0 -0.4 59.0 0.787 0.106 D:P61964:0.107
HOH
4.784
O
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 GLY C:94 C:144 77.0 1.0 T 131.8 -45.1 77.0 1.0 0.0
GLY F:94 F:144 66.0 0.88 S -83.5 25.6 NA NA NA
GLY I:94 I:144 71.0 0.947 T -147.2 47.7 NA NA NA
GLY L:94 L:144 78.0 1.0 S 54.3 12.0 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 GLY C:94 C:144 66.0 0.88 S 159.4 -23.1 66.0 0.88 0.0
GLY F:94 F:144 71.0 0.947 S -48.7 62.2 NA NA NA
GLY I:94 I:144 71.0 0.947 S 136.1 -135.6 NA NA NA
GLY L:94 L:144 78.0 1.0 T 90.4 -49.0 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 GLY C:94 C:144 52.0 0.693 69.6 149.2 52.0 0.693 0.0
GLY F:94 F:144 72.0 0.96 T -142.7 58.6 NA NA NA
GLY I:94 I:144 74.0 0.987 T 56.1 21.6 NA NA NA
GLY L:94 L:144 69.0 0.92 S 121.5 7.7 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 GLY C:94 NA:NA DO NA DO DO DO NA NA NA
GLY F:94 F:144 67.0 0.893 S -105.1 72.7 NA NA NA
GLY I:94 I:144 79.0 1.0 S -90.8 46.9 NA NA NA
GLY L:94 NA:NA DO NA DO DO DO NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 GLY D:94 V:144 75.0 1.0 T 63.7 -3.0 75.0 1.0 0.0 HOH
7.407
N
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 GLY C:94 NA:NA DO NA DO DO DO NA NA NA
GLY F:94 F:144 64.0 0.853 G 78.8 5.2 NA NA NA
GLY I:94 I:144 79.0 1.0 S 54.6 43.4 NA NA NA
GLY L:94 L:144 74.0 0.987 T 67.6 17.8 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 GLY D:94 V:144 67.0 0.893 T 72.5 -6.3 67.0 0.893 0.0 HOH
4.302
O
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 GLY C:91 V:144 62.0 0.827 T 65.6 21.1 62.0 0.827 0.0 HOH
3.569
CA
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 GLY C:91 C:144 74.0 0.987 S 97.7 -4.1 74.0 0.987 0.0 HOH
3.147
O
O
GLY F:91 F:144 74.0 0.987 S 97.1 -3.1 NA NA NA
GLY I:91 I:144 75.0 1.0 S 97.2 -3.1 NA NA NA
GLY L:91 L:144 75.0 1.0 S 97.3 -2.9 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 GLY B:91 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 GLY C:91 C:144 56.0 0.747 G 58.9 12.2 56.0 0.747 0.0 HOH
4.340
N
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 GLY D:91 V:144 65.0 0.867 T 84.8 -2.1 65.0 0.867 0.0 HOH
2.019
H
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 GLY D:91 V:144 55.0 0.733 T 66.2 3.6 55.0 0.733 0.0 HOH
2.208
H
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 GLY I:91 V:144 53.0 0.707 T -54.3 -30.6 53.0 0.707 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 GLY C:106 C:144 59.0 0.787 G 67.9 -11.1 59.0 0.787 0.0 HOH
5.489
C
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 GLY A:94 A:144 66.0 0.88 G 63.7 3.3 66.0 0.88 0.0
GLY E:94 E:144 68.0 0.907 G 64.7 3.2 NA NA NA
GLY I:94 I:144 76.0 1.0 S -57.0 -4.5 NA NA NA
GLY M:94 M:144 60.0 0.8 G 64.6 2.8 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 GLY A:86 AAA:144 68.0 0.907 T 53.9 31.1 68.0 0.907 0.0 EDO
GOL
HOH
3.180
7.029
5.108
O
O
O
C2
C3
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 GLY A:86 AAA:144 68.0 0.907 T 71.0 20.3 68.0 0.907 0.0 HOH
9.877
O
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLY C:93 C:144 82.0 1.0 S 49.3 34.4 82.0 1.0 0.0 HOH
6.520
C
O
GLY F:93 F:144 70.0 0.933 G 68.5 12.7 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLY C:93 C:144 68.0 0.907 G 71.2 4.8 68.0 0.907 0.0 HOH
6.561
O
O
GLY F:93 F:144 55.0 0.733 G 79.5 -5.3 NA NA NA
GLY I:93 I:144 69.0 0.92 T 69.7 18.1 NA NA NA
GLY L:93 L:144 84.0 1.0 S 62.0 31.4 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 GLY C:93 C:144 73.0 0.973 G 62.0 25.7 73.0 0.973 0.0
GLY F:93 F:144 58.0 0.773 G 60.5 28.8 NA NA NA
GLY I:93 I:144 66.0 0.88 T 62.5 30.0 NA NA NA
GLY L:93 L:144 76.0 1.0 S 64.5 41.4 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 GLY B:84 B:144 65.0 0.867 T 66.8 13.0 65.0 0.867 0.0 HOH
2.709
O
O
GLY F:84 F:144 65.0 0.867 T 67.0 13.2 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 GLY L:85 V:144 8.0 0.107 116.6 36.1 8.0 0.107 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 GLY A:144 A:144 68.0 0.907 T 71.2 3.1