Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 10188302 . G A CCDS2597.1:NM_000551.3:c.445Gcc>Acc_NP_000542.1:p.149A>T Homo sapiens von Hippel-Lindau tumor suppressor (VHL), transcript variant 1, mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4wqo 1 P40337 100.0 4e-156 X-RAY
2015-03-04 ALA A:169 A:149 0.0 0.0 E -121.7 94.5 0.0 0.0 0.0
7q2j 3 P40337 94.25 1e-118 X-RAY
2021-11-24 ALA C:133 C:149 0.0 0.0 E -105.3 97.4 0.0 0.0 0.0 8KH
9.809
CB
S
4b9k 3 P40337 95.32 3e-118 X-RAY
2012-10-24 ALA C:107 C:149 0.0 0.0 E -109.6 99.5 0.0 0.0 0.0 HOH
5.486
N
O
ALA F:107 F:149 0.0 0.0 E -108.3 101.9 NA NA NA
ALA I:107 I:149 0.0 0.0 E -108.1 94.5 NA NA NA
ALA L:107 L:149 0.0 0.0 E -111.4 93.9 NA NA NA
1lqb 3 P40337 99.38 4e-117 X-RAY
2002-07-03 ALA C:98 C:149 0.0 0.0 E -120.1 96.4 0.0 0.0 0.0 HOH
6.558
C
O
3ztd 3 P40337 99.38 4e-117 X-RAY
2012-07-25 ALA C:98 C:149 0.0 0.0 E -109.7 97.8 0.0 0.0 0.0
ALA F:98 F:149 0.0 0.0 E -96.2 106.4 NA NA NA
ALA I:98 I:149 0.0 0.0 E -106.8 92.8 NA NA NA
ALA L:98 L:149 0.0 0.0 E -108.2 97.6 NA NA NA
4b95 3 P40337 99.38 4e-117 X-RAY
2012-10-24 ALA C:98 C:149 0.0 0.0 E -107.8 98.5 0.0 0.0 0.0 HOH
6.733
C
O
ALA F:98 F:149 0.0 0.0 E -108.0 98.4 NA NA NA
ALA I:98 I:149 0.0 0.0 E -119.0 98.5 NA NA NA
ALA L:98 L:149 0.0 0.0 E -109.0 97.9 NA NA NA
4bks 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ALA C:98 C:149 0.0 0.0 E -108.5 94.7 0.0 0.0 0.0 HOH
6.606
CA
O
ALA F:98 F:149 0.0 0.0 E -108.9 97.0 NA NA NA
ALA I:98 I:149 0.0 0.0 E -104.4 97.3 NA NA NA
ALA L:98 L:149 0.0 0.0 E -105.9 94.4 NA NA NA
4bkt 3 P40337 99.38 4e-117 X-RAY
2013-11-27 ALA C:98 C:149 0.0 0.0 E -106.7 92.5 0.0 0.0 0.0 HOH
6.472
CA
O
ALA F:98 F:149 0.0 0.0 E -104.0 89.2 NA NA NA
ALA I:98 I:149 0.0 0.0 E -103.2 90.1 NA NA NA
ALA L:98 L:149 0.0 0.0 E -104.1 93.7 NA NA NA
4w9c 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -102.2 96.9 0.0 0.0 0.0 HOH
6.446
CA
O
ALA F:98 F:149 0.0 0.0 E -100.8 98.9 NA NA NA
ALA I:98 I:149 0.0 0.0 E -102.7 94.4 NA NA NA
ALA L:98 L:149 0.0 0.0 E -108.5 95.2 NA NA NA
4w9d 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -105.8 96.5 0.0 0.0 0.0 HOH
6.426
C
O
ALA F:98 F:149 0.0 0.0 E -98.4 102.5 NA NA NA
ALA I:98 I:149 0.0 0.0 E -104.5 97.9 NA NA NA
ALA L:98 L:149 0.0 0.0 E -105.4 98.4 NA NA NA
4w9e 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -106.1 104.5 0.0 0.0 0.0 HOH
6.685
CA
O
ALA F:98 F:149 0.0 0.0 E -99.3 101.3 NA NA NA
ALA I:98 I:149 0.0 0.0 E -116.3 89.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -110.5 95.3 NA NA NA
4w9f 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -111.5 100.2 0.0 0.0 0.0 HOH
6.263
CA
O
ALA F:98 F:149 0.0 0.0 E -108.6 96.1 NA NA NA
ALA I:98 I:149 0.0 0.0 E -105.6 97.1 NA NA NA
ALA L:98 L:149 0.0 0.0 E -107.7 97.3 NA NA NA
4w9g 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -113.5 90.1 0.0 0.0 0.0 HOH
6.468
C
O
ALA F:98 F:149 0.0 0.0 E -92.8 101.5 NA NA NA
ALA I:98 I:149 0.0 0.0 E -116.7 92.9 NA NA NA
ALA L:98 L:149 0.0 0.0 E -107.8 91.5 NA NA NA
4w9h 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -112.5 94.0 0.0 0.0 0.0 HOH
5.812
N
O
ALA F:98 F:149 0.0 0.0 E -105.3 98.0 NA NA NA
ALA I:98 I:149 0.0 0.0 E -110.6 98.5 NA NA NA
ALA L:98 L:149 0.0 0.0 E -109.6 98.3 NA NA NA
4w9i 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -118.7 90.3 0.0 0.0 0.0 HOH
5.983
N
O
ALA F:98 F:149 0.0 0.0 E -102.5 100.1 NA NA NA
ALA I:98 I:149 0.0 0.0 E -117.5 83.5 NA NA NA
ALA L:98 L:149 0.0 0.0 E -114.4 94.6 NA NA NA
4w9j 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -106.8 95.9 0.0 0.0 0.0 HOH
6.460
CB
O
ALA F:98 F:149 0.0 0.0 E -103.6 98.7 NA NA NA
ALA I:98 I:149 0.0 0.0 E -110.7 97.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -110.8 98.1 NA NA NA
4w9k 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -109.6 93.5 0.0 0.0 0.0 HOH
6.531
CA
O
ALA F:98 F:149 0.0 0.0 E -101.0 100.1 NA NA NA
ALA I:98 I:149 0.0 0.0 E -105.6 97.1 NA NA NA
ALA L:98 L:149 0.0 0.0 E -104.6 101.3 NA NA NA
4w9l 3 P40337 99.38 4e-117 X-RAY
2014-09-10 ALA C:98 C:149 0.0 0.0 E -105.5 96.7 0.0 0.0 0.0 HOH
6.600
CB
O
ALA F:98 F:149 0.0 0.0 E -100.3 100.4 NA NA NA
ALA I:98 I:149 0.0 0.0 E -111.3 98.1 NA NA NA
ALA L:98 L:149 0.0 0.0 E -106.2 98.9 NA NA NA
5lli 3 P40337 99.38 4e-117 X-RAY
2016-11-09 ALA C:98 C:149 0.0 0.0 E -104.1 97.7 0.0 0.0 0.0 HOH
6.538
N
O
ALA F:98 F:149 0.0 0.0 E -98.8 101.8 NA NA NA
ALA I:98 I:149 0.0 0.0 E -107.8 92.8 NA NA NA
ALA L:98 L:149 0.0 0.0 E -108.1 97.6 NA NA NA
5nvv 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -107.4 92.4 0.0 0.0 0.0 HOH
5.902
N
O
ALA F:98 F:149 0.0 0.0 E -98.4 97.6 NA NA NA
ALA I:98 I:149 0.0 0.0 E -109.1 95.2 NA NA NA
ALA L:98 L:149 0.0 0.0 E -105.1 97.7 NA NA NA
5nvw 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -106.9 94.7 0.0 0.0 0.0 HOH
6.274
N
O
ALA F:98 F:149 0.0 0.0 E -103.2 100.8 NA NA NA
ALA I:98 I:149 0.0 0.0 E -110.2 92.8 NA NA NA
ALA L:98 L:149 0.0 0.0 E -111.7 99.8 NA NA NA
5nvx 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -113.3 94.6 0.0 0.0 0.0 HOH
6.106
N
O
ALA F:98 F:149 0.0 0.0 E -102.5 99.7 NA NA NA
ALA I:98 I:149 0.0 0.0 E -110.1 92.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -111.0 95.8 NA NA NA
5nvy 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -117.9 86.3 0.0 0.0 0.0 HOH
6.036
CA
O
ALA F:98 F:149 0.0 0.0 E -109.3 93.6 NA NA NA
ALA I:98 I:149 0.0 0.0 E -112.6 84.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -107.2 106.1 NA NA NA
5nvz 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -112.2 92.7 0.0 0.0 0.0 HOH
6.197
CA
O
ALA F:98 F:149 0.0 0.0 E -108.4 91.4 NA NA NA
ALA I:98 I:149 0.0 0.0 E -113.5 90.1 NA NA NA
ALA L:98 L:149 0.0 0.0 E -114.3 96.0 NA NA NA
5nw0 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -105.4 96.0 0.0 0.0 0.0 HOH
6.270
CA
O
ALA F:98 F:149 0.0 0.0 E -98.2 102.7 NA NA NA
ALA I:98 I:149 0.0 0.0 E -107.1 92.0 NA NA NA
ALA L:98 L:149 0.0 0.0 E -109.8 97.0 NA NA NA
5nw1 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -110.0 94.3 0.0 0.0 0.0 HOH
4.922
N
O
ALA F:98 F:149 0.0 0.0 E -107.9 98.1 NA NA NA
ALA I:98 I:149 0.0 0.0 E -112.3 96.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -109.0 96.5 NA NA NA
5nw2 3 P40337 99.38 4e-117 X-RAY
2017-09-20 ALA C:98 C:149 0.0 0.0 E -108.8 93.4 0.0 0.0 0.0 HOH
6.261
N
O
ALA F:98 F:149 0.0 0.0 E -105.9 98.5 NA NA NA
ALA I:98 I:149 0.0 0.0 E -110.3 95.6 NA NA NA
ALA L:98 L:149 0.0 0.0 E -107.7 98.7 NA NA NA
5t35 4 P40337 99.38 4e-117 X-RAY
2017-03-08 ALA D:98 D:149 0.0 0.0 E -124.5 104.0 0.0 0.0 0.0 HOH
5.159
N
O
ALA H:98 H:149 0.0 0.0 E -125.2 103.9 NA NA NA
6bvb 1 P40337 99.38 4e-117 X-RAY
2018-08-01 ALA A:98 V:149 0.0 0.0 E -108.7 101.2 0.0 0.0 0.0 HOH
6.685
C
O
6gfy 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ALA C:98 C:149 0.0 0.0 E -126.8 93.6 0.0 0.0 0.0 HOH
6.606
C
O
ALA F:98 F:149 0.0 0.0 E -110.5 99.3 NA NA NA
ALA I:98 I:149 0.0 0.0 E -122.0 89.8 NA NA NA
ALA L:98 L:149 0.0 0.0 E -125.7 100.2 NA NA NA
6gfz 3 P40337 99.38 4e-117 X-RAY
2018-07-11 ALA C:98 C:149 0.0 0.0 E -106.6 91.8 0.0 0.0 0.0 HOH
6.327
N
O
ALA F:98 F:149 0.0 0.0 E -103.8 95.3 NA NA NA
ALA I:98 I:149 0.0 0.0 E -112.0 97.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -107.7 97.4 NA NA NA
6gmn 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ALA C:98 C:149 0.0 0.0 E -108.9 96.5 0.0 0.0 0.0 HOH
6.501
C
O
ALA F:98 F:149 0.0 0.0 E -105.3 95.7 NA NA NA
ALA L:98 L:149 0.0 0.0 E -106.6 97.6 NA NA NA
6gmn 5 P40337 99.38 4e-117 X-RAY
2018-08-08 ALA I:98 I:149 0.0 0.0 E -107.6 96.2 NA NA NA
6gmq 3 P40337 99.38 4e-117 X-RAY
2018-08-22 ALA C:98 C:149 0.0 0.0 E -109.7 98.9 0.0 0.0 0.0
ALA F:98 F:149 0.0 0.0 E -106.6 98.9 NA NA NA
ALA I:98 I:149 0.0 0.0 E -107.2 101.0 NA NA NA
ALA L:98 L:149 0.0 0.0 E -105.9 100.6 NA NA NA
6gmx 3 P40337 99.38 4e-117 X-RAY
2018-08-08 ALA C:98 C:149 0.0 0.0 E -111.2 95.2 0.0 0.0 0.0 HOH
6.658
C
O
ALA F:98 F:149 0.0 0.0 E -111.4 92.0 NA NA NA
ALA I:98 I:149 0.0 0.0 E -112.7 96.5 NA NA NA
ALA L:98 L:149 0.0 0.0 E -110.6 97.4 NA NA NA
6hax 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ALA B:98 B:149 0.0 0.0 E -122.2 94.8 0.0 0.0 0.0 HOH
5.084
N
O
ALA F:98 F:149 0.0 0.0 E -122.7 95.1 NA NA NA
6hay 2 P40337 99.38 4e-117 X-RAY
2019-06-12 ALA B:98 B:149 0.0 0.0 E -119.3 97.2 0.0 0.0 0.0 HOH
4.936
N
O
ALA F:98 F:149 0.0 0.0 E -118.6 97.1 NA NA NA
6sis 4 P40337 99.38 4e-117 X-RAY
2019-12-04 ALA D:98 D:149 0.0 0.0 E -131.0 93.3 0.0 0.0 0.0
ALA H:98 H:149 0.0 0.0 E -131.1 93.3 NA NA NA
7jto 4 P40337 99.38 4e-117 X-RAY
2021-10-06 ALA D:98 L:149 0.0 0.0 E -113.8 96.3 0.0 0.0 0.0 HOH
5.669
N
O
7jtp 3 P40337 99.38 4e-117 X-RAY
2021-10-06 ALA C:98 L:149 0.0 0.0 E -108.4 97.2 0.0 0.0 0.0 HOH
5.181
N
O
3zrc 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ALA C:99 C:149 0.0 0.0 E -107.4 97.1 0.0 0.0 0.0
ALA F:99 F:149 0.0 0.0 E -121.7 94.5 NA NA NA
ALA I:99 I:149 0.0 0.0 E -102.6 98.2 NA NA NA
ALA L:99 L:149 0.0 0.0 E -106.0 92.4 NA NA NA
3zrf 3 P40337 98.77 4e-117 X-RAY
2012-03-07 ALA C:99 C:149 0.0 0.0 E -120.9 79.4 0.0 0.0 0.0 HOH
7.599
CA
O
ALA F:99 F:149 0.0 0.0 E -110.8 85.4 NA NA NA
ALA I:99 I:149 0.0 0.0 E -105.3 102.4 NA NA NA
ALA L:99 L:149 0.0 0.0 E -125.1 85.9 NA NA NA
3ztc 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ALA C:99 C:149 0.0 0.0 E -114.0 100.2 0.0 0.0 0.0
ALA F:99 F:149 0.0 0.0 E -109.4 89.7 NA NA NA
ALA I:99 I:149 0.0 0.0 E -114.4 93.5 NA NA NA
ALA L:99 L:149 0.0 0.0 E -115.6 96.5 NA NA NA
3zun 3 P40337 98.77 4e-117 X-RAY
2012-07-25 ALA C:99 C:149 0.0 0.0 E -112.0 97.7 0.0 0.0 0.0 HOH
7.247
N
O
ALA F:99 F:149 0.0 0.0 E -101.1 96.7 NA NA NA
ALA I:99 I:149 0.0 0.0 E -117.5 90.3 NA NA NA
ALA L:99 L:149 0.0 0.0 E -117.3 96.5 NA NA NA
4ajy 4 P40337 98.77 4e-117 X-RAY
2012-11-14 ALA D:99 V:149 0.0 0.0 E -112.3 96.9 0.0 0.0 0.0 HOH
6.385
N
O
4awj 3 P40337 98.77 4e-117 X-RAY
2012-11-14 ALA C:99 C:149 0.0 0.0 E -114.3 91.1 0.0 0.0 0.0 HOH
6.587
C
O
ALA F:99 F:149 0.0 0.0 E -106.3 86.7 NA NA NA
ALA I:99 I:149 0.0 0.0 E -108.1 88.8 NA NA NA
ALA L:99 L:149 0.0 0.0 E -105.4 94.2 NA NA NA
6gmr 4 P40337 98.77 4e-117 X-RAY
2018-08-08 ALA D:99 V:149 0.0 0.0 E -112.8 99.5 0.0 0.0 0.0 HOH
6.502
CA
O
1lm8 3 P40337 100.0 6e-117 X-RAY
2002-06-12 ALA C:96 V:149 0.0 0.0 E -122.0 93.5 0.0 0.0 0.0 HOH
6.547
CA
O
1vcb 3 P40337 100.0 6e-117 X-RAY
1999-04-21 ALA C:96 C:149 0.0 0.0 E -115.1 95.4 0.0 0.0 0.0 HOH
7.171
CA
O
ALA F:96 F:149 0.0 0.0 E -114.9 96.2 NA NA NA
ALA I:96 I:149 0.0 0.0 E -115.8 95.0 NA NA NA
ALA L:96 L:149 0.0 0.0 E -115.4 93.9 NA NA NA
5n4w 2 P40337 100.0 6e-117 X-RAY
2017-06-07 ALA B:96 NA:NA DO NA DO DO DO NA NA NA
6gfx 3 P40337 100.0 6e-117 X-RAY
2018-07-11 ALA C:96 C:149 0.0 0.0 E -112.2 95.9 0.0 0.0 0.0 HOH
4.802
N
O
6i7q 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ALA D:96 V:149 0.0 0.0 E -113.0 98.0 0.0 0.0 0.0 HOH
5.521
HA
O
6i7r 4 P40337 100.0 6e-117 X-RAY
2019-11-27 ALA D:96 V:149 0.0 0.0 E -115.1 97.8 0.0 0.0 0.0 HOH
4.830
HA
O
6r7f 9 P40337 100.0 6e-117 EM
2019-08-28 ALA I:96 V:149 0.0 0.0 E -116.6 111.8 0.0 0.0 0.0
7khh 3 P40337 100.0 6e-116 X-RAY
2021-02-24 ALA C:111 C:149 0.0 0.0 E -115.6 94.1 0.0 0.0 0.0 HOH
5.728
N
O
7cjb 1 P40337 100.0 8e-116 X-RAY
2021-07-14 ALA A:99 A:149 0.0 0.0 E -107.0 100.0 0.0 0.0 0.0
ALA E:99 E:149 0.0 0.0 E -106.8 100.4 NA NA NA
ALA I:99 I:149 0.0 0.0 E -108.2 100.5 NA NA NA
ALA M:99 M:149 0.0 0.0 E -107.6 99.6 NA NA NA
6zhc 1 P40337 100.0 4e-113 X-RAY
2020-08-05 ALA A:91 AAA:149 0.0 0.0 E -103.3 93.4 0.0 0.0 0.0 GOL
GOL
HOH
6.622
9.375
4.941
N
N
N
O3
O1
O
7pi4 1 P40337 100.0 4e-113 X-RAY
2021-09-29 ALA A:91 AAA:149 0.0 0.0 E -112.5 86.8 0.0 0.0 0.0 HOH
6.753
CA
O
6fmi 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ALA C:98 C:149 0.0 0.0 E -102.9 91.4 0.0 0.0 0.0 HOH
5.916
N
O
ALA F:98 F:149 0.0 0.0 E -108.9 100.2 NA NA NA
6fmj 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ALA C:98 C:149 0.0 0.0 E -108.7 90.2 0.0 0.0 0.0 HOH
6.423
CA
O
ALA F:98 F:149 0.0 0.0 E -97.0 99.0 NA NA NA
ALA I:98 I:149 0.0 0.0 E -100.7 86.6 NA NA NA
ALA L:98 L:149 0.0 0.0 E -113.0 93.6 NA NA NA
6fmk 3 P40337 99.34 1e-109 X-RAY
2018-04-11 ALA C:98 C:149 0.0 0.0 E -115.1 91.3 0.0 0.0 0.0 HOH
6.078
N
O
ALA F:98 F:149 0.0 0.0 E -108.3 94.6 NA NA NA
ALA I:98 I:149 0.0 0.0 E -112.6 88.6 NA NA NA
ALA L:98 L:149 0.0 0.0 E -108.2 97.2 NA NA NA
6hr2 2 P40337 100.0 3e-108 X-RAY
2019-06-12 ALA B:89 B:149 0.0 0.0 E -119.1 97.3 0.0 0.0 0.0 FWZ
HOH
9.029
4.738
HB3
HA
H25
O
ALA F:89 F:149 0.0 0.0 E -119.4 97.2 NA NA NA
6r6h 12 P40337 100.0 3e-107 EM
2019-08-28 ALA L:90 V:149 0.0 0.0 -82.6 65.3 0.0 0.0 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p40337-f1 1 P40337 100.0 2e-156 ALA A:149 A:149 0.0 0.0 E -103.4 92.5